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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0298700 |
| Transcript ID | LotjaGi6g1v0298700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TVP38/TMEM64 family membrane protein; TAIR: AT5G19070.1 SNARE associated Golgi protein family; Swiss-Prot: sp|Q55909|Y305_SYNY3 TVP38/TMEM64 family membrane protein slr0305; TrEMBL-Plants: tr|A0A1J7GS36|A0A1J7GS36_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0298700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61629471..61636214) extracted from Lotus japonicus Gifu genome v1.2.
GTTAAGTTAAGCCACATGTAGAAGGAAGAAGGAAGAAGTAGAACCAACGCTGAGTGAAATTACAAATCTACCCTTTTCTT CAATTCTCTGATAATAATCTCTCATCTCTCTGTCTCTCTCTGATCCAAAATCCAAAACTCTGTTACTTTTTCATGCAAAT TGCAATCAAACAAAGAACGAAAGAGAAGAATTTGACAAAGGAAACTACGCGTTTGATTGATTTGATGGCATAAGACCAAA ATAGCACGGTTGCATTTGATTTGATTGATTTATTTGTGTTGGGTTTGAAGCAAATCTGGCAACTCTTGGGGGATTGAGAG CTCGCTCTTCGTTGAAGCAACCTTCTCCTGATTTCAACGACGACGACGAGGAGTGTCGGCCTTGGCGTCGCCGATTAACC ATGGCTTTCTCCTGGGCCTCCGCCCTCAGGATCACCCTTTTCGTTCTCCTTCTCGCCGCTGTTGTCATCGCTTGTTTCAC TCTCCCTGTCGAAAAGGTTCCCTTTTTCGAATACCCTTTTGGCTCTTATCTTCAATTTCGCTTCTGGGTCTCTCCCCTTT TCATCTGATATTGTTCCTTCGATTTTGTGAGTTTTCTAATCTGTTCATGTTTTTGCTCTGCAGATGATGAAGGATTTCTT GTTATGGGTTGATCATGATCTTGGGCCATGGGGTCCACTTGTTCTGTAAGTTATATTTCATTTTTTTCCTTAAAAGAAGC CAATTTATTGGATTTTTTTGTACTGTCATGATTGTGAAACATGTTTCAATTTGTGTAGTTCTTTAATTGCTATTGATTGT CTCATTTGTGACTGGGAAATTTCTTGGTGCCAAGTAGCTTACTAGCTTAGTTAAAATATTGGTGCTGGAGCTCTGATACT TTGTCCTTGCTGATATAAACATTACTATGGGTCTAACATCATTTAGAAATTTTGGTTGTGTTGAAAAATCTTTGCATTTG AAATGGCGAAGCAGAAAAATTATTTTTTTGTTAAATGTTTTGTCTTACTTATTTTGAAAGTGTAAATCTTTGATGTGTTC GGGAGCTATTCTTTACTCCCAAGCCTATGTTGACAGCTTTTTTTATTATAAAATAAGTTAGCAGGAGTCGTAAGTCGTAA CCCTTAGGACTACTAATGAAGGTCTGACATATTGCTGTATGCTTGATGTATTGTTATTGGCTTGTATGAATGGTGCGAAC TCCCATGATTGTAAGACCCTGTGTTATAGATTTTGATACTTGATAGTATTAAATCAAATTCAGAATGTTCTTACAGTTCC CCCCTTGAAAACACAGTGAAGGTAGCAGGGGTGCAACATATTGATCTTAATTGCGGTGCTGTGGAAATTTGTAATTACGC ATATACAAGTTGGCATGTTTCATGAATTTATTTGTTTGGTGATTTTCAGGGCTGTTGCTTACATTCCTTTGACTGTCTTG GCAGTTCCAGCTTCAGTACTTACTGTAAGATCCATTCTTACCCTGACATTTTTTGCACAACTTATTTAATTTCTTGTGAA ATGGTATTCTCAAATACTAGCAATGTACTTGTCTGTAATATTTTGGTCAAAATTTTGGTACGTATATGTGCAATATCCCA AATGCAATGAAAAATTACCATCCCTAATGTTACCTGTATTAATCGTGGAAGGGTTAACATTTTCTTCTAACTCTAATGGT AGAAATTGGAAACGTAATGTGTCTATTTAGTTCAAAAGGCTGAATGATGCCAACATGGGTTGGCACAACTGGCTTCAGGT TCCGGGTTTAGCTCTCACCTCTCAAAGGTCGAGGGTTCGAATCCCCCTGGGGTCAGTAAAATCCCAGTTGGTGGGCAACC CTCCTCGGGGAGATCCCCCGGCGCTCCTTCTAGGAGTGGGCCTCTGCTGGCCTCCCCAGCATGCCACTGGCGCCCTGCCC GGTAGTCTGGAGGTGCTTTCTCTCCGTTCTACCATTTTTTGTAACAAAAAAAAAAAGGCTGAATGATAGGTTACTCGGGA TAAAGGAGGCCATCAATGATGTGAAAAAAAGTAGTGAGAGAGATAATTTTCATATTGCAAGGACTTGCATTTGTTATTTG CTTAGGCTTCATGGTATGACTTTTGGCATGCCATAGTGATTTTCTCCCCTGTTCCACTTGATGCTTTGATTTTCCATCTC AATTACATTACGTGGCGCATTAGAAGAAAACTTGAACCAGCAAAATCACATAAATTTGCTGAGTCACTTTACTTGTTACT CCTCCTTCAGCTTGGCGGTGGTTATCTTTTTGGGCTTCCAGTGGGCTTTGTTGCTGACTCTATTGGTGCAACTTTAGGGG CAGGAGCTGCATTTATTCTTGGTAGAACGGTAAGTTCTTCAAATTTTACATTTCTAAGTAGTTGTCAGAATAGTTCCATT TTTTTTGTCAACGACTTGATACTGCGTAGTTATTTGATGGATTAGTACACGGTTCTCTTTCTTCACTATGTGATTTTTGC AATCTCCTTTCCATTTTAGTTGGGCTTCATTATGACCCATGTATTTCCATATCATGATATTGTTGTTTGTATCCTATGAT GTTACTTAATCTTATCTTTGTCCTTTTGTATAGATTGGAAGATCATTCGTTGTTTCTAAGTTGAAGGACTATCCACAATT TAGATCTGTGGCAATTGCGATTCGCCGATCTGGCTTTAAGGTTTGTATACATTTTTTAACATTGTCATGAAATTCTTTAG TCTTTTGGTATTTACTTTCTAAGATTCCTCTTGATTTTACCTTTTTCTGGGATTCTTTCTAAAATCTAAACTTGAGAACT CTTGGTGAAGTGAGGGGGTCATGAAATTATGTACTTCAACATTTCTGTGGTTTTGGTGTACCAAAGTAGTATTGCTGTGT TAAGGAAGTAAAGGAACAAGAGACATGTGAAAGAATCCATGTGTTTCAATTTCAACACGTACTGAGGCACAATAAATACA AATGTTATTGTTATCTTAGTTACTATAATTACATGATACTTTACAACCATGATTTTCATTGGGTTACAATTATAAAAAAC ACTTAAATGATAATTATATTTTCTGTTTTTTTTCACAAGCTACTCAAAATAATCAGATATACAATTATTTTGTATTCTGA TTTTTTCAAAAGCTGAAGCAAACACTTAAAAAAAATTAAAGTGATTTTTCTTCTTCAAAATAACAGTATTTTTTTTCTTT CATTAAAAAGCTGTAGCAAAGGGGCTATGAATGTAATATATGCTTAAGTGCTTATATATAAGCCTAAATAAACTCCGCAA AAGCTCTTCTAAATGCGCCCTTAAGGAGAAATTAGATTTTTCCACTAATTGTTTATAAAACTACCCATCCCTGTAACTGT ACCAATGGCATATGTCGTTCATTTTCCTGTTATTGCTTAAGGTCTATTACTGTGCTATCTGTTTGCTTCATATTCTTGTT ATTGACTGGGTATAATAGTATTCATTTTGGTTATTTCTTTCTTTGTTCTTACAGATTGTATTACTGCTGCGGCTTGTTCC ACTACTTCCATTTAATATGTTAAATTATCTTCTGTCGGTGACTCCTGTTTCAATTGGGGAATACATGCTGGCTTCGTGGT TAGGAATGATGGTATCTTTTTCGTCCTTGATCAATATATTTAGGAATTAGTCTAATTATAAATTTATATTGTGCTTTATG ATTTTCAAAATTGTTCAGAGTTAGTTGGATTTTTTCTAGCCGTCACTCACTCACTTGCTTTTTAATAAAAAAAATTCTGA AATGTTTCAATCAAAAGATGCATATGCTTAATGGTGATCTTGAAACCTTTAAAAGCTATCGGAGTTGTTCCTTTTTATTT GTACCTAAATAAAAATGAAAATAGCCGTTCTTATTGTGCTTGGAGTCTATTCTAAGGGTGGGGTCAATAAATGCATTCCA TCTTTTGTCAATCCTATAAAAGATATGCTTTCTGTTTACGCTTTAGGCAGATAGTACATTTAATTAGGTCTTAAAACCAA GTTCATTTAATGTTCATATACTTCTATATGATTGTCTGCATCAGTCCGGGCTTTGGTGTTTGGTATGAGGAGGCATTTTG ACGTGCTAAATAAATCTATGAACAAGTAGAAATATCACCATAAGATTCCTAGTGCTCATGCTGTCAACATTCTTGTTATA CATATTTGTTGTTGTTAGTAACTCAGTATTGCATCCATTCCCCCTTTGGATTGACGGTAGAAATCAGGTGGTTTGCCCTC TAAACCACCATGCACATGTTCTTATTGCTCAGTAGATGGGACTCCAATTACAGCAATATGCTAATGCCTGATATTGTTTC TGTTGCAGCCAATAACTCTGGCACTTGTATATGTTGGAACTACTCTTAAAGATCTTTCTGATGTGACACATGGTTGGAGT GAGTTCTCAAAGACTCGCTGGGTAAGACATGCCATTCTGTAATCTTTATATTAATGAGTCTTTTAAGTAATTGGTAGATT TGTCTCAAGTAATGGGTAACACTGTCACCTGTATCGGATAGTTGTGCTTATATCATTCTCACATCATCTTCAACTGATAT ATCTTATACATTTCTTTTTCTTGTGGATGCAGGCGTTTATCGTTTTTGGCCTCGTAGTATCGGGTAAGTTACTTTGTTTC CACACTTTATATGTGTCTCCAAAACTTCATTGCATAATATGTTCGCAGTTAGCTGGTTTATCAGGAGTTGTAGTTTGCTT TTCTTACTTACTATATAGATTATGAAGCTCTTGGATAAATATATAGTATGGAAAGTTACTAATTGCATTTTTGCATGTGT GGTGACTCAATTTTGCCCTGCAATTCCTGTTCCAATGTGACTTCTACATTGCTCATACGATACATGAATGCAGCTCATTT GTGCAGCATTTAAATCAGAACCGGGCTTTAAAATCTCCTCATGGTTTAGGGCAAAAAGAACTCTACAAGATTCTGGTTGG AAGCCCCTGTTCTTCTTGAAGACATTTCTGTTAGCCTGTGACTTCATATGAAGTTACTCTGTCTCTCTCTTTTCGTCCTG TCTCACCCTTTTTGATTTGCTTGTATTTTCTTTGAATGGGAAGGCTGGCCAGCCAACTTTGTCTGCTGCCAGCCCAGTGG CTGCAACTTGTGCTGAATGCTAGGGCCCGGTAGCTGATGGTCTCTTGAGACTCACACATGCTCTGTTTCCAGGGGCTTTG TTCTACAGCCACATTTTTCTATCTTTCTTTTTTTGTGGCAAAAAGAAAAGATGACTTAAAATTTAGTACGCAAATGAGGG AAAGAATAAAATCATCTTCCTCACCATAGTCATAGTCATTATTTTTATACTTAACTGTCTTAGATTTAAATGATTTTTAT GATTGTGGTGAGTTCTGTCATGAGTCAAGTTTTGAACATAGATTAATCTTTTTAACTTGCATTTTTTTATTAATATGTTT AACATGATGTGTTTCGCAAGGCATAACAAATAACAGAGTATTAAATTGTAGGATCTATATTCTTTAGTTAATTGTCTTGT AGATGATAATGATAGGTAAATTCTTGAGTTTGGAATGGAAAGGGAGTTCATTTGCTAGGATATGATTGGACATTGCAAGT ATTTCCATGCTGCAAGAATTATCTTGAATGTGAACAAGTTTCCAATTTTCTTAATCTGATTAGCTAGGCTAAGCTCTGTT ATTTCTGGTTTATGCAGTGGTTCTTATGGTATGTGTGACTAAAGTTGCCAAATCTGCTTTGGATAAAGCCTTGGCCGAAA ATGAAGATATTGATGGGTTAACTTCCTCGCCGGAGTTACCGATTGTGGCTGAAACATCTTCGGATCTCAGCCATCCTCTC ATAATCAAGATAGATCCCACTGACGAAAATCATGAAAAATAAATTTCTTTTTTGTGTAAATTCTTCCTTCTTGCTCTCAA AATCCCAAAAGCTATGCTTTTTCATTTAACCTGGTCTTATTTATTTATAATTTGTACAGTTCCAACATTAGAAATTTAGT TTGTCACAGAAGTGGTTAATCCTACAGCGGTATGACATTATTGGAGACTGTATCTTTTTGCCAACAGAGAGAAAGTTCAT GCTATGAACTTGTGAATCTCATTATTTTTTTGTTATAACCCATGATGTTGACTTTATAGTGCTTTGGACATTTTCTGCAC TAAAGTTAAGCACTAGTAGTGTGATGAAAGATAGTTTGAATCAAATTATGAATCAAATTGCTTCTTTAGGGATGTGACGA TCTTTTTTTGTACACTTTGAAAAATTGAGACTATCCTTTAACCTTTTGTAAGGTATTTATATTTGGCTTAATAGGTCTTT TGGTCCCTCACTTATCACAATTTTGCACTTTTGGTCCCCAATAAAAAAGTTAGCACTTTTGGTCCTCCACATTGCTTAAT TTTTTGTAAAAATAATCCCTATTTGGGACTAAAATGGTAAAAGTGTGTAAATGTGAGAGATTAATTTTGCTAATTTTTTC TAGAGGGACTAAAAATGCAAATTTGTGATAAGTGAGGGACCAAAAGAGCTATTAAGCCTTTATATTTTTGTATCATAATC ATACTATAATAGTTCACTAAACACTGAAAGTGACTTCTCCATGTGCTTAAAACTAAGTGGAATACCTGGGGTGCTGTTCA TTCACATGCTGTTCCTTATGTTGTCACCAACTGTACATTCCTTGAAATAATTGCGTTTTGAAATTTAGCAGGTTTTTAAA TTTGGGAAAGTTTTGATTCTGGAA
CDS sequence (LotjaGi6g1v0298700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTCTCCTGGGCCTCCGCCCTCAGGATCACCCTTTTCGTTCTCCTTCTCGCCGCTGTTGTCATCGCTTGTTTCAC TCTCCCTGTCGAAAAGATGATGAAGGATTTCTTGTTATGGGTTGATCATGATCTTGGGCCATGGGGTCCACTTGTTCTGG CTGTTGCTTACATTCCTTTGACTGTCTTGGCAGTTCCAGCTTCAGTACTTACTCTTGGCGGTGGTTATCTTTTTGGGCTT CCAGTGGGCTTTGTTGCTGACTCTATTGGTGCAACTTTAGGGGCAGGAGCTGCATTTATTCTTGGTAGAACGATTGGAAG ATCATTCGTTGTTTCTAAGTTGAAGGACTATCCACAATTTAGATCTGTGGCAATTGCGATTCGCCGATCTGGCTTTAAGA TTGTATTACTGCTGCGGCTTGTTCCACTACTTCCATTTAATATGTTAAATTATCTTCTGTCGGTGACTCCTGTTTCAATT GGGGAATACATGCTGGCTTCGTGGTTAGGAATGATGCCAATAACTCTGGCACTTGTATATGTTGGAACTACTCTTAAAGA TCTTTCTGATGTGACACATGGTTGGAGTGAGTTCTCAAAGACTCGCTGGGCGTTTATCGTTTTTGGCCTCGTAGTATCGG TGGTTCTTATGGTATGTGTGACTAAAGTTGCCAAATCTGCTTTGGATAAAGCCTTGGCCGAAAATGAAGATATTGATGGG TTAACTTCCTCGCCGGAGTTACCGATTGTGGCTGAAACATCTTCGGATCTCAGCCATCCTCTCATAATCAAGATAGATCC CACTGACGAAAATCATGAAAAATAA
Protein sequence (LotjaGi6g1v0298700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFSWASALRITLFVLLLAAVVIACFTLPVEKMMKDFLLWVDHDLGPWGPLVLAVAYIPLTVLAVPASVLTLGGGYLFGL PVGFVADSIGATLGAGAAFILGRTIGRSFVVSKLKDYPQFRSVAIAIRRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVSI GEYMLASWLGMMPITLALVYVGTTLKDLSDVTHGWSEFSKTRWAFIVFGLVVSVVLMVCVTKVAKSALDKALAENEDIDG LTSSPELPIVAETSSDLSHPLIIKIDPTDENHEK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| PANTHER | 6 | 268 | 263 | 2.3E-122 | – | |
| PANTHER | 6 | 268 | 263 | 2.3E-122 | ||
| Phobius | 12 | 23 | 12 | - | – | |
| TMHMM | 13 | 30 | 18 | - | – | |
| Phobius | 24 | 27 | 4 | - | – | |
| Phobius | 28 | 50 | 23 | - | – | |
| TMHMM | 50 | 72 | 23 | - | – | |
| Phobius | 51 | 78 | 28 | - | – | |
| Pfam | 65 | 183 | 119 | 6.6E-24 | ||
| Phobius | 79 | 89 | 11 | - | – | |
| TMHMM | 79 | 101 | 23 | - | – | |
| Phobius | 90 | 110 | 21 | - | – | |
| Phobius | 111 | 129 | 19 | - | – | |
| Phobius | 130 | 153 | 24 | - | – | |
| TMHMM | 135 | 154 | 20 | - | – | |
| Phobius | 154 | 164 | 11 | - | – | |
| TMHMM | 161 | 183 | 23 | - | – | |
| Phobius | 165 | 183 | 19 | - | – | |
| Phobius | 184 | 202 | 19 | - | – | |
| TMHMM | 203 | 220 | 18 | - | – | |
| Phobius | 203 | 224 | 22 | - | – | |
| Phobius | 225 | 274 | 50 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi6g1v0298700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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