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LotjaGi6g1v0290000.2

Overview

Field Value
Gene ID LotjaGi6g1v0290000
Transcript ID LotjaGi6g1v0290000.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description 50S ribosomal protein L4; TAIR: AT2G20060.1 Ribosomal protein L4/L1 family; Swiss-Prot: sp|Q2RQW1|RL4_RHORT 50S ribosomal protein L4; TrEMBL-Plants: tr|I3S8B8|I3S8B8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0290000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:60719695..60724725) extracted from Lotus japonicus Gifu genome v1.2.

AAAAAAAACTGAGAAGAGGCTGGGTCCTATGACGCCTATTCTTGCTGAAACGTGAATTTGGGAAACCTCCCACGCCTATT CTTCGCCTGAGAAGAGAAGTGGTATGCAACCGCTCAGCCGCCGCCGCCGCACGTGAAGCTCCGGCGACCAACCTACATCA TCGAACCTTGTGTGTTAGCTTTGGTAACTCGGTCTCTATCTCATTGCTTCATTTCCATATCGAATTTCTGATTTACGCTG AAACTGAAGTTGCTTTTGTGAATGAAATTGAGCACTTCATCTAATTTCAGTTCTCTTTTATAGATTGGTTGTTTCTTCAA TTATGGCTGCTTTGATCTCCAAAAGACTGCTACGTTCTTCTGAATCCTTGCATTCACTAGGACGCCGCTGTTTTCATCAA TCGCGTGGTAAGACATTTATGCAGCTTCATATCCATGTAATGTAACGATGCTTTCTCCCTTTGATTTGATATTTATTTAT TTTGCTGGCAGATATATGCAGCAGTTTATCTGGGGAGAGACGGTTTTCTGCACAACGTCCTGGCCTTCTCTTGGTACATT GCCATTGCATTTGATTTTTGTAACTTATTTTCAGGATTAGTGTTTAATCAATGGAGCTCTCACTTGTGCTGGTTGTTTTC TGATGTGGTGTAGTTTATTTAATTGTAGGCCAGGTCAATGATCCAACGGTTTTGTACTTCTGTTTCGGTTCCGGGGTACC ACGAAGGTGCATTTCCGTCTGATTTATTGTCCAATAAGCCTCTCGCAACATCTGAGCGTGATATAGGTATGAATTATATA CTGGTGTTTCATAGTTTGATGCATTTTGATATTTCTAAAAGGAGAGCTGAGCTTATTTGCCTGCTAGGGGTGAATTTTTA TCTGGCCTAGATGATTGAGATATGAGATATGTTTCAATGTCCATTTTGTGTCGTTAATGTATTTCATTATGATTTAGGGC TTTGTCAGGATCTTTTAATTCCAGTAACAAACTTTCATAATGAAGACAAGGGCTTAATGGTTTTAGCTGGAGATGTTTTT GATGTGCCCATTCGCAAGGATATTATTCATCGTGTTGTTAGGTGGCAGCTTGCAAAACGACAACAGGTTGTGATTGCATA GTCTTTTCCTCTCTTAATGGTTTATTGGATATATAATTTGTCTAGTAGTATAGATCCACATTGTTGGTGATGAAAATTTC CCATGAGATTATTATGTGTTTCCTAATAGATATGGCCAACAGGGAACTCACTCAACCAAAACCGTAAGTGAGGTCAGGGG GACTGGAAGAAAGATGTATAAACAAAAGGGATTGGGAAAAGCAAGGCACGGATCACAGCGTGTGCATCTGGTAGTGTAAC GTTCTGCTCATAATTGCCAGTCTATCTTTATTCATCCGCTACTGACAGTTTTCTGTTCTTTCCACCCTTATCGACACTGG AAATTAATAAATATAATTAATGATAACAGTTCAGGGGTGGTGCTGCCATGCATGGCCCGAAGCCCCGTAGCCATGCTTTC AAACTCAATAAGAAGGTTCGCCGTCTGGGGCTGAAGATTGCTTTGTCAGCTCGTGCAGCAGAAGGAAAGGCAAGTCTCCG CCATCTCTGCCCTTGCCTTCTCCCTATAAACAATAACAACACATCTTTTCTACTTTATTCTGTCTGCTGCTTTTTTTTGC GTTCTTGCGTATACTCAATACGGTGATTATTTACCAGAAAAATAAATAATAATTTGGTGTGACTTTTCACTTCTTAAAGA TTTCATCTTTAGATTTTATAAATTTATTGGTTGAATTCTTATTTCTTTTAAGGGCTTCTTTGTTGTTGATATTTTTATTG ATATCAAAATTTAAGACAGTTCAGGGAAGCCTACTGCATAGTCATTTTGCATTTAATATGTCATATGTATTTTCTCAGCC TCACTCAATCGTACTGTTTCTTTAATCCTTTTCTTGAGCTATAAAAATAACCAGTGCAAGCTGTTCTTTTAAACTGCAAG CAACTTCTGAATACAATTGTGTTTGAGTAAAGGTTAACCGTACTTTACGCAGCCCAGATCAAAATACATGCCCCTCTCTT AACTGAGCTATAAAGTTTTGTCATTAAAAGTGGGCGTGAAGGTCACATGACTGCTTACTGCAGCAAAACTACCTATAGAA ACTTCATAAGAAACAGGAAGATAACTCATGAAACACAAAGAAAAGGGCAATGCTTCTACATCAGCTGTCCTTGGACTGCT TCTGTCTTGTGACTTAGATTGTTCTTTGGGGCATGTATCTCTATCCTGATATTATAATATATTGTTTTCATTACCAAAAT GTCTCATTGTCATTCTAATAGGGTTTATTACATTGTTCATTCTTGCATTTGTTTTGTACATGAGGTGTTATTTGGATTTC TTTCTGATAGTAATAGCGATAGACCTGTTATAACAATGGTTTATCAGAGGAGGGGAAAGGAGAAGGTCGTCTGGTCATGC CATGTGGGCAGTTAGGATTTTCTATCTGATTTTTGGGGAAGAACAGTTGTTAGTGTCTGTTATAAATAGCTGGGCTTGTC TGTTAGTTAGTTAGACAGTTCTGGAGTAGGAAATTGTGGAGAGGGTTGGGACTCTCGAATTCCCCAACAACTTGTATCTG TTTACCTAATTTCCCAATTGGGATTAGGGTTCTATAGCAATAACAATCAATTCAATATCTGCAGTTAGTTCTATCACTTT CATGCCATAATTTTTTTTTTTTTGTATTTATACAGCTTCTTGTCTTTGAGGATCTGGATGTTCTCACACATAAAACCAAG AACATTGTGAATTATTTCAAACAAATGGAGGACTCCAAGAAACTTCTGCTCGTAGATGGTGGCCCCATAAATGAAAAGCT AAAATTAGCTACACAAAATCTACATTATGTTAACGTCCTTCCCTCCATTGTAAGTTTCTGTTTTATCCATGTTACTTCTA ACATAGTTTGAATGGAAGTGATAATATCATTGTCATTGTGTTGTGTCGTGAGGGCCCCCCTCCCTGTCGTGGCATTGGAG GCGGCATAAATATATTTTTATACACCACATTAGACACTGCAACTTTCACCCAAAACCTTTTGGCAATACGTGTACGGGTA CTTTCACTTATATACTGTTCAACACTTTCTTTTTCATCAAACGTGTGAGATCTTTTTTATTTTTTACTCACACTTGAGTT CTCAACAATGTGAGTCATCACCATATTACCATCCTCACCCTTTGCACTTTGCAGAAGGTTGTTAGTCAATCAGGATTGTA ACCATTGGCTCAATCAAAAGACCAACTTTTTAGTAAAACCACTTATAACAAGGTCTTTTTCAATGTTTTCTCCTGGTTGT TATCTAAACCCAACTATCTTCAATTTTATCGACTTTTGTCACTAGAGCCTCTATTGGTGGTCTTCTCATACAACCAAATT ATTGTACGAGATTTTCCATCATCTTCTCCTTCATAGGGGCTACTCCTCCTTTCTTTCAGATAGTTGTCATTTTTAGTATT ATATATTCACTCATCCACTACAGCATTGTCATCTTACATATGCTCATTTGTTCGCTTCTATTGGCACTTCAATGCCTATC ATCCACTATGATAAATCATTATTGATCTAATAATTATCCAATATAATTTTATTTGTTGTTTGATAGTGTCAACTTGTGAC TAGAAATGAGTGTAGCATGTCGATTTGTATGTGTGAGACATCTCCATGGGCACTTTGCAAGATGGACATAAAGTAGTTAA ATTGCACAGCTTATGATATGATGCAATATTCACAAAGTTTAACCTCCAAAACATCGCTAACTCTGTATCTTGGACTTTAC CCCATGCCCTATTTCTGACTTCCATTTAGTTGAAAACCCATTGATTCCAAAGCTTCTTTGCAAATTTTACTCATTCCTTT GACTTATCAAGGACCATATCATCCACATAAGTATACATTGGCAGAGGCTTGTGGATGTGCATAATAATTAATAAGCACAA CAATACTAAGGTGCAAACATAAAGTTGATGCTTGGTGCAAACACGTGGTTATAGGAAATATTCTTTTGCACATCCATTGA GTTTCCACACCAGTCCTTGTACCATCATGTATCCTTTATTCCTTGATTAAGTAATACAATTATACAAACATTTTTCTATA TCATTGATGACATGTGCTGGTCTTTTTTTGCTTTTTGTATGCCTGCAATAGGGTTACAGCCTCCATTGTTAACTTCTTTG GCATCCAAGTTAGTTCAGTGACATGGTGTAACCTGCAAGCCTTATGATGCTAATTGTTAAAAGTACCCAGTTTCTCCTAA AACCAGCACGCTTTTAAAGTATCGTTCAATCATTACTTAGGAAGTTTCATGATCACAAACCATATAATATAGAGATTTTC TTTCATGTATGATGCGTTTGACATGTTTTTGCAGGGCTTGAATGTCTACAGTATTTTGCTGCACGACACTTTGGTGATGT CTCGAGATGCGGTGAACAAAATTGTTGAGCGTATGCATACTCCAATAAGTCGTTGAGGCAGTAACTATTTTTGTGCTCCA CTTTATTTATTCAGAATCAGGAATAGTGTCCCATCTCCCCATTTCTGTAACATAAGTAATCCAATGATAATGTTTTTTGT ATGACTGTTCTGTTAAAATTACTCAAGCTAGGAAAGTTCATACCATTTCTATGGCGTTCAAGACTGCAACTTAGGAATTT GATGGTTGAATTTTAATGCTCAAGCGGTTAGGTTTGTCAGTGTCCAATGGTCAGATATAATTTTTACCGTTCTTTCAAAT GCATAAGGATCTGAGAAACGTGTACTTCATTCTCGCCTCTGTCAATGAGTTTATCCTATATATAATCTCTGACTTCAAAT GATTGAATTTGATTTGTTGGCATCAAATTAGGGATGGCCATTCAAAAGTTTTAGTTCTGCTCTACCCCTGCCTCCCTTTC TCACTTAGTAGTACTTCTTAGGGATACAGTTTGTTGGATAAGAATATAGCTTAGAAGTCTCTTGGTGCCCC
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0290000.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGCTTTGATCTCCAAAAGACTGCTACGTTCTTCTGAATCCTTGCATTCACTAGGACGCCGCTGTTTTCATCAATC GCGTGATATATGCAGCAGTTTATCTGGGGAGAGACGGTTTTCTGCACAACGTCCTGGCCTTCTCTTGGCCAGGTCAATGA TCCAACGGTTTTGTACTTCTGTTTCGGTTCCGGGGTACCACGAAGGTGCATTTCCGTCTGATTTATTGTCCAATAAGCCT CTCGCAACATCTGAGCGTGATATAGGGCTTTGTCAGGATCTTTTAATTCCAGTAACAAACTTTCATAATGAAGACAAGGG CTTAATGGTTTTAGCTGGAGATGTTTTTGATGTGCCCATTCGCAAGGATATTATTCATCGTGTTGTTAGGTGGCAGCTTG CAAAACGACAACAGGGAACTCACTCAACCAAAACCGTAAGTGAGGTCAGGGGGACTGGAAGAAAGATGTATAAACAAAAG GGATTGGGAAAAGCAAGGCACGGATCACAGCGTGTGCATCTGTTCAGGGGTGGTGCTGCCATGCATGGCCCGAAGCCCCG TAGCCATGCTTTCAAACTCAATAAGAAGGTTCGCCGTCTGGGGCTGAAGATTGCTTTGTCAGCTCGTGCAGCAGAAGGAA AGCTTCTTGTCTTTGAGGATCTGGATGTTCTCACACATAAAACCAAGAACATTGTGAATTATTTCAAACAAATGGAGGAC TCCAAGAAACTTCTGCTCGTAGATGGTGGCCCCATAAATGAAAAGCTAAAATTAGCTACACAAAATCTACATTATGTTAA CGTCCTTCCCTCCATTGGCTTGAATGTCTACAGTATTTTGCTGCACGACACTTTGGTGATGTCTCGAGATGCGGTGAACA AAATTGTTGAGCGTATGCATACTCCAATAAGTCGTTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0290000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAALISKRLLRSSESLHSLGRRCFHQSRDICSSLSGERRFSAQRPGLLLARSMIQRFCTSVSVPGYHEGAFPSDLLSNKP LATSERDIGLCQDLLIPVTNFHNEDKGLMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTVSEVRGTGRKMYKQK GLGKARHGSQRVHLFRGGAAMHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKLLVFEDLDVLTHKTKNIVNYFKQMED SKKLLLVDGGPINEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVNKIVERMHTPISR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10746:SF14
67 305 239 1.8E-131 –
PANTHER
PTHR10746
67 305 239 1.8E-131
IPR013005
Gene3D
G3DSA:3.40.1370.10
83 305 223 3.8E-75
IPR023574
SUPERFAMILY
SSF52166
95 298 204 1.09E-68
IPR023574
Hamap
MF_01328_B
101 300 200 29.889
IPR013005
Pfam
PF00573
111 297 187 6.1E-63
IPR002136
TIGRFAM
TIGR03953
111 296 186 1.0E-65
IPR013005

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003735
Molecular function Structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
Subterm of
GO:0005840
Cellular component Ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
Subterm of
GO:0006412
Biological process Translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
Subterm of
Part of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0290000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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