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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0299300 |
| Transcript ID | LotjaGi6g1v0299300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine incorporator; TAIR: AT3G06170.1 Serinc-domain containing serine and sphingolipid biosynthesis protein; Swiss-Prot: sp|A7S4N4|SERIC_NEMVE Probable serine incorporator; TrEMBL-Plants: tr|I3T4C3|I3T4C3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0299300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61718202..61723124) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCGTGTTGTTTATCTTGCTGCGCATCTCTAACCTGTGGTCTCTGCTCCTCCGTGGCATCTGGTATCTCCCAAAAATC TGCCAGGATCGGTTACTGTTTTCTCTTCGGCGCTTCCCTCGTCGTTTCTTGGATTTTCAGAGAAATTGGAGCACCCCTTT TGGAGAAAATACCATGTAACTTATATTCATTCACTAAAGATTTCAGCTTTCATTCTAATTTTTCATTAACCTTCATGAAT CATGATCGATCAAATATGATAATTAGGGTTCTGGTTTTTCAGAAATGAACTACATTTAGCTGAGCTTCATTTTTCACTTG TCTAGATTTATAATTCAAGTAATTAGAGAAAAAAGATTGGAATTTTGGTTAAATGGAAACACTTAGAAAGAAATGGATTA TTTAGTATTTTCACTAATTTGATTGAGTTTTGGACAAACTTTTTTTTTATTACTATAAGCTGTTTTGAACCCTCTTAAAG AAGGTAATCCAAACACACACTGCTTAATCTTTCTGTTTGAATGCAAAATATTGATGTATTAGTTTCAGGATACTTTCATG TTCTGGTGCTGGGCTTACCTAAAAAAAAAAAATGTTCTGGTGCTGGAACTTGTGTCAGTAAAGCTCATTGAATTAATATT TTTATTGTAAATGGTTTTTTTCTGTGCTGGGATTTGAACATTTCCCTCTTATATGTGGTATATAAATTCAAACTTACAGG GATAGATTCATCTGATACTCACACAAAGGAATGGTATCAAGTGCAAGCAGTTCTTCGTGTGAGTTTGGGGAATTTCTTGT TCTTTGGCATTTTAGCTCTTATAATGATTGGTGTGAAGGACCAGAATGATAGGCGTGATTCATGGCACCATGGTGGATGG ACTGTAAAACTGGTGATCTGGCTTTTGCTGCTTGTCCTCTCGTTCTTTCTTCCTGATGTCATAATACTAGTATATGGTAT GTTTTGTAATCCTTAATTTGTTGCTTTTGATTCTTTGTGGCATTGATGGTTGGCATGTGCGTATTTATAAATGTTTTGCA GGATTCATATCAAAATTTGGGGCTGGATTGTTTTTATTGGTTCAGGTGATAATTTTACTTGACTGCACGCACGCTTGGAA TGATGCATGGGTTGAGAAAGATGAACAGAAATGGTATGTTGAATTTTCTTTTATACTCCTATAATTTTTTTTTTTCCTGT GGTTCTCTATTTGCCATTGTGATCCTAAATTTTTTGCATGTTTAGGTATGTTGCTTTACTTGCTGTATCTGTCGGATGCT ACATTGGAGCATATGCATTGTCGGGAATTCTTTTTATTTGGTTCAACCCTGCTGGATATGATTGTAGCATCAATGTCTTC TTCCTCGTCATGACTATGATTCTTGGTTTTCTACTTGCAATTATTGCTTTACATCCTCGGGTAATGAATAGAAATGTTTT TAAGCAATTGAAGCTATTGCCTTTTGTGCTTTTGTACGATATGAATTGCATGATGATGTGAGAACTGAGAACATCTGAAG TTTATGGAGTTTCTAATAACTGTTGAGTTGAGATGCCTCACACTAACTAGAGATATGGCCAAAGTAATTCTTATAAAGGG TAGAGCAACCCTCACCCCTAAGCTAGCTTTTGGGGTAGAGATAGACCTAACCCAAATTCTAAAAATAACATATTCTTTTT GTATGTTTAATAAGGTTAGGCAAGATGTAATGTAACCACTTTCACTGTCTCATTTATTTTATTTATTATTGAAAAATTGA ATAATAATTGTAATGCAAAAACAGGTGAATGGAAGCTTGTTGCCTGCAGCTGTGATTTCCCTTTACTGTGCTTACTTGTG TTACACTGGTCTTTCTAGTGAGCCTCGAAACTATGAGTGCAATGGTCTAAACAAGTCTAAAGCAGTCACCACAAGTACGC TTGTTCTTGGCATGGTAACAACGGTGCTATCGGTGTTGTATTCTGCTCTTCGTGCAGGGTCTTCGACCACATTCTTATCA CCACCTTCTTCACCGAGATCAGGTAATAAAAGAATGAATCTTTATGATTTGTGATCTTAGGATATGTGTATTGGTATTTT AGATTAATTTCTTCTACTCCTCTTTTAGACACCGTACTGGACTGGAAAAGCTGGGAATCAGTCCTTCGCTGGTCCAATCT GTCAAGAATAATTGGCTTGATGCCTTCTCTGATTCTATTCTCTTCTATATATAATACAATTACATTTACAAGCAATAATG ACTAATTAACCCTAATTCCTAATTTGCACAACCTAAATTAGGAAGTCTAATTCTGTACATTCAAATAGGAATATTCTTGA TTCTATTTCCTAATTTCTCAAACATAAAATAGGAAACAATCATTAATTGCAGATATCCTCATTGACATCCCCCCTCAAAT TGATGCGGTTTGTCAAGAAGCATCAATTTGCTAAGAAGAAACTGGTGACGGGCACGAGGAACCGCTTTAGTGAAGATATC TGCAAGCTGAAGCTGCGAGGAGACATGAGGAAGAGAGATAACATGATCATCAAGAGCCTCACGAATGGAGTGACAATCCA CTTCAATATGCTTAGTGCGCTCATGAAAAACTGGATTAGTAGCAATCTGAATAGCGCTTGTGTTGTCAGCATGGAGAGGC GTAGCATTGATTTGAGGGAATCCGAGTTCAGCCAATAAACCACGAAGCCAAGTTATTTCAGAGCAAGCAGTGGACATAGC TCGATATTCAGACTCAGTGGATGACTTGGAAACGCGGGCTTGCTTTTTGCTCTTCCAAGAAATTAAGGCCGGACCAAGGA ACATGCACCAACCGGACACCGACCTTCGTGTATCAGCACAACCTGCCCAATCAGCATCACTATAGGCAAGCAAAGTAAGA GATGTACTGGCCGGAAAAAATAATCCTCGATAAGACGTTCCTTTCAAATAGCGAATGATGCGACGAACAGCAGCCAAGTG AAGATGACGAGGAGTGTGCATGAATTGACTAACTTGTTGTACGGCAAAGGAAATATCTGGACGTGTAATAGTCAAATAGT TAAGACTTCCCACCAATTGACGATACAATAAAGGATCAGGCAAAAGATCACCCTCATCACGATGATATTTGACATTAACT TCAAGAGGAGTATCCACAGGGACAGCAGATTGAAGACCAGCCAAAGAAACTAAGTCCTCAGTATACTTGTGCTGATTGAG AAAAATACCTTTGGAGTCAGAATGAACCTCAAGCCCCAAGAAATAGTGAAGATACCCAAGATCCTTCATGTGAAAGGAAG CTTGAAGCTGCTGTTTAAGTAGTTGTATGGACGCTTGATCAGAGCCAGTAATGATCATGTCATCAACATAAATGAGAAGA AGAACAATACCAGCGGACGTGTGATGAATGAATAAGGAGGAATCATATTGGCTCTGAGAAAAAGAGAATCCAAGAAGGGT AGACCGAAATTTCTCAAACCATGCCCGAGGAGCCTGCCGCAAGCCATATAAAGAACGCTTGAGTTTGCACACGCCTTCAG AGGAAGAAAACAAGCCTGGAGGAGGTTTCATAAAAATATCTTCTGCTAAATCACCATGAAGAAATGCATTCTTCACATCC ATTTGATATAGGGACCAACCTTTAGAGGCAGCAATAGAAAGGATTGTGCGGACAGTGGTCATCTTTGCCACAGGTGCAAA GGTCTCATCATAATCCACCCCGTATTCTTGTTTGTTACCCAAAGCAACCAACCGGGCCTTATAACGATTGAGAGAACCAT CAGAATTTAACTTCACAGAGTACACCCATTTGCAACCAATAGGTTTAACACCAAGAGGGCAAGGGACTATGTCCCAAGTG AAATTCTCCTGAAGTGCTTGTAGCTCATCTTGCATGGCCTTTACCCAACGCATGTCCTTAACAGCCTGCGAATAACATGT GGGAATAGGTATACTAGATAAAGTAGCAGTAAGAGAAGTAGGCTCCCATCCATACCTATCAGGTGTTCGATGCAGGCGAG TGGATCGACGCAGGGTAACTGGTGCTGATTCAGGCGGAGGATCAGCATCGGGAGCCTACAAAAATCAGTTTTCTGAAAAC TATTGAAATAAAACCAGAAGATGGTTCATAGGGTTAAATTGGTCCTCTTTTGTTCTTAAAAGTTGAAAGTAAATAAATAG AATAATTTTTTTAGTTTTCCTACATTGATTATGCCTTTCCAATTTATAACTAAAACTCGGTCATTCTCCTTCTAATTAGT CCAACGTGTGATAAATTGGACCCTGTAATGCAATAGGAGCTGGGCTTTTTTATAATGATAAGCATCCCATTATTCAATTG GGATTAGTATAGGATGATAATTTTTACCTTTCTCCTTTTACTTATTCAATGTGGAATTAGTATAGATTAAAAATTAATTG TAGCATCAGTACAATAATTTTTGTTCATACTTGTGCATGTGATAAAAGGTGAAAAGTGGAACTAAGAACAGAAAACAGAT TAGCCAACCAAACAGGCTTTTGTGCTTCTCACTTGAAGCACCTGCCAGTGTTGTTTTACAAGAATGGATTCTCCAAATTT AGTCCTGCATATTTTAAATAGTTCACATCTCATATTAAGATATGAAAGTGTTTTGAATATGTTCATTCAACAGGGAGCAA ACCTCTTCTTGAAGAAGTAGAAGAAGGAAAGACAAAAAAGGAGGAGAAGGAAGCAAAGCCAGTTAGTTATTCCTATTCAT TTTTCCACCTGATATTTGCCCTGGCTAGCATGTATTCTGCTATGCTTCTTTCTGGATGGACCAGCACATCTGATAGCTCA GATCTGATAGATGTTGGTTGGACTTCAGTGTGGGTTCGGATCGGCACCGAGTGGGTCACTGCTGGATTGTATGCCTGGAC TCTTCTGGCTCCTGTGTTTCTTCCTGATCGTGAATTTGCCTAG
CDS sequence (LotjaGi6g1v0299300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCATGGGTTGAGAAAGATGAACAGAAATGGTATGTTGCTTTACTTGCTGTATCTGTCGGATGCTACATTGGAAAT TGTAATGCAAAAACAGGTGAATGGAAGCTTGTTGCCTGCAGCTGTGATTTCCCTTTACTGTGCTTACTTGTGTTACACTG GTCTTTCTAGTGAGCCTCGAAACTATGAGTGCAATGGTCTAAACAAGTCTAAAGCAGTCACCACAAGTACGCTTGTTCTT GGCATGGTAACAACGGTGCTATCGGTGTTGTATTCTGCTCTTCGTGCAGGGTCTTCGACCACATTCTTATCACCACCTTC TTCACCGAGATCAGGGAGCAAACCTCTTCTTGAAGAAGTAGAAGAAGGAAAGACAAAAAAGGAGGAGAAGGAAGCAAAGC CAGTTAGTTATTCCTATTCATTTTTCCACCTGATATTTGCCCTGGCTAGCATGTATTCTGCTATGCTTCTTTCTGGATGG ACCAGCACATCTGATAGCTCAGATCTGATAGATGTTGGTTGGACTTCAGTGTGGGTTCGGATCGGCACCGAGTGGGTCAC TGCTGGATTGTATGCCTGGACTCTTCTGGCTCCTGTGTTTCTTCCTGATCGTGAATTTGCCTAG
Protein sequence (LotjaGi6g1v0299300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMHGLRKMNRNGMLLYLLYLSDATLEIVMQKQVNGSLLPAAVISLYCAYLCYTGLSSEPRNYECNGLNKSKAVTTSTLVL GMVTTVLSVLYSALRAGSSTTFLSPPSSPRSGSKPLLEEVEEGKTKKEEKEAKPVSYSYSFFHLIFALASMYSAMLLSGW TSTSDSSDLIDVGWTSVWVRIGTEWVTAGLYAWTLLAPVFLPDREFA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 36 | 36 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| PANTHER | 18 | 206 | 189 | 7.1E-96 | ||
| PANTHER | 18 | 206 | 189 | 7.1E-96 | – | |
| Pfam | 22 | 205 | 184 | 9.9E-51 | ||
| TMHMM | 35 | 57 | 23 | - | – | |
| Phobius | 37 | 55 | 19 | - | – | |
| Phobius | 56 | 74 | 19 | - | – | |
| TMHMM | 72 | 94 | 23 | - | – | |
| Phobius | 75 | 94 | 20 | - | – | |
| Phobius | 95 | 135 | 41 | - | – | |
| MobiDBLite | 99 | 128 | 30 | - | – | |
| TMHMM | 135 | 157 | 23 | - | – | |
| Phobius | 136 | 157 | 22 | - | – | |
| Phobius | 158 | 176 | 19 | - | – | |
| Phobius | 177 | 201 | 25 | - | – | |
| TMHMM | 177 | 199 | 23 | - | – | |
| Phobius | 202 | 207 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi6g1v0299300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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