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LotjaGi6g1v0297500.1

Overview

Field Value
Gene ID LotjaGi6g1v0297500
Transcript ID LotjaGi6g1v0297500.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Dihydroxy-acid dehydratase; TAIR: AT3G23940.1 dehydratase family; Swiss-Prot: sp|Q9LIR4|ILVD_ARATH Dihydroxy-acid dehydratase, chloroplastic; TrEMBL-Plants: tr|I1M137|I1M137_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0297500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:61499662..61506206) extracted from Lotus japonicus Gifu genome v1.2.

CCCAATTCCATCACGAGATTCACAAGTGTAAGAAATAATTTTGAAGCAACGACAAAATGCAATGATGTCTCAATCTGTGT GTATAAACCCAGCTTCGATTCTGCTATCTTCCCACCCCTAAACCCTCATTTCCTAACTATCTCTTCTCCTCTCCACTCTG CTCCGCCGTCATCCACCGCAAAACAATGCAGTCCACTCTCTTCTCCCCCACCATTTCCCCTCTCCTCCCCACCTTATCCC ACTCCCATCCTCGCCGTACAGTGCGAGCCTCCGTCGCCGCCGTCGAAACCCAGACCAAGCTCAACAAGTACAGCTCCCGC ATCACCGAGCCCAAGTCTCAGGGCGCCTCTCAGGCCGTCCTATACGGCGTGGGCCTCTCCGAAGATGACATGACCAAACC CCAAGTCGGCGTTTCCTCCGTCTGGTACGAGGGAAACACCTGCAACATGCACCTCCTCGACCTCTCTGAAGCCGTCAGGG AAGGTGTTGCTCAGGCCGGGATGATCCCCTTCAGGTTCAACACCATTGGGGTGAGTGATGCTATCTCCATGGGTACCAGA GGTATGTGCTATAGCTTGCAGTCAAGGGACCTCATTGCTGATAGCATTGAGACTGTCATGGCTGCTCAGTGGTATGATGC CAATATCTCCATTCCTGGCTGTGACAAAAATGTAAGAAATTTTCACTCCTTTTTTACCTTATCTCTTTTGAGCATGTTTT GCAACTCAGTTCAGTTCAGTTCAGTGATGTGGTGTCTCTTCGTATTTTTGCAGATGCCAGGTACAATCATTGCAATGGGG CGGCTCAACAGACCCAGTATTATGATTTATGGTGGGACTATTAAGGTAAATGCCATTCTAGATTGGAAGTAGTTCAAGTA TGTTTTCTGAAATCATATGACTAAAGGGGTGCTGAACTTTGTCATTTTGTTGTTCAAAACTCTAACACTCCCACTTCCTT AGAAGGGGGGGGGGAAACAATTCCTCAGTCGATGAAAGTATCACTGTGCAGGCCTATTTTTTGTTATTATAGTTATCTGA TAAATTTGTAGTTGGGGTTGGATAGTCAGCAAATGTTTTATGGTGGGTGGTTTGTGTGTGTGTGCTTTCTGTGATTTAAG GGTCATACTCGTACTTGACATCATAGAATTTAAGATAATCATATGGTTTTTTTTGAAGGGGATCATACCACTTTGTCAAT ATTTACAAGGAATTTTATTGCAATTTGATGTAGGGTAGAGTAAAGCAATTCCCTTGATTAAAATTAATGTGCTTCAGGGG AAATTTGGATAGTAGGGAAGTCGGATTACAACCACTATTTTAAATTTACAATGTCTTGGAGCTTTTTTAACTGCAAGCTG CACATGCAATCCATGTAACACTTATGCAGTTAATATCAAGTATGGGTTGTTTATTTTCTTATAAACTGATGAAAATTTCT TTTTCCCTCTGAATTGTGGTTCGATTCAGGTGCATTTGTTAATTTTGTTTCTCTGTTTTTTTTTTCAGCCTGGTCATCAT CAGGGTAATACATATGACATAGTGTCTGCCTTTCAGGTATGAGAAGCCATTATTGTTTGAATCTCTTCCCATCTCATATT GTGGTTGAATTACTTTTCTTTCTTTTATTTCATACTCATTCAAACAGAACTCAATTTTGTTAAATAAAAGATTTTATTTC TTCAAGAGTAGGAGAAGAAATATGACAGAGAAGTGCATCAAACCTTCTTTGAACAATGAGAAAATGAAAGTGAATAAAAA AAACTGAAAAGAGCTCTCCTAGCCCTTTTCTCTTATGAAAATATTCTCTTTTTTTGGGAGACATTGTAAGGGTAACTTTT ATATTGCCACTGAGGAAGAATTGAATCATTTTGGTTTTTGTATACTCTTTTGAGTAATTGAGTTCTCTTTTTAAACAAAT AAATATGTTATTGCTCATGTTGGAAATACTAAAGTTCATAATATAAATTTGTTTTCCCTAAATTTCAAAACTTGAATGTG TTTGGTTTTCATGTAGTGCTATGGAGAATATGTGAGTGGATCCATTAGTGATGCCCAGAGACAAAGTGTTATCCGTAACT CTTGCCCTGGTGCTGGGGCTTGTGGTGGAATGTATACAGCTAATACCATGGCATCTGCAATAGAAGCTATGGGAATGTCA ATTCCCTATAGGTAAGTATATGTGTAGATTCTTATGTGTCTTATTTTAAACGTGCTTATCTTTATTTGCTGTTAATGTAG CTCATCTACCCCTGCTGAGGATCCTCTAAAGTTGGATGAGTGTCGTTTAGCTGGGAAATATATTCTGGAGCTATTGAAGA TGGACTTGAAGCCCCGAGACATAATCACTCGTAAATCACTACGCAATGCAATGGTTATTGTTATGGCACTTGGTGGATCT ACAAATGCTGTTTTGCATTTAATTGCTATTGCCAAGTGAGTGAAGCTTTGTGCCAGAGATCCTATTGATATCCATTAATC CTCAGAGAAACCTCATGTAATGATTTTCGCAGGTCTGTTGGCATTGATTTGACTCTTGATGATTTTCAAAAGGTTAGCGA TGAAGTTCCTTTTCTTGCAGATCTTAAACCCAGTGGGAAATATGTTATGGAAGATGTTCACAAGGTATGCATTTAATGTT TTTTGTTAACTAATTGAAGGTTGCGTCTATTATTATTTTTTACTAGTTATGCTTATGGTTCTTATGCTATTTAATATTTA TTAATCCTGCTTGAAATTCCTTTTCAATTCTCTTTTTGATAGATCGGAGGCACCCCTGCAGTTATGCGATACCTTCTTGA GCAAGGATTTTTAGATGGTGACTGTATGACTGGTATGTCCACTTACCTTTTTGTGCTAAGAACAGAGTATTCTTTTCCGA AAAAATATCCATGTCTAACATACATATGTCTCCTCTCTAGTCACTGGAAAGACCCTAGCTGAAAATACAGAACTTGTCCC TCCTTTGGCAAAAGGGCAGGTATGAGCATGATATTTTTCATGTTAAACTTTATCATATCCGAACTGTTCCTGATTACTGT TAATAATTTGATCTTTTATAAAGTACCAATTTCCTGTATGTGATTCAGGAAATAATAAGGCCAATAGACAATCCCATTAA GAAGACAGCACATATCCAAATATTATATGGGAACCTTGCACCACAGGGATCTGTTGCCAAAATTACTGGAAAAGAGGGAC TGTACTTCTCTGGTGAACTTTCTTGCTCTGTTTTCTTGGTGTTATAAAATAATTGGTTTGCCCAAATTACATTTCTCTTT GCTACAATTTATTAATAATGGCATATTTCAACAGGTCCTGCACTTGTTTTTGAAGGGGAGGAGGCAATGATTTCTGCCAT TTCAGAGGACCCTTCAAGTTTTAAGGTATCTATTTTACCTAGAAATAAATGCATAGGGATAGTGCTGATCCTAGGGTTGT GTAGAGACTCACCATACTGTTACTTGAATGAAGTCTCAGTAATTGAGATTTTGAATAGGTTTAGTTCATATGTGTTAATC AACCTATATTAACATCAAATTATGAGATCCATGTTGATCACAGTCTTGAATCTCTTGATGACATTGGGTGGAAGCACAAA CAAAATGAAAATGGGGGCTGGGTATTGTTATAGCAAAATGACATAGAAACCACTAAGCAGAGCAGAAGGGAAATTCCTTT AGATAAAATCTGTGAGTTTCATTGTGTACTGTTCTACCCATAGAAAATCCTTTGACTGGCAAGCAAACAATCTTCTAGGA CGTGTATTCTTTAATTCTATTATAATTATTTTAAGTACCTAAAATAAATTGATAAAGTCCCTAAAAATAATACCTAGAAA GGCTACCATTAAATTATCAATTGAGAATATCAGTATACTTAAGCAACATAATTGTGCCTAAAACAACATGGCTTAGTCCT GCATATTAAACCATTAGATGTTAATGTTTCCTTATTAAACTTCAGAGTTTCGCTTTTTAAAATGAAATATGATTTTAGTA ATTGAAATTACGGAATGATTCTGTTAAAATGCAATTTAGTTGAGCAGTAACCACGACCATCAATTTATGACATATATTTT ATGGTGTAGTTGTGAATCCTTTAGCAACTATACACTTGTCTCAAAAGCGGGATGCAACTTTTTTCCAAAGGAAGAATTCT TGCTTTTGGCAGAATATATGTTGGAATTGCTTCTCAATTTTAAAGTAAAACATACACTTAGTTGCTAGAGTCTCAGTGGT TTGCTTCTGTTTTGATTATTACACTTGTTGCACAAATTTTTTATTTGGAGCTATAGATCATAGTTCAAATTGCTGCTATT TTTAAGATCTTTTCTGATTCCTCCGTATGACATTTAACTTTAGGGGAAAGTGGTTGTAATAAGGGGAGAGGGACCTAAGG GTGGTCCGGGCATGCCTGAGATGTTAACACCAACAAGTGCAATAATGGGTGCAGGCCTCGGAAAGGTATATCTTGCATCT CCTTATTTATTCTATTAATTAAGTTTGTAATGGTGGTATGCGCATTGTGATTTACAACTATGAACTGACCTGAAGGGCTT TTAATTTTATCTTATTTTTATACTTTTTGTTTAGCCAAATGTATGTATAAACTCTAAAGTCGCTTGATTATTAGTTTTTT AAATAGAAACTATAATGCATCTTTCATGATTTATGAACTTACTCTGAACTGGTATTTTTTTTTGATATTTTTTTGACGCT TCAGGATGTTGCACTATTGACTGATGGAAGATTTTCTGGAGGTTCACATGGGTTTGTGGTTGGTCATATATGCCCTGAAG CACAGGTGAATTGACAATGCGGTAGCGTTTTGGTTTATTGAAAAAATGAAATAATGACTGTTATGTGATGATTAACCATT ATGACTTGACATGCTTTTATTTTCCATTTCTACTGTGACATGTTCAATTGTTCATATTTTAATCCATATGAAGATAAAGA ACCTTAATTATAGTTTGTTGTAGCGAACCAGTAATATTTACACTTGCTTCATTGATTTGATAGGAAGGTGGTCCAATTGG TTTAATTCAAAATGGAGATGTTATCAACGTTGATATCAAGAATAGGAGAATTGATGTTTTGGTACCAGATGAGGAGATGG AAGCACGCAGGAAGAAATGGACCGCTCCTCCATACAAAGCAAACCAAGGAGCTCTCTACAAGGTATGAGAACTGGAACAC CTTATGGACAAAAAATATGAAATATATTTATAAAGATCTGATTACCTTTTATTCCTTTATCTTATAATGAATACTATTTT GGCGAGTTTAGTCCCTCTAATTATAATTGTTACTGTTAGAATTTAGTTCTGTAAGTTGTGAATAGATTTATCCTCATCTT TTTAGACACTCTTAGTATAGAGAGGTTTTAATGATGTATTTGATGGAAAAGACAGCTTAGGCATAGCATTCTTGGGTATT CTTAATTGGTGTTGGTGTGGTCCAACACGGGTAAAATTTGCAGAAAATAAAAGGATCTTTGAAGGACAGATGTGGTTGAA CAACTTGAAGGTCCAAAGTATAGCACATGAAAAATATAGGGATGGAAATAATTTTTTTATTGAAATTAGAGGACCTTGTA CTTAGACAACAATCAGCATCTTATGGATAGTGCATATGAAACATGATCTACACTTGTTGCTAATTTTTTCTTCCTGTGTT TTAAGCTTACATATGTTTTTCTGCACACAGTACATTAAAAATGTGACAAATGCTTCTAGAGGATGTGTGACAGACGAGTA GAGTGAACGCATTTTTGGTGGTTCTGAGAGGAAGAACTGATCACACACCTAAATAGCGTTTTGATGAGGTGTTATTATTT TGGCTTCAAGGGTGCATACCTTTGTAGCTCGGTGTATCTCTTGTTAGATTTTCATTACTTTTTTGTTATATTATTCTGAG ATTAAATCCAATCTCTCTTTTCTCTTTCATCGTTTGTGATCTTCTTAGCTTTAGGTTTTTATAGTTGTTGAAATTTGTAT CAGTTAGTGATAAATGTTGGTTTGTCGCCATGGGAAAATTCACTTGTACCAGTTGGCAGAAGTTCAACAATGTAAAAGAG GGCCACAGCATGTAAAGACTCTTACAATGGTTATATTTTGAGAAATGTTTCCTCGATTAGTTCTTTGTTTGGTCATTTTG ATTAGTGATTATGGGGCTCTTTAACTCTATGCTTTTGGGGTTTTGTACGTGGTTACTAATCAGATTTGTTAACAATATAA AGGAGAAATCTTATATATGCCCTTTAAGCAAAATAGAGAATCTCATAAATGGTTAGTTTTTTTCTTTATCTCAATTTTTA AACTAAAAATAAAAGAAAATCGAATAGGTAGAGGGCATCCAGTAAGTTATACAAATGGGAGGCGGCTACAAGAAAAGGTG AAGGAAGCATGTGCTTCACTGGAATATAACAACTGGACAAGACAATATTTTGTTGATCTAGACAAGACCAAACCATCCAT GTTATGATATGATGTTCTGGATAGGGATGGATTGACAGACGTACGTACGGATTGTCAACAAAGGC
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0297500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAGTCCACTCTCTTCTCCCCCACCATTTCCCCTCTCCTCCCCACCTTATCCCACTCCCATCCTCGCCGTACAGTGCG AGCCTCCGTCGCCGCCGTCGAAACCCAGACCAAGCTCAACAAGTACAGCTCCCGCATCACCGAGCCCAAGTCTCAGGGCG CCTCTCAGGCCGTCCTATACGGCGTGGGCCTCTCCGAAGATGACATGACCAAACCCCAAGTCGGCGTTTCCTCCGTCTGG TACGAGGGAAACACCTGCAACATGCACCTCCTCGACCTCTCTGAAGCCGTCAGGGAAGGTGTTGCTCAGGCCGGGATGAT CCCCTTCAGGTTCAACACCATTGGGGTGAGTGATGCTATCTCCATGGGTACCAGAGGTATGTGCTATAGCTTGCAGTCAA GGGACCTCATTGCTGATAGCATTGAGACTGTCATGGCTGCTCAGTGGTATGATGCCAATATCTCCATTCCTGGCTGTGAC AAAAATATGCCAGGTACAATCATTGCAATGGGGCGGCTCAACAGACCCAGTATTATGATTTATGGTGGGACTATTAAGCC TGGTCATCATCAGGGTAATACATATGACATAGTGTCTGCCTTTCAGTGCTATGGAGAATATGTGAGTGGATCCATTAGTG ATGCCCAGAGACAAAGTGTTATCCGTAACTCTTGCCCTGGTGCTGGGGCTTGTGGTGGAATGTATACAGCTAATACCATG GCATCTGCAATAGAAGCTATGGGAATGTCAATTCCCTATAGCTCATCTACCCCTGCTGAGGATCCTCTAAAGTTGGATGA GTGTCGTTTAGCTGGGAAATATATTCTGGAGCTATTGAAGATGGACTTGAAGCCCCGAGACATAATCACTCGTAAATCAC TACGCAATGCAATGGTTATTGTTATGGCACTTGGTGGATCTACAAATGCTGTTTTGCATTTAATTGCTATTGCCAAGTCT GTTGGCATTGATTTGACTCTTGATGATTTTCAAAAGGTTAGCGATGAAGTTCCTTTTCTTGCAGATCTTAAACCCAGTGG GAAATATGTTATGGAAGATGTTCACAAGATCGGAGGCACCCCTGCAGTTATGCGATACCTTCTTGAGCAAGGATTTTTAG ATGGTGACTGTATGACTGTCACTGGAAAGACCCTAGCTGAAAATACAGAACTTGTCCCTCCTTTGGCAAAAGGGCAGGAA ATAATAAGGCCAATAGACAATCCCATTAAGAAGACAGCACATATCCAAATATTATATGGGAACCTTGCACCACAGGGATC TGTTGCCAAAATTACTGGAAAAGAGGGACTGTACTTCTCTGGTCCTGCACTTGTTTTTGAAGGGGAGGAGGCAATGATTT CTGCCATTTCAGAGGACCCTTCAAGTTTTAAGGGGAAAGTGGTTGTAATAAGGGGAGAGGGACCTAAGGGTGGTCCGGGC ATGCCTGAGATGTTAACACCAACAAGTGCAATAATGGGTGCAGGCCTCGGAAAGGATGTTGCACTATTGACTGATGGAAG ATTTTCTGGAGGTTCACATGGGTTTGTGGTTGGTCATATATGCCCTGAAGCACAGGAAGGTGGTCCAATTGGTTTAATTC AAAATGGAGATGTTATCAACGTTGATATCAAGAATAGGAGAATTGATGTTTTGGTACCAGATGAGGAGATGGAAGCACGC AGGAAGAAATGGACCGCTCCTCCATACAAAGCAAACCAAGGAGCTCTCTACAAGTACATTAAAAATGTGACAAATGCTTC TAGAGGATGTGTGACAGACGAGTAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0297500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQSTLFSPTISPLLPTLSHSHPRRTVRASVAAVETQTKLNKYSSRITEPKSQGASQAVLYGVGLSEDDMTKPQVGVSSVW YEGNTCNMHLLDLSEAVREGVAQAGMIPFRFNTIGVSDAISMGTRGMCYSLQSRDLIADSIETVMAAQWYDANISIPGCD KNMPGTIIAMGRLNRPSIMIYGGTIKPGHHQGNTYDIVSAFQCYGEYVSGSISDAQRQSVIRNSCPGAGACGGMYTANTM ASAIEAMGMSIPYSSSTPAEDPLKLDECRLAGKYILELLKMDLKPRDIITRKSLRNAMVIVMALGGSTNAVLHLIAIAKS VGIDLTLDDFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVMRYLLEQGFLDGDCMTVTGKTLAENTELVPPLAKGQE IIRPIDNPIKKTAHIQILYGNLAPQGSVAKITGKEGLYFSGPALVFEGEEAMISAISEDPSSFKGKVVVIRGEGPKGGPG MPEMLTPTSAIMGAGLGKDVALLTDGRFSGGSHGFVVGHICPEAQEGGPIGLIQNGDVINVDIKNRRIDVLVPDEEMEAR RKKWTAPPYKANQGALYKYIKNVTNASRGCVTDE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF143975
23 412 390 1.31E-139
IPR037237
PANTHER
PTHR21000
32 594 563 0.0 –
PANTHER
PTHR21000:SF5
32 594 563 0.0 –
Hamap
MF_00012
41 593 553 41.764
IPR004404
TIGRFAM
TIGR00110
55 593 539 2.1E-224
IPR004404
Pfam
PF00920
71 590 520 1.0E-215
IPR000581
ProSitePatterns
PS00886
159 169 11 -
IPR020558
Gene3D
G3DSA:3.50.30.80
414 564 151 2.4E-52
IPR042096
SUPERFAMILY
SSF52016
415 593 179 9.42E-56 –
ProSitePatterns
PS00887
501 512 12 -
IPR020558

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004160
Molecular function Dihydroxy-acid dehydratase activity Catalysis of the reaction: 2,3-dihydroxy-3-methylbutanoate = 3-methyl-2-oxobutanoate + H2O.
Subterm of
GO:0009082
Biological process Branched-chain amino acid biosynthetic process The chemical reactions and pathways resulting in the formation of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0297500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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