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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0292700 |
| Transcript ID | LotjaGi6g1v0292700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box plant-like protein, putative; TAIR: AT4G22030.1 F-box protein with a domain protein; Swiss-Prot: sp|O65451|FB333_ARATH Probable F-box protein At4g22030; TrEMBL-Plants: tr|A0A151T6S4|A0A151T6S4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0292700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61072476..61074128) extracted from Lotus japonicus Gifu genome v1.2.
CATAGGAGGGAGAACTCGGAGCACAAATACACAACGTGTGAGACAGGCATAGACTTCTCAATCCCATTGTTATCTGCATA CATACATACACATATATAAATGTACATGTGCTATGAAGAAAACACCAATTCAATCTCAACTTAGTCTTCAATCCCATACA AACCTAACCATTTTTTAACCCCTTCATAGAACAGCAATACAATAGTACTGAATACTAACACATGGCAACATTTATGGTTT CAAACAGAGTTCCTTCTTTGTCAAACTGCAGTACAAGAAGAATTTCTGCTACAATGAATGTGCCAAAGATCCAAGTGACC AAAATCTCCACCCCAAAGCTTCCCAGCAAAATTTTGGTTCCACAATTGAATCAGCTAAACAATTACACTCTAGGTACCGC CACAGCACATGTAAAAGAAGATCCTCACCTTTTAGGCATTTACACAAACAGTTCTCCAGAACCTAGAAAAAACACACCAA ATCATTCTATGGAGGTTGTGAAGCTTCACTTGATCATGGAGAATGTAGCAGACAGAATGGAGATGCACAAGAATATTGGA GCACAGCGTGATAATTGGAACCACCTTCTACTGACATCAGTTAACATGATGATTCTCTCTGCTGCATCCATGGCTGGCCT TGCAGCTGTTGCTTCAAGTGGAGCAGCACCTCTGGTGGCTCTGAAAGTTTCCTCCACAATTCTGTACATGGCTGCCACTG GCTTACTAGTGATCATGAACAAAATCCAGCCATCACAGCTAGCAGAGGAGCAGAGAAATGCTGCTAGGTTGTTCAAGTAT CTTCATGAGGAACTCAGAACAAAGCTTGCTCTTGGGAATGGGGGTTTTACTGAAAATGATGTTGATGAAGCAATGGAAAA AGTTTTGGCACTGGACAGGGCCTACCCACTTCCTTTGTTAGGCACAATGCTAGAGAAATTCCCTCAAACTGTGGAACCAG CAGTGTGGTGGCCTAAATGGAAGAAGCAAAGGAAGAATCAAACACAAGAAGGGTTTGGTGTGAAATTGAAAGGGAATAAT GGATGGGATGCAAGGTTGGAAGAGGAAATGAAACAGATTGTGAAGGTTTTGAGGAAGAAGGACAAGGCAGATTACTTGAG GTTGGGTAAGGAAGTTCTGAACCTTAACAAGATACTTGCAGTTTCTGGTCCAGTACTCACTGGAATTGCAGCTTTGGGTT CATGTTTCTTGGGTTCTGTGAATTCATCTTGGCCTGTGATGCTTGGGATTATTGGTGGAGCTTTGGCAAGTGTTGTTAAC ACATTAGAGCATGGTGGGCAATTTGGGATGGTGTTTGAAATGTACAGGGCAAATTCTGGCTTCTTTAAGTTCATGGAAGA GAGTATAGAGCAAAATGTTAATGAGCAAGACACTGATAGAAGAGAAAATGGGGAATTGTTTGAACTCAAAGTAGCTTTAC AGCTTGGTAGGAGTGTCTCAGAACTCAGGCAATTTTCTGCTGCTGCATTTTCATCCTCAGCTGAAGATGGTGATAGTCAA GAATTTGCTAGCAAGCTTTTCTAGTATTGTTGATTACCATGTCACTTTTTTTATTTTTGTAAATAAATTTGTAGAGTTTA ACTTTTGTTCATGTTATTCATCAATCAAATTCAACAAGTTGATAAGCAAGAGC
CDS sequence (LotjaGi6g1v0292700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACATTTATGGTTTCAAACAGAGTTCCTTCTTTGTCAAACTGCAGTACAAGAAGAATTTCTGCTACAATGAATGT GCCAAAGATCCAAGTGACCAAAATCTCCACCCCAAAGCTTCCCAGCAAAATTTTGGTTCCACAATTGAATCAGCTAAACA ATTACACTCTAGGTACCGCCACAGCACATGTAAAAGAAGATCCTCACCTTTTAGGCATTTACACAAACAGTTCTCCAGAA CCTAGAAAAAACACACCAAATCATTCTATGGAGGTTGTGAAGCTTCACTTGATCATGGAGAATGTAGCAGACAGAATGGA GATGCACAAGAATATTGGAGCACAGCGTGATAATTGGAACCACCTTCTACTGACATCAGTTAACATGATGATTCTCTCTG CTGCATCCATGGCTGGCCTTGCAGCTGTTGCTTCAAGTGGAGCAGCACCTCTGGTGGCTCTGAAAGTTTCCTCCACAATT CTGTACATGGCTGCCACTGGCTTACTAGTGATCATGAACAAAATCCAGCCATCACAGCTAGCAGAGGAGCAGAGAAATGC TGCTAGGTTGTTCAAGTATCTTCATGAGGAACTCAGAACAAAGCTTGCTCTTGGGAATGGGGGTTTTACTGAAAATGATG TTGATGAAGCAATGGAAAAAGTTTTGGCACTGGACAGGGCCTACCCACTTCCTTTGTTAGGCACAATGCTAGAGAAATTC CCTCAAACTGTGGAACCAGCAGTGTGGTGGCCTAAATGGAAGAAGCAAAGGAAGAATCAAACACAAGAAGGGTTTGGTGT GAAATTGAAAGGGAATAATGGATGGGATGCAAGGTTGGAAGAGGAAATGAAACAGATTGTGAAGGTTTTGAGGAAGAAGG ACAAGGCAGATTACTTGAGGTTGGGTAAGGAAGTTCTGAACCTTAACAAGATACTTGCAGTTTCTGGTCCAGTACTCACT GGAATTGCAGCTTTGGGTTCATGTTTCTTGGGTTCTGTGAATTCATCTTGGCCTGTGATGCTTGGGATTATTGGTGGAGC TTTGGCAAGTGTTGTTAACACATTAGAGCATGGTGGGCAATTTGGGATGGTGTTTGAAATGTACAGGGCAAATTCTGGCT TCTTTAAGTTCATGGAAGAGAGTATAGAGCAAAATGTTAATGAGCAAGACACTGATAGAAGAGAAAATGGGGAATTGTTT GAACTCAAAGTAGCTTTACAGCTTGGTAGGAGTGTCTCAGAACTCAGGCAATTTTCTGCTGCTGCATTTTCATCCTCAGC TGAAGATGGTGATAGTCAAGAATTTGCTAGCAAGCTTTTCTAG
Protein sequence (LotjaGi6g1v0292700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATFMVSNRVPSLSNCSTRRISATMNVPKIQVTKISTPKLPSKILVPQLNQLNNYTLGTATAHVKEDPHLLGIYTNSSPE PRKNTPNHSMEVVKLHLIMENVADRMEMHKNIGAQRDNWNHLLLTSVNMMILSAASMAGLAAVASSGAAPLVALKVSSTI LYMAATGLLVIMNKIQPSQLAEEQRNAARLFKYLHEELRTKLALGNGGFTENDVDEAMEKVLALDRAYPLPLLGTMLEKF PQTVEPAVWWPKWKKQRKNQTQEGFGVKLKGNNGWDARLEEEMKQIVKVLRKKDKADYLRLGKEVLNLNKILAVSGPVLT GIAALGSCFLGSVNSSWPVMLGIIGGALASVVNTLEHGGQFGMVFEMYRANSGFFKFMEESIEQNVNEQDTDRRENGELF ELKVALQLGRSVSELRQFSAAAFSSSAEDGDSQEFASKLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 440 | 440 | 6.4E-174 | ||
| Phobius | 1 | 121 | 121 | - | – | |
| Pfam | 94 | 416 | 323 | 3.2E-154 | ||
| TMHMM | 122 | 144 | 23 | - | – | |
| Phobius | 122 | 145 | 24 | - | – | |
| Phobius | 146 | 150 | 5 | - | – | |
| TMHMM | 149 | 171 | 23 | - | – | |
| Phobius | 151 | 171 | 21 | - | – | |
| Phobius | 172 | 310 | 139 | - | – | |
| TMHMM | 311 | 333 | 23 | - | – | |
| Phobius | 311 | 333 | 23 | - | – | |
| Phobius | 334 | 338 | 5 | - | – | |
| TMHMM | 337 | 359 | 23 | - | – | |
| Phobius | 339 | 355 | 17 | - | – | |
| Phobius | 356 | 440 | 85 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0292700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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