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LotjaGi6g1v0297500.2

Overview

Field Value
Gene ID LotjaGi6g1v0297500
Transcript ID LotjaGi6g1v0297500.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Dihydroxy-acid dehydratase; TAIR: AT3G23940.1 dehydratase family; Swiss-Prot: sp|Q9LIR4|ILVD_ARATH Dihydroxy-acid dehydratase, chloroplastic; TrEMBL-Plants: tr|I1M137|I1M137_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0297500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:61499790..61504987) extracted from Lotus japonicus Gifu genome v1.2.

TTTCCTAACTATCTCTTCTCCTCTCCACTCTGCTCCGCCGTCATCCACCGCAAAACAATGCAGTCCACTCTCTTCTCCCC CACCATTTCCCCTCTCCTCCCCACCTTATCCCACTCCCATCCTCGCCGTACAGTGCGAGCCTCCGTCGCCGCCGTCGAAA CCCAGACCAAGCTCAACAAGTACAGCTCCCGCATCACCGAGCCCAAGTCTCAGGGCGCCTCTCAGGCCGTCCTATACGGC GTGGGCCTCTCCGAAGATGACATGACCAAACCCCAAGTCGGCGTTTCCTCCGTCTGGTACGAGGGAAACACCTGCAACAT GCACCTCCTCGACCTCTCTGAAGCCGTCAGGGAAGGTGTTGCTCAGGCCGGGATGATCCCCTTCAGGTTCAACACCATTG GGGTGAGTGATGCTATCTCCATGGGTACCAGAGGTATGTGCTATAGCTTGCAGTCAAGGGACCTCATTGCTGATAGCATT GAGACTGTCATGGCTGCTCAGTGGTATGATGCCAATATCTCCATTCCTGGCTGTGACAAAAATGTAAGAAATTTTCACTC CTTTTTTACCTTATCTCTTTTGAGCATGTTTTGCAACTCAGTTCAGTTCAGTTCAGTGATGTGGTGTCTCTTCGTATTTT TGCAGATGCCAGGTACAATCATTGCAATGGGGCGGCTCAACAGACCCAGTATTATGATTTATGGTGGGACTATTAAGGTA AATGCCATTCTAGATTGGAAGTAGTTCAAGTATGTTTTCTGAAATCATATGACTAAAGGGGTGCTGAACTTTGTCATTTT GTTGTTCAAAACTCTAACACTCCCACTTCCTTAGAAGGGGGGGGGGAAACAATTCCTCAGTCGATGAAAGTATCACTGTG CAGGCCTATTTTTTGTTATTATAGTTATCTGATAAATTTGTAGTTGGGGTTGGATAGTCAGCAAATGTTTTATGGTGGGT GGTTTGTGTGTGTGTGCTTTCTGTGATTTAAGGGTCATACTCGTACTTGACATCATAGAATTTAAGATAATCATATGGTT TTTTTTGAAGGGGATCATACCACTTTGTCAATATTTACAAGGAATTTTATTGCAATTTGATGTAGGGTAGAGTAAAGCAA TTCCCTTGATTAAAATTAATGTGCTTCAGGGGAAATTTGGATAGTAGGGAAGTCGGATTACAACCACTATTTTAAATTTA CAATGTCTTGGAGCTTTTTTAACTGCAAGCTGCACATGCAATCCATGTAACACTTATGCAGTTAATATCAAGTATGGGTT GTTTATTTTCTTATAAACTGATGAAAATTTCTTTTTCCCTCTGAATTGTGGTTCGATTCAGGTGCATTTGTTAATTTTGT TTCTCTGTTTTTTTTTTCAGCCTGGTCATCATCAGGGTAATACATATGACATAGTGTCTGCCTTTCAGGTATGAGAAGCC ATTATTGTTTGAATCTCTTCCCATCTCATATTGTGGTTGAATTACTTTTCTTTCTTTTATTTCATACTCATTCAAACAGA ACTCAATTTTGTTAAATAAAAGATTTTATTTCTTCAAGAGTAGGAGAAGAAATATGACAGAGAAGTGCATCAAACCTTCT TTGAACAATGAGAAAATGAAAGTGAATAAAAAAAACTGAAAAGAGCTCTCCTAGCCCTTTTCTCTTATGAAAATATTCTC TTTTTTTGGGAGACATTGTAAGGGTAACTTTTATATTGCCACTGAGGAAGAATTGAATCATTTTGGTTTTTGTATACTCT TTTGAGTAATTGAGTTCTCTTTTTAAACAAATAAATATGTTATTGCTCATGTTGGAAATACTAAAGTTCATAATATAAAT TTGTTTTCCCTAAATTTCAAAACTTGAATGTGTTTGGTTTTCATGTAGTGCTATGGAGAATATGTGAGTGGATCCATTAG TGATGCCCAGAGACAAAGTGTTATCCGTAACTCTTGCCCTGGTGCTGGGGCTTGTGGTGGAATGTATACAGCTAATACCA TGGCATCTGCAATAGAAGCTATGGGAATGTCAATTCCCTATAGGTAAGTATATGTGTAGATTCTTATGTGTCTTATTTTA AACGTGCTTATCTTTATTTGCTGTTAATGTAGCTCATCTACCCCTGCTGAGGATCCTCTAAAGTTGGATGAGTGTCGTTT AGCTGGGAAATATATTCTGGAGCTATTGAAGATGGACTTGAAGCCCCGAGACATAATCACTCGTAAATCACTACGCAATG CAATGGTTATTGTTATGGCACTTGGTGGATCTACAAATGCTGTTTTGCATTTAATTGCTATTGCCAAGTGAGTGAAGCTT TGTGCCAGAGATCCTATTGATATCCATTAATCCTCAGAGAAACCTCATGTAATGATTTTCGCAGGTCTGTTGGCATTGAT TTGACTCTTGATGATTTTCAAAAGGTTAGCGATGAAGTTCCTTTTCTTGCAGATCTTAAACCCAGTGGGAAATATGTTAT GGAAGATGTTCACAAGGTATGCATTTAATGTTTTTTGTTAACTAATTGAAGGTTGCGTCTATTATTATTTTTTACTAGTT ATGCTTATGGTTCTTATGCTATTTAATATTTATTAATCCTGCTTGAAATTCCTTTTCAATTCTCTTTTTGATAGATCGGA GGCACCCCTGCAGTTATGCGATACCTTCTTGAGCAAGGATTTTTAGATGGTGACTGTATGACTGGTATGTCCACTTACCT TTTTGTGCTAAGAACAGAGTATTCTTTTCCGAAAAAATATCCATGTCTAACATACATATGTCTCCTCTCTAGTCACTGGA AAGACCCTAGCTGAAAATACAGAACTTGTCCCTCCTTTGGCAAAAGGGCAGGTATGAGCATGATATTTTTCATGTTAAAC TTTATCATATCCGAACTGTTCCTGATTACTGTTAATAATTTGATCTTTTATAAAGTACCAATTTCCTGTATGTGATTCAG GAAATAATAAGGCCAATAGACAATCCCATTAAGAAGACAGCACATATCCAAATATTATATGGGAACCTTGCACCACAGGG ATCTGTTGCCAAAATTACTGGAAAAGAGGGACTGTACTTCTCTGGTGAACTTTCTTGCTCTGTTTTCTTGGTGTTATAAA ATAATTGGTTTGCCCAAATTACATTTCTCTTTGCTACAATTTATTAATAATGGCATATTTCAACAGGTCCTGCACTTGTT TTTGAAGGGGAGGAGGCAATGATTTCTGCCATTTCAGAGGACCCTTCAAGTTTTAAGGTATCTATTTTACCTAGAAATAA ATGCATAGGGATAGTGCTGATCCTAGGGTTGTGTAGAGACTCACCATACTGTTACTTGAATGAAGTCTCAGTAATTGAGA TTTTGAATAGGTTTAGTTCATATGTGTTAATCAACCTATATTAACATCAAATTATGAGATCCATGTTGATCACAGTCTTG AATCTCTTGATGACATTGGGTGGAAGCACAAACAAAATGAAAATGGGGGCTGGGTATTGTTATAGCAAAATGACATAGAA ACCACTAAGCAGAGCAGAAGGGAAATTCCTTTAGATAAAATCTGTGAGTTTCATTGTGTACTGTTCTACCCATAGAAAAT CCTTTGACTGGCAAGCAAACAATCTTCTAGGACGTGTATTCTTTAATTCTATTATAATTATTTTAAGTACCTAAAATAAA TTGATAAAGTCCCTAAAAATAATACCTAGAAAGGCTACCATTAAATTATCAATTGAGAATATCAGTATACTTAAGCAACA TAATTGTGCCTAAAACAACATGGCTTAGTCCTGCATATTAAACCATTAGATGTTAATGTTTCCTTATTAAACTTCAGAGT TTCGCTTTTTAAAATGAAATATGATTTTAGTAATTGAAATTACGGAATGATTCTGTTAAAATGCAATTTAGTTGAGCAGT AACCACGACCATCAATTTATGACATATATTTTATGGTGTAGTTGTGAATCCTTTAGCAACTATACACTTGTCTCAAAAGC GGGATGCAACTTTTTTCCAAAGGAAGAATTCTTGCTTTTGGCAGAATATATGTTGGAATTGCTTCTCAATTTTAAAGTAA AACATACACTTAGTTGCTAGAGTCTCAGTGGTTTGCTTCTGTTTTGATTATTACACTTGTTGCACAAATTTTTTATTTGG AGCTATAGATCATAGTTCAAATTGCTGCTATTTTTAAGATCTTTTCTGATTCCTCCGTATGACATTTAACTTTAGGGGAA AGTGGTTGTAATAAGGGGAGAGGGACCTAAGGGTGGTCCGGGCATGCCTGAGATGTTAACACCAACAAGTGCAATAATGG GTGCAGGCCTCGGAAAGGTATATCTTGCATCTCCTTATTTATTCTATTAATTAAGTTTGTAATGGTGGTATGCGCATTGT GATTTACAACTATGAACTGACCTGAAGGGCTTTTAATTTTATCTTATTTTTATACTTTTTGTTTAGCCAAATGTATGTAT AAACTCTAAAGTCGCTTGATTATTAGTTTTTTAAATAGAAACTATAATGCATCTTTCATGATTTATGAACTTACTCTGAA CTGGTATTTTTTTTTGATATTTTTTTGACGCTTCAGGATGTTGCACTATTGACTGATGGAAGATTTTCTGGAGGTTCACA TGGGTTTGTGGTTGGTCATATATGCCCTGAAGCACAGGTGAATTGACAATGCGGTAGCGTTTTGGTTTATTGAAAAAATG AAATAATGACTGTTATGTGATGATTAACCATTATGACTTGACATGCTTTTATTTTCCATTTCTACTGTGACATGTTCAAT TGTTCATATTTTAATCCATATGAAGATAAAGAACCTTAATTATAGTTTGTTGTAGCGAACCAGTAATATTTACACTTGCT TCATTGATTTGATAGGAAGGTGGTCCAATTGGTTTAATTCAAAATGGAGATGTTATCAACGTTGATATCAAGAATAGGAG AATTGATGTTTTGGTACCAGATGAGGAGATGGAAGCACGCAGGAAGAAATGGACCGCTCCTCCATACAAAGCAAACCAAG GAGCTCTCTACAAGGTATGAGAACTGGAACACCTTATGGACAAAAAATATGAAATATATTTATAAAGATCTGATTACCTT TTATTCCTTTATCTTATAATGAATACTATTTTGGCGAGTTTAGTCCCTCTAATTATAATTGTTACTGTTAGAATTTAG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0297500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAGTCCACTCTCTTCTCCCCCACCATTTCCCCTCTCCTCCCCACCTTATCCCACTCCCATCCTCGCCGTACAGTGCG AGCCTCCGTCGCCGCCGTCGAAACCCAGACCAAGCTCAACAAGTACAGCTCCCGCATCACCGAGCCCAAGTCTCAGGGCG CCTCTCAGGCCGTCCTATACGGCGTGGGCCTCTCCGAAGATGACATGACCAAACCCCAAGTCGGCGTTTCCTCCGTCTGG TACGAGGGAAACACCTGCAACATGCACCTCCTCGACCTCTCTGAAGCCGTCAGGGAAGGTGTTGCTCAGGCCGGGATGAT CCCCTTCAGGTTCAACACCATTGGGGTGAGTGATGCTATCTCCATGGGTACCAGAGGTATGTGCTATAGCTTGCAGTCAA GGGACCTCATTGCTGATAGCATTGAGACTGTCATGGCTGCTCAGTGGTATGATGCCAATATCTCCATTCCTGGCTGTGAC AAAAATATGCCAGGTACAATCATTGCAATGGGGCGGCTCAACAGACCCAGTATTATGATTTATGGTGGGACTATTAAGCC TGGTCATCATCAGGGTAATACATATGACATAGTGTCTGCCTTTCAGTGCTATGGAGAATATGTGAGTGGATCCATTAGTG ATGCCCAGAGACAAAGTGTTATCCGTAACTCTTGCCCTGGTGCTGGGGCTTGTGGTGGAATGTATACAGCTAATACCATG GCATCTGCAATAGAAGCTATGGGAATGTCAATTCCCTATAGCTCATCTACCCCTGCTGAGGATCCTCTAAAGTTGGATGA GTGTCGTTTAGCTGGGAAATATATTCTGGAGCTATTGAAGATGGACTTGAAGCCCCGAGACATAATCACTCGTAAATCAC TACGCAATGCAATGGTTATTGTTATGGCACTTGGTGGATCTACAAATGCTGTTTTGCATTTAATTGCTATTGCCAAGTCT GTTGGCATTGATTTGACTCTTGATGATTTTCAAAAGGTTAGCGATGAAGTTCCTTTTCTTGCAGATCTTAAACCCAGTGG GAAATATGTTATGGAAGATGTTCACAAGATCGGAGGCACCCCTGCAGTTATGCGATACCTTCTTGAGCAAGGATTTTTAG ATGGTGACTGTATGACTGTCACTGGAAAGACCCTAGCTGAAAATACAGAACTTGTCCCTCCTTTGGCAAAAGGGCAGGAA ATAATAAGGCCAATAGACAATCCCATTAAGAAGACAGCACATATCCAAATATTATATGGGAACCTTGCACCACAGGGATC TGTTGCCAAAATTACTGGAAAAGAGGGACTGTACTTCTCTGGTGAACTTTCTTGTCCTGCACTTGTTTTTGAAGGGGAGG AGGCAATGATTTCTGCCATTTCAGAGGACCCTTCAAGTTTTAAGGGGAAAGTGGTTGTAATAAGGGGAGAGGGACCTAAG GGTGGTCCGGGCATGCCTGAGATGTTAACACCAACAAGTGCAATAATGGGTGGTTCACATGGGTTTGTGGTTGGTCATAT ATGCCCTGAAGCACAGGAAGGTGGTCCAATTGGTTTAATTCAAAATGGAGATGTTATCAACGTTGATATCAAGAATAGGA GAATTGATGTTTTGGTACCAGATGAGGAGATGGAAGCACGCAGGAAGAAATGGACCGCTCCTCCATACAAAGCAAACCAA GGAGCTCTCTACAAGTATTTTGGCGAGTTTAGTCCCTCTAATTATAATTGTTACTGTTAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0297500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQSTLFSPTISPLLPTLSHSHPRRTVRASVAAVETQTKLNKYSSRITEPKSQGASQAVLYGVGLSEDDMTKPQVGVSSVW YEGNTCNMHLLDLSEAVREGVAQAGMIPFRFNTIGVSDAISMGTRGMCYSLQSRDLIADSIETVMAAQWYDANISIPGCD KNMPGTIIAMGRLNRPSIMIYGGTIKPGHHQGNTYDIVSAFQCYGEYVSGSISDAQRQSVIRNSCPGAGACGGMYTANTM ASAIEAMGMSIPYSSSTPAEDPLKLDECRLAGKYILELLKMDLKPRDIITRKSLRNAMVIVMALGGSTNAVLHLIAIAKS VGIDLTLDDFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVMRYLLEQGFLDGDCMTVTGKTLAENTELVPPLAKGQE IIRPIDNPIKKTAHIQILYGNLAPQGSVAKITGKEGLYFSGELSCPALVFEGEEAMISAISEDPSSFKGKVVVIRGEGPK GGPGMPEMLTPTSAIMGGSHGFVVGHICPEAQEGGPIGLIQNGDVINVDIKNRRIDVLVPDEEMEARRKKWTAPPYKANQ GALYKYFGEFSPSNYNCYC
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF143975
23 412 390 1.26E-139
IPR037237
PANTHER
PTHR21000:SF5
32 571 540 6.0E-278 –
PANTHER
PTHR21000
32 571 540 6.0E-278 –
TIGRFAM
TIGR00110
55 566 512 9.5E-197
IPR004404
Pfam
PF00920
71 567 497 2.3E-190
IPR000581
ProSitePatterns
PS00886
159 169 11 -
IPR020558
Gene3D
G3DSA:3.50.30.80
414 551 138 3.5E-34
IPR042096
SUPERFAMILY
SSF52016
415 573 159 1.41E-38 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004160
Molecular function Dihydroxy-acid dehydratase activity Catalysis of the reaction: 2,3-dihydroxy-3-methylbutanoate = 3-methyl-2-oxobutanoate + H2O.
Subterm of
GO:0009082
Biological process Branched-chain amino acid biosynthetic process The chemical reactions and pathways resulting in the formation of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0297500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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