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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0290600 |
| Transcript ID | LotjaGi6g1v0290600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; TAIR: AT1G62305.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; Swiss-Prot: sp|Q8IUQ0|CLVS1_HUMAN Clavesin-1; TrEMBL-Plants: tr|A0A072V4K7|A0A072V4K7_MEDTR Core-2/I-branching enzyme; Found in the gene: LotjaGi6g1v0290600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:60785520..60791916) extracted from Lotus japonicus Gifu genome v1.2.
ATTGCATCCATTGGTTGCACTCCAAAACAATGTCTAGATTTCGAGGTCGGTGCCGGTGGGACCCACGATCAGAATCTTAA CGACGACGTTTTGACGTGGTAGTCCAATTCCAATTCTGGTTCGTTTTCTTGAGAACAGGTGCAACTGTGCAAGCAACGTA ACGCTGTACAGCTCAGATGCCATGAACATGGAAGGAAGACAAAGGAGAAGTTACAGGAACAACGAAACCACATAGCTGTT TCCCTCTATCCTCCCATCCCAATTCAACACCATCTCATTGATCCTACACACATACATAGCAATTATCGGAGCAATGGCGG CGAGAGGAATCAAGCGCCGCCACGTTACCACTACCTTCAGCTGGAAGCTGCTGATTCTCCTCTCCGCTTCCATCTCCTCC GTCGTCGTTTTACTTCTCTTCTTCACCTTTCACTCTGCTAACAATGTCACTCACAAACCCCCAATTCGAATTCCTCGCGT CTTCGATGGCCCACCCAAGATCGCATTCTTGTTCCTCGTTCGCCGCAACATCCCCCTTGATTTTCTCTGGGGTGCTTTCT TCCAGGTTCGTCGTCCTCTTTCTCCTTTGGGAATGATTCACCAATAATTGGAAATTTTGGGAATGTTTCAATTTTTTTTT TCTTTGCAGAATGGGGAAGTGGCGAAGTTTTCGATTTTTGTTCATTCCATGCCTGGGTTTGTGTTGGATGAGTCAACCAC CAGGTCGCACTTCTTCTACGGTCGACAACTCAGTAATAGTATTCAGGTGAGTTTGCAATTTCTCTATGCAATTAATTTCA TTTCTGATTGTGAATGCACTTACCCTTTTTCGTAAAGGAGAAGATGGAAACAAAAAAAAAACCTAACTTGGACCTACTTT ATATGATTATATCTATGGTATATTGAACATTGAATGTGCTCCATTGATAAGAAGCAAAGAATTTCATGTTTTAGAGTGGG ATTTACCTCTTCTAAAGTGAAGAAATCATTTTTAGAAGGAAAATGAGTAGTTATACACTTATACTTATATAACCATTGAT TAGTAATTCAATTACTAAAACTTGAACACCTTTTGTTATACATGTCTTTGCGCACGATCATCATCCCATTTGTCAAATTT TCAATCAATAAGTATAACTAATTTTCAATCAATGTAGTAATGTCATGTATTGTGTTTGGTATTGGAATGTGTTGTTTTGT CCCTTGTTTATAATTATAAGAATTTAGTGGTGCATATCTTAGGTATCATGGGGAGAATCAACTATGATTCAGGCTGAAAG ATTGTTACTGGAAGCAGCTTTGGAAGACCCTGCAAATCAAAGATTTGTTCTTCTCTCCGACAGGTTGGTGTTTTCAAGTT GTAGGTTTCCTGTAGGAGCTGTTTTTTTTCTATGTTTCTTTTTCTTGGTTGTTGCTGACTACTAAGGATGAGTGGATACT TTAAAAATCATAAGATTATGAATACAGTTATTAGAGAGAAAACTCGGGTATAATTTCGTCTTAGGGGGTTTGATGTGTAA TAAGAAGACCCATAGAAGGCCTGGTTGGGAGGATGGACCAGATGGATGATAGTTCAATAGCTAGAGATAGATGAAGACTA AGAAATGTTATAGGGCCAACCACTAAGAGATTTAGAGGTAAACGTAGAGCTTTTTGGCACTGCATGATCCTTGTAACTAA CCCCACCTAATGGGAAAAAAGGCTTGGTTTTTTGTTGTTCTTGTTCATCAATCAGGGCAGGGGCGGGTTGGGACTTGAGA TATATTTTTGCAAGTACTTAGTTGGCCATGGTAACGATCTGAGTTTCTGTTTTCTGTGTGCAGCTGTGTTCCTCTGTACA ACTTTTCCTATGTGTACAATTATGTAATGGTTTCTCCAAAGAGTTTTGTGGACAGGTAGAAGAAGGCTTTGGTTCTTGAG GTGCTTCGCACTCATTCTTTTTTTACTGTTCATGTATATATCCATACATTTTTTTTTGTGTAATTGAGATATTTCAAAGG TGTAGCTAACTAATTTGCTTACATTGCAGCTTTCTTGATGTGAAAGAGGGCCGCTACAACCCAAAAATGTCACCCAAGAT ACCAAGGGAAAAATGGCGTAAAGGTTCCCAGGTTATTTCTCTTAACTTTTATTTCAGTGTGTGAGCCTCAATGTTCTTTT TTCCAATCATACAGGTTTCTGTCTATTGGGTTTAGTACTTTAGTAGAACATCTCCTTCTCCAATCTGTCAGAACCTACTG TTTAGATGTTTATTTTTCTTGTAAACTCATAAATTTAGCTGATACTTGCTGATGAAGAAGTAGCAATTTGGCTTGGTGAA GTTGATAAAATATAAGGGGGTGTTTGCCAAACTCTAAAAACGGGATGACTTGCAACATTGGTGCAGGTTTTAAAATGAAG TGTTTGGAGAGTATTAAAAATTTGGGGGAAAAACTTATTTGAGTCCATTTTTGAATTAAAAGTTTCTCTATATGTTGCCT GTTTCTCTAAATATATCTGTATAACTTAATTTGTTTATGAAATGATGACAGATTTTAACCAAATGGAATAAATTAAGATT AGTTACAAATAGCATGAATCTATATGTTTCTAAACCATTTTTATTGGTTGCCAAACTTCCCTTGATGTTCCTTTACTCTG CATGTAGATGGTAGGTAGTTTTAAGTCGTGTTCTGTATATGATAATATACTCATTCATTTGAGTTGATTAATAATGGCTT AAAATTATATAGGCAAGGATATGCCGTCCTTTTTCAAACTTGTTGATATAAAGCTTGGTTTGTTGTTGTTTGATTGCTTT TATCGATACCAAACAGATGTTAATTGTTAGTTTGTTACATTGGGATTATAGGATGAAATTTTCAACATTTTATTCATAGA AATTGTCTTAATTTGAATTTCTCTTGCATTTTCTTTCCAGTGGATCACCTTAATTCGTAACCATGCAGAAGTGATTGTAG ATGATGATGTTACTTTTCCTGTCTTCAAGAAGTTCTGTAAGGTGTGTAATCGATCATGAGTTAGCCTAACTACAAATCTA AGTCGATTCCAATATTTTTTATTGCTTTCATGCTTTATTAAAGTTGGTTGGTGTTACATCAAAATTATCATGTAGAATTA CTTTCCAGCATATTACAATCTATACAATACTAGACTGACTGTAAGTCTGCAATGTGTTAGAAAAGTCTTTCTAATTTTCT TCTCACTTGGCAGAGACGTCCAGCAATTGATACCAGAAAGGGAAAGCTGAATCTTGTAAGTGATATAATTTTAATTTTCT AGCTCTAAGTTGTTACTGGATGCTTTCATGCTACTGTCAGATTTTATGCATAATAGGGAAGCATATTCTTTGCTTTTAAT CAGAAATTATTAATTCAAGTTCTTTGAAGATAGGGGGGATTATGCTGGTAGTTCCAAATAATTGTAACTGGCTAATGGAA CCTCTATGCACCATGTTTCTTTTTGTCCCTGTTAGCTTCAACAATATACTTTCCCTATTAAGTATGCTGAAACCCTGTTG TTATTTATACTGATAATATTGTGATGCTACTCCATACTCATTTATGTATAGATTTTTATTTTCATACTGATAATTAGTTG CTATGGTTTTCGTGTTACTGCAGAAACTTCAGAAGCAGCACAACTGTATTCCAGATGAACACTATGTGCAGACATTGCTT GCGGTAAGATACTGAGATGTCGTTTCCATTGTTAACTACTTTTGTTGTTTGGGGGATGCGTTCTTCAATCCTATTTATTC TCATTTCTTCTTTATTCAAAATTACTCTAATGAAATAATGTGCAGTAACTTGATAGGAGTAGACTTCCAATTAGATGGTT TATGAGAGTAGATTTAGGCGAGCTCTAGTTGATCGATCCCAGCCCCTAGAAGTCATTTTCATTGTTAAACTAACCTACTA ACATAGAGTTAGTTAGTTGGTAGAAGGATATATAGAGAACAACAAAAGCTGTTGAGGAGTATCCAGATTGTAAAATTGGG ATATTGATTTTTATATGTATGGCTTAAGAAGGTAGTTGCAGCTTACAAGCAAGTTAAACCCCTTGCTCTCTTGTTGACAG CAGCATATGAGTTACAAGTCAAATGGTAGAATCTTCCTGACTTTGAAAACAGTTGGGAATCAGTAACTAGACTGTCAGAG GTTTTTTCTTCGTCCCTTGGTGACAAGGTGAAAGTTTTTCTTTTTCTTTTGGGGGTGGAGGGGTATTCATAAGAATAGAC TGCCAATTAGAACTTAGAAGGGCCTATGAGAGTAGTCGTAGGGAAGCTCTAGAGGATCCCAGCCCCTAGAAGTCTTTTTA TTGTAAAACAAACCCACTAACTAACATAGAGTTAGTTAGTTGGTTACTTGCAAGAGAACAATATGGGCTGTTGAGGGGCC TTCAGATTGTAAAGGATGGACCGGTGGAGAGGGCTGAGCTCTCAAACCCGCTCAGCATTTCACTGGTATCTTTTCTCCGT TCCTAATTATATTCCGCATTGAGCAGGTTGGGAAATAGGGCTTTCTGTAATGAACACATTCTCTCTTATTTCTTGGTACC AGACCTATAATAACTCTTCAAGGATTAATTTGTATGTTTGCAATGTTATAGATCATGATATGCATTTCTCTTTTGTTTTC TTTCCAGATGCGTGACCTTGAAGGTGAACTTGAACGTAGAACAATAACCTATACCCTGTGGAACCAGTCAAAAACGGAGA ATAAAGGCTGGCATCCTGCTACTTTCAGCTATGCAAATGCTAGCCCTAAAAGGATCAAGGAAATGAAGGTTATCTTTTGC TTCCTCATACATAACTTTAGCCAGTTACGGGGTTGAAAGGATCCATTATTTGAAGTTCTTTGGGGGGAGCCGGGTTTTTT GCCCTCATTTATGAGTCTATTCTTAGGACCTTACTATGATTATCTCATGTTTTATGTTTTTTGAACAGGACATCCGCCAT GTTTATTATGAGACCGAATACCGGATAGAATGGTGTCGTACCAATTCAACATTCGTTCCGTGTTTCTTGTTTGCTAGGAA ATTCTCTCAGGGAGCTGCTATGCGCTTGTTGAGCGAGGGAGTTGTTGACCACTTTGAAATTTCTGCATTGTTAGACACTC CACCATGACATGTCTAACGCTTCTCTCGAACGTCTTTTTAGCCGTATACTGACCTGCTTAGATGTATACTTCCGGCATTA AAGGAAATCACTTCCAAGTTAGATACAGCATACAACATACGACAGATTAGATATTGGAGACAAAGGTGAGCTGACAGGGA CCATTTTATCTGGCTCAGTGAGAGGCTTGATACAACAAACCACAATTGTCCCACAGTGAACAGTCAGAGAGTAGAAAGTA GGTTATAATATAAAATGAAGCATTTAGTTTAGTGGCATCTAGAAATATTATTTTGCAAAGCTGGAATTCTAATGTCAGTC ATATTTTGAATTGTCCTCTCATGGAGGAGGATACCTGTGTTAATAGAGAGCAAGATTTGGTTAGTGAGAATTCAAGTTAT TTTGCTTTTGACTTGTATGCCAACCACTCAGACCATGAAGAGAAAGTACTTCTCACTAAATAATACATCAAGTGAATGCA AAAGCATCAATAAATGGAAGAATCAACAAACTACTGAGAAACAAGAAGAAGATGATAATTGTACCCATTCAGTGTAAGAG GCTTAAAGATAGGCTCAAAATTTCTTTGCAGTAGTATCTGACCATCCTCTTTGGCGAGCCCTGAGCTCCCATAAAGCAGT TTCTTTCATCTGATTTTCAAGTGTTGTTTCAGCTCTTTCCCTAGCCTCCTCACATGTCTCCATCCCTGAATTGCATTTGT CAGCTTCCTTTTGATACTGTGATGCTACTTTCTTAGCCTCTAAAATTTTTATGTCAGCAACTCTTTGTTTTTCCTTAGCT TTATCTTCCTTCAGCCTCAGTTCTTTGGACAAAAGCTCTATAAAACTCTTCCCCGCCTCTTCACTCACCTCTGGGTCTTG CCTCATGCAATCTATAATATATGTAATGCACTATGAATTTTTCCATGACTGAAAGGTAGCATACATTAAACTTTTATGCA TGCCTTTTAGAATTATTATCCTCCAAAACTACATATATTTTCCCCAATGTGAAACAAATTATTTGATTAATATGTAAACT TCACTTTACATATTTAATAGTGTTACTAGCCCGGTTCTAGTTTCTACTCTTTGTTGCTTTAGTGTTAAGAAAGCCCAAAA TCATAGTAAAAACTTGATGGCATGACTGGAATAATGTTATCAACTTGTGCAAGTTGCTATTTATAGGGGGAAGCCTCACC CTTCCGTCTTACAGCCATACAAAAGTAGTTTTACAATGTTTTATTTTTATCTTTGTATTGATTGATGGCAGGACCAT
CDS sequence (LotjaGi6g1v0290600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCGAGAGGAATCAAGCGCCGCCACGTTACCACTACCTTCAGCTGGAAGCTGCTGATTCTCCTCTCCGCTTCCAT CTCCTCCGTCGTCGTTTTACTTCTCTTCTTCACCTTTCACTCTGCTAACAATGTCACTCACAAACCCCCAATTCGAATTC CTCGCGTCTTCGATGGCCCACCCAAGATCGCATTCTTGTTCCTCGTTCGCCGCAACATCCCCCTTGATTTTCTCTGGGGT GCTTTCTTCCAGAATGGGGAAGTGGCGAAGTTTTCGATTTTTGTTCATTCCATGCCTGGGTTTGTGTTGGATGAGTCAAC CACCAGGTCGCACTTCTTCTACGGTCGACAACTCAGTAATAGTATTCAGGTATCATGGGGAGAATCAACTATGATTCAGG CTGAAAGATTGTTACTGGAAGCAGCTTTGGAAGACCCTGCAAATCAAAGATTTGTTCTTCTCTCCGACAGCTGTGTTCCT CTGTACAACTTTTCCTATGTGTACAATTATGTAATGGTTTCTCCAAAGAGTTTTGTGGACAGCTTTCTTGATGTGAAAGA GGGCCGCTACAACCCAAAAATGTCACCCAAGATACCAAGGGAAAAATGGCGTAAAGGTTCCCAGTGGATCACCTTAATTC GTAACCATGCAGAAGTGATTGTAGATGATGATGTTACTTTTCCTGTCTTCAAGAAGTTCTGTAAGAGACGTCCAGCAATT GATACCAGAAAGGGAAAGCTGAATCTTAAACTTCAGAAGCAGCACAACTGTATTCCAGATGAACACTATGTGCAGACATT GCTTGCGATGCGTGACCTTGAAGGTGAACTTGAACGTAGAACAATAACCTATACCCTGTGGAACCAGTCAAAAACGGAGA ATAAAGGCTGGCATCCTGCTACTTTCAGCTATGCAAATGCTAGCCCTAAAAGGATCAAGGAAATGAAGGACATCCGCCAT GTTTATTATGAGACCGAATACCGGATAGAATGGTGTCGTACCAATTCAACATTCGTTCCGTGTTTCTTGTTTGCTAGGAA ATTCTCTCAGGGAGCTGCTATGCGCTTGTTGAGCGAGGGAGTTGTTGACCACTTTGAAATTTCTGCATTGTTAGACACTC CACCATGA
Protein sequence (LotjaGi6g1v0290600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAARGIKRRHVTTTFSWKLLILLSASISSVVVLLLFFTFHSANNVTHKPPIRIPRVFDGPPKIAFLFLVRRNIPLDFLWG AFFQNGEVAKFSIFVHSMPGFVLDESTTRSHFFYGRQLSNSIQVSWGESTMIQAERLLLEAALEDPANQRFVLLSDSCVP LYNFSYVYNYVMVSPKSFVDSFLDVKEGRYNPKMSPKIPREKWRKGSQWITLIRNHAEVIVDDDVTFPVFKKFCKRRPAI DTRKGKLNLKLQKQHNCIPDEHYVQTLLAMRDLEGELERRTITYTLWNQSKTENKGWHPATFSYANASPKRIKEMKDIRH VYYETEYRIEWCRTNSTFVPCFLFARKFSQGAAMRLLSEGVVDHFEISALLDTPP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 14 | 365 | 352 | 5.1E-169 | – | |
| PANTHER | 14 | 365 | 352 | 5.1E-169 | – | |
| Phobius | 20 | 39 | 20 | - | – | |
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 40 | 375 | 336 | - | – | |
| Pfam | 63 | 316 | 254 | 7.3E-79 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi6g1v0290600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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