Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi6g1v0296000
Transcript ID	LotjaGi6g1v0296000.1
Related isoforms 1	LotjaGi6g1v0296000.2
Lotus japonicus genome version	Gifu v1.2
Description	Protein kinase; TAIR: AT3G20530.1 Protein kinase superfamily protein; Swiss-Prot: sp\|F4JEQ2\|PBL23_ARATH Probable serine/threonine-protein kinase PBL23; TrEMBL-Plants: tr\|A0A151U0T9\|A0A151U0T9_CAJCA Serine/threonine-protein kinase PBS1; Found in the gene: LotjaGi6g1v0296000
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr6:61370575..61374293) extracted from Lotus japonicus Gifu genome v1.2.

CTAAGTGAAACTTGAATTAAAAAGTTTGTAAAATTAGTAAAAACAAGTTGGTATCCTTGTCACTATTACCTTGCAAGGGA TAAAGTGTCTAAGAAAACCAGCTAAGATAGCTTTGTTATTGAATTCCATGTTCAATGCCCAAAACTAAAATAAGTAATAG TATTTCCCTCACAAACACATATAAAGCATTTTCCAGTATTTGGAACTGCACAACCTCTTACAGTTTCACAGTTTCAACAA ATTAACAATACCTTACCATTTCCCCCAGTTTCAAAAATTTAACCATATTTATTGTACCATCTACGCCCTGTACCCTCTTT TTGCAAATTGTCTAAGAGAGATATCTGTGTAAATTGATTAAGAATTTATTACAGGATTTGCACTGAAGGTTTGAGAACAA GAATATAAATTCCACCAACAAGGTTTGAGAATATGAGGTGTTTCACATGCTGCAAGTCAGACATTGAAACACCCTCTTTC AGGAAAGTTTCCAAAGGCAGAAGAACATTCAAATCAATTGCAGCTGCTATGTCACTCAAATCAGGTGCGTGGTAATTGTC ATTTCACATGTATCCAAAAAAATGTGGTATGATTATTCTTTCTTCAATATACCTTGCAGACATGCAAACCTTCTTTTTTT TCCTGATCAATTCAGATATTCTGTCGTCTTTGCGGGCAATAAATCCTTGTAAACTCTTAAATTTAATATAAACACTATTT AAATGAATCTTATTCCATTGATTACAAAAATAAGAGGCAATAATTGTTCAGGAGGAGAAATCTGTGTGAATATTAGGTTA CAATATTCTAACAATCTGTTACATCAGATCCAAATTGTTAATTTTTCATTTATTCATTTCCTGTCATGTTCTAGGATTTA GAGTTCTGAAAATCAAGGAGAGAATATATAATGACATTGTCCAAGCTATATGAGCAAAATCCATAACATGTTTCATATTA AGAAACAATTCATGGCATCAAATGGAAATGTTGGGTGGTCTCAAATTAAATAATTGCAGGTAGCAGCAGGCATAGACAAA TCAATGAAGAGATATTAAAATATGGAGCTGCAAAAAACGACATTAACATATTCACATATGAAGATCTGGTTGATGCAACA AACAACTTCAGTCCTGATTGTCTGGTGGGAGAAGGTGGATTTGGGAATGTCTATAAAGGATACATAAAGAGCATTGATCA GGTCTCCCTCCCTCCCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATAGGTTTAGCTATT TAAATGTTATGATTATGAAAGTCTCATGTTAAATGTTTGGTGTTCAGACTGTAGCGGTTAAGCAACTGAACAGGGAAGGA GCTCAAGGAACAAGAGAATTTTTCGCAGAGGTTTTGATGTTAAGCATGGTGAACCACCCAAACCTTGTTAGGCTCGTTGG TTATTGTGCAGAAGGTGATCAAAGGGTTTTAGTCTATGAATACATGGCCAATGGAAGCTTAGAAAGTCATCTTCTAGGTA TGTTGTCAAAACATTCTCAGTGCATGCTTTGAAAGTCCTTCTAGAATTAACTCTAAAATCAAAATCAATTACGAGGGAGA AGTTTATGTTAATCGCTTCTGCCACTTTGTGGCAGAATTAATTCTGAGGCAATATAAGTAAGGAAGTTGATGCAGTATGT TTGATCAGCTTCTCTTTCCTCATAGTCATATCCAACAAGCTAACTTTTTCACAAAATTGATTCTGATGTTAAAATTAATT GTTGAAGAATTTTCAAATATACATCTATAGCTTGCAATTGCAATTAAGTAACAAATTTTGATTCAGTGCCCTCTCAAAAA ATTCCTACATTCATGCAGTCGAGGAATCTGAGTCGCTCAATTAAGATCGGATGACTCGAACTTTAAATTATCTCTATTTT CCGATCTTTGATGAAATATACGAGTCAGATTCTTTGACTACATGGATGTAGGATTGTCCACAGCCCAAATCCTTGACTGA CCAGAGTGAATTTGATTTATGACAGAGTTAGGTGAAGATATGGAGCCTTTGGATTGGCATACAAGGATGAAAATTGCTGA GGGAGCAGCTAGAGGACTTGAATATCTGCATGACAGTGCAGACCCCCCAGTGATATTCCGTGATTTCAAGTCGTCAAATA TACTTTTAGATGAAGATTTCAACCCAAAGCTCTCTGATTTTGGACTTGCAAAGATTGCTCCAGCAGAGGGGTTCCAGAAC CATGTCTCAACCAGGGTGATGGGGACCTATGGCTACTGTGCACCAGAGTATGCTGCAACAGGTCAATTAACATCAAAATC AGATATTTATAGTTTTGGGGTTGTGTTCTTGGAAATAATCACTGGTAGGAGAGTAATTGACACTGCAAGAGTTACAGAAG AACAAAACTTGATTGACTGGGTATGACACATTCCTTCATCTTGTTTAGAAAACTTGATTGACTAATGCAAGAAAACTTGA TTTCAGGTAGAAAAAATGATATGTAGTTGTAAGTTTTAGTTCATATCTGCATTTTTCGCAGTTGATTTTAGTAAAATTGA TTATAGACATAGTAAATTGAGTTGAAAGTTGAGTAATTTATGTTTAGATACATTTATGAGAAAAGTGATTTTTGTTGGAT AATGTTGTGAAATTCATTTGTAAACAATTGATTATGTTCGACGTAGAAGCTACTAGTATGCATGTTTGGAAAGCAGAATC AATTCTATTTGGTTAATATTAATTCTAAGAAGTAAAATGATGTTTGAGTGTACTAGTAAAGTTGATTTCTATGGTCAAGA ATCAATCCTCCTTGCTACAACAAATAGCCATTTCTGCGGTAAACAATCAATTTTGAGATTTTACAACTGAATTTCAACAA AAACCTTTTCTTCCAAACGCACATTATCTCTAGCTTCTACCAGAATTGATTTTCGGTCTAAAATCAAATGTCCAAAATAA CTCTCAAACATCAATATTTTCATTCAGAATTAACTTTACTCTACCAGAATTTTTCTGCGATTTCCCAACTGGAAACCAAA CACATTCTTAAAGGCTGTTCTTTTTTCTCATGTTGGCAGGCACAACCTCTATTCAAGGACAGAACAAAGTTCAGTCTAAT GGCTGATCCTTTGCTCAAAGGCCGGTTCCCTGTGAAAGGTTTATTTCAAGCCCTTGCAGTTGCAGCAATGTGTTTACAAG AGGAAGCTGACACACGACCTTACATGGATGATGTTGTAACTGCCCTTGCTCATCTAGCAGAGCAGAGAACTGAAGAGAAA GACATTGCTGGTGAATCTATAAAAAGTGCTGGCCATGTTGAATCCTTTAGAGGTGCAAGTTCAATGGCATCCGAAAGGGC GTAGCCAACACTGAAAAACTTGGAAGAGCAAGCTGAAAAAATGGTGTACAAAGATGAACGTGCTTAGGTGTATTTCTGTT TGTTTGATATCCTTCTGTTAACACTTTAGATTGTGATGTGATGGTATCCTTTTTGGGATTGAAATCTGCATCCCTTCAAT CTAATCTATTTTCCTTTTTCTTCTTTTTGAAGAAAAAGATTTTCTGTTTCCATTTGATTCCCACCTTTGCACATACCATA CTAGATCTCAAAAGGACAAATGTATACTCCCCAATTACAAATATGTTATTTGATAAATGTACATTGCATTTGTCATCTAT GTAATTATAGCCTGAGTGTAAGGTATCAGAGGAATTCAG

Download Genomic Sequence

CDS sequence (LotjaGi6g1v0296000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGGTGTTTCACATGCTGCAAGTCAGACATTGAAACACCCTCTTTCAGGAAAGTTTCCAAAGGCAGAAGAACATTCAA ATCAATTGCAGCTGCTATGTCACTCAAATCAGGTAGCAGCAGGCATAGACAAATCAATGAAGAGATATTAAAATATGGAG CTGCAAAAAACGACATTAACATATTCACATATGAAGATCTGGTTGATGCAACAAACAACTTCAGTCCTGATTGTCTGGTG GGAGAAGGTGGATTTGGGAATGTCTATAAAGGATACATAAAGAGCATTGATCAGACTGTAGCGGTTAAGCAACTGAACAG GGAAGGAGCTCAAGGAACAAGAGAATTTTTCGCAGAGGTTTTGATGTTAAGCATGGTGAACCACCCAAACCTTGTTAGGC TCGTTGGTTATTGTGCAGAAGGTGATCAAAGGGTTTTAGTCTATGAATACATGGCCAATGGAAGCTTAGAAAGTCATCTT CTAGAGTTAGGTGAAGATATGGAGCCTTTGGATTGGCATACAAGGATGAAAATTGCTGAGGGAGCAGCTAGAGGACTTGA ATATCTGCATGACAGTGCAGACCCCCCAGTGATATTCCGTGATTTCAAGTCGTCAAATATACTTTTAGATGAAGATTTCA ACCCAAAGCTCTCTGATTTTGGACTTGCAAAGATTGCTCCAGCAGAGGGGTTCCAGAACCATGTCTCAACCAGGGTGATG GGGACCTATGGCTACTGTGCACCAGAGTATGCTGCAACAGGTCAATTAACATCAAAATCAGATATTTATAGTTTTGGGGT TGTGTTCTTGGAAATAATCACTGGTAGGAGAGTAATTGACACTGCAAGAGTTACAGAAGAACAAAACTTGATTGACTGGG CACAACCTCTATTCAAGGACAGAACAAAGTTCAGTCTAATGGCTGATCCTTTGCTCAAAGGCCGGTTCCCTGTGAAAGGT TTATTTCAAGCCCTTGCAGTTGCAGCAATGTGTTTACAAGAGGAAGCTGACACACGACCTTACATGGATGATGTTGTAAC TGCCCTTGCTCATCTAGCAGAGCAGAGAACTGAAGAGAAAGACATTGCTGGTGAATCTATAAAAAGTGCTGGCCATGTTG AATCCTTTAGAGGTGCAAGTTCAATGGCATCCGAAAGGGCGTAG

Download CDS Sequence

Protein sequence (LotjaGi6g1v0296000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRCFTCCKSDIETPSFRKVSKGRRTFKSIAAAMSLKSGSSRHRQINEEILKYGAAKNDINIFTYEDLVDATNNFSPDCLV GEGGFGNVYKGYIKSIDQTVAVKQLNREGAQGTREFFAEVLMLSMVNHPNLVRLVGYCAEGDQRVLVYEYMANGSLESHL LELGEDMEPLDWHTRMKIAEGAARGLEYLHDSADPPVIFRDFKSSNILLDEDFNPKLSDFGLAKIAPAEGFQNHVSTRVM GTYGYCAPEYAATGQLTSKSDIYSFGVVFLEIITGRRVIDTARVTEEQNLIDWAQPLFKDRTKFSLMADPLLKGRFPVKG LFQALAVAAMCLQEEADTRPYMDDVVTALAHLAEQRTEEKDIAGESIKSAGHVESFRGASSMASERA

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Gene3D	G3DSA:3.30.200.20 View details on G3DSA:3.30.200.20 Search for proteins/transripts with this domain View external data on G3DSA:3.30.200.20	33	150	118	1.7E-34	–
PANTHER	PTHR27001:SF719 View details on PTHR27001:SF719 Search for proteins/transripts with this domain View external data on PTHR27001:SF719	37	363	327	2.0E-178	–
PANTHER	PTHR27001 View details on PTHR27001 Search for proteins/transripts with this domain View external data on PTHR27001	37	363	327	2.0E-178	–
SUPERFAMILY	SSF56112 View details on SSF56112 Search for proteins/transripts with this domain View external data on SSF56112	59	347	289	2.83E-80	IPR011009 Show description in modal box View details on IPR011009 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50011 View details on PS50011 Search for proteins/transripts with this domain View external data on PS50011	74	352	279	36.188	IPR000719 Show description in modal box View details on IPR000719 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00069 View details on PF00069 Search for proteins/transripts with this domain View external data on PF00069	79	288	210	2.2E-46	IPR000719 Show description in modal box View details on IPR000719 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSitePatterns	PS00107 View details on PS00107 Search for proteins/transripts with this domain View external data on PS00107	80	103	24	-	IPR017441 Show description in modal box View details on IPR017441 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd14066 View details on cd14066 Search for proteins/transripts with this domain View external data on cd14066	80	349	270	8.74486E-98	–
Gene3D	G3DSA:1.10.510.10 View details on G3DSA:1.10.510.10 Search for proteins/transripts with this domain View external data on G3DSA:1.10.510.10	151	374	224	9.6E-59	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	360	387	28	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0004672 View details of GO:0004672 AmiGO InterPro QuickGO	Molecular function	Protein kinase activity	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.	Subterm of View details of GO:0016301 View details of GO:0016773 View details of GO:0140096
GO:0005524 View details of GO:0005524 AmiGO InterPro QuickGO	Molecular function	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.	Subterm of View details of GO:0008144 View details of GO:0032559 View details of GO:0035639
GO:0006468 View details of GO:0006468 AmiGO InterPro QuickGO	Biological process	Protein phosphorylation	The process of introducing a phosphate group on to a protein.	Subterm of View details of GO:0006464 View details of GO:0016310

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0296000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi6g1v0296000.1