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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0299800 |
| Transcript ID | LotjaGi6g1v0299800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein interaction domain protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|I1MFB8|I1MFB8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0299800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61761840..61767539) extracted from Lotus japonicus Gifu genome v1.2.
TTTCAATTTATCATATTAATCCTATATTGAGGAAATAATGATGATAATAATAATAATAAGTAAAATTGACTACTTTAATT AGTTATTATTAATAATATTTTATAGCCCGAATGATAGCTCAAGTGGTAAAAGTTGGAGATATATGGGTTTGGGAAGGGAA GATCCATGGATCAATATCTGAATAGTGTAATTTATCTTTCCGATGTAACAAAAAAAAAATTAATCAATGAAAATTTTTAT ATATATCTAGTCTTGTAGGTAAATCAACACTTAAAAAAAAGTGAAAAACCCTCAATCAATGGTGTCATATAGTAGCAAGG ACTTGTCAGAGTGGTTGTCGTTCGACCTGGTGGAGCAAATCCTATGGAGGCTTCCGGTAAAGTCCCTCTTGCCATTCTGC ACCGTCTGCAAGTCATTGAATTCCACAATCTCCGATCCCAAATTCGCCATAAACCATCTTCTCTGCTCAAAGAAGAATCT CACTCACCACCGCATCTTACTTTCCCGACGTGACATGCCACCGAAGTCTCTCAGTGCTTACCCTCTCTATGAGGAACGCC GCTCATGCATTTTCAATGGTCACCCTAAAGGGACGCCGCTCAATTACCCCCGGAGCAATCCAGATTCTGATTTCATCGTT GGCTCTTGCGACGGAATCCTATGTTTCGCCGCCGTCGCCGGCGGTGAGGACAGACCGTTTCTCGTGTGGAACCCTTCCAT TAGAAAATTTAAGGAACTGGAGCCTTTGGAAACCAAACATCCTCATCAGAACCCTGTTCCAATTTATGGTTTTGGGTATG ATCATTCTTGTGATGATTACAAGGTGATTGCAGGGTTTTGTTATAAATTGCCTGGTGATGTTTTCAAATGCCAAATCAAT GGTAATGATTTGAGGACTAACGTTTGGAGAAGGAAAAATGTTCAGGATTTCCCTGGTTTGCCCATGCCAAATGATGAGAT AGGAAGATTAGTGAGTGACACTGTTAATTGGTTGGTGAAGTCTACTAGTTCATTTGTTATTGTTTCTTTTGATTTGGGGG AGGAGAGTTGTCAAGAAATTTCACAACCTAATTATGGAGTTGATTCTAGTGTTTTTGTTGATCATCCAGATATGTTTTGT TTGAAGTTGGAGGTACTGAGGGATTGCTTGAGCATTATTGTTCATGTTAGGGATTTCGAAGACAATGAGGACTATGAATA TTTATGGGTTATGAAAGAATATGGAAATCGAGAGTCTTGGACTAAACTGTTCAAAGTTCCTCACATGAAACTCAGCATAC GACCCTGGTATGGTTCGTTTGCCCGGATAGTCTGTATTTTAAAGGATTCCAAAGGAGATGATACATTGTTCATGCGTTGG GGGTCAACTTTAGCAGTTCATAGCTCAACTTTAACTGTTTTCAATTGCAACCATGATGGCGTTTGCGTGTTTGAAAGATT CAAACCTTCATTTTCCCTGGTATTTATGTGGAGAGTTTTATATTTAGGATGTAGATGCTATGCCAGGTGAGGTTTATTGA AGAGGCTCTTAATTGCACCTATTAGATTGTCTCTTCTAGTTTTTGCTGATTTCATGGATTTTGATTTCGTTTGTAGTTTG AGAGAAGCTGTGCAGCAATTTGTGTCGCATTTGTCTATTCTCCAATGAAATTTGTATACTGTGCAGCAGCTATCATGGAG GGTCCTCTTTCTCCTCCATGTGCTTAGTATTGAAGAGACTATGTATGCCTTGAAAGCAGTGGCGGATCCAGGACCCCGGG GTCAGGGGTTCAAAATCTGGTGGAACAAAAATCTGGTGTTATCAGAGCTTTTTCTTCCCTCAAAGATTAAATAGACAAGC CTATTAGTCCATCCTGCAAATTCATTATAGCCTCTTAGAGTTGCACAAGCACAAGGCATGATGAAGCTCATGAAATACTC GGTAATATAAAATACCAAAAAGCAAACTAGAACAAAAGGGTCAACCCAGGGAAGCTTTCAGCTTAATTTGATGCTGAGCA TATCATGATTTGTCAACATGAAAGTGTAGATAACATTTCAATACAAGAATTTATGAAAGTGCTCCCATTTACTAGGTATT GCATTCATAAATTTCACCAGATGATAATTCAAGTTTCCTTTGTTTAACTATACATCATTTACCAAAGAGCAGAGCCACAA ACTGTTTCATGGTTCAGCAGAGATTTTCATAACAAGAAAGACCAATTCACCCACTAATACAGTTTAAAAAACAAAATCAA AGAACCCCACATGAAAAACATCCCCAAAAGGGGTTTAATTTAATTACTAGGAATTGAAAAATTAGAATCTGATGATAAAT TGGTGAAATTTCCTCCTAATTCAATGGGGAGAAAACAAAACAGAAAAAGCATTGTTCAAATTCCAACCCCCAAAAAATCA GTATAGATTCACTCAGGTACCAGACAGTTGAAATTAACAGTGGTTGGAGATTCACACTACAGTTGAGCAAAGCAAGAACG TATAACTTATAAGCAACAACCTTAAAAATTACAAACCTTAAAAAAAGGAAAAACAAAGAACACTCGAGAATGAGAAAATA GAAAACAGAAACAAAGAAAAGCAAAGGAATGAGCAATTACCCGCTTTCAGCAGAGCAAAGAGTGTTGAGTTGACTGGTGA TGGGAAAGAGGGAGTTGGGTTCTGATCATCTGATGGATGAATTCATTTCCCTTCACATTCCAAATTTCCAATCTCAAACC AAGACAACAAGCTTATTTCCCAGTCTAATTTCACTTCAATTTCATATACACAAACTAAATTCAGCAAAAGGAAAAACAAG ACAACAAGCTTATAACTCAATTCCTACATCAGGACAACAAGCTTATGCTAAATAAACTAAACTCAATTCCCTTCATATAT GATATACACAATTCCTAACTAACTAAACTCAAACTCAATTCCTAACTTTCAGATTGCTTCAACAGCAGCACAATGATTTG ATAAAAAGTGTTGGAGTTTTTCAATTTGGGGTTTTCAATTTGGGGGTTTAGGTTTTCAATTTGGGGTTTTTCAATTTGGG GTTTTCAATTTCTAACTAACCTTCAAGCTTCAAGTCTTCAACAGCAGCAGAGAGAGAGAGTGGTGGTGCGTTGGGCGGCC GCCGGTGGGCGGTGGTGGTGGACTGGTGGCGTTGGTGGGCTGTGGCTGCCGCCTGGTGGGTTGCAGCGTTGAGAGAGAGA GAGAAAAGAGTGAACACTGAAACAGTCGAACCGTGAATCAATGAGTGGTGCCGTGGTGGTGGCTGGGGCCTGGTGTAGTG GTGGTACCGTGGTGGTGGGCTGGTGGCCGGTGGTGGTCTGGAACTCTGGATCGTGAAGGTGAGAGTTGAGACCGTGAGAG AGTGAGTGCGTGAGGAAGAGAGAGAGAGAGAGGAGTGTGGAATGAGTGACTGAGTGTTGACTGGGACCTGGGTGCAATTT TCAAATTTCAGGGGGTTTAAAAACAAATCACTCTAGGGGGGTAAGTAGGAAATTTTTTTTCAGGGGGTTCAGTTGAACCC CCTCAGTTCAACGTGGGTCCGCCCCTGCTTGAAAGGGTTCAGCATCTTCTGTAGACGAATGCTTGCATTTTGTTTTTCTT ATGAAGGTGTATTTTTGATTTATGAACGCAATTAGTTTATTTTTTGATTTATGACAGCTATGCCTTTTCTCTCTATACTA TTTCATATTGTTGCCTTATTCTGTGTGTAAAAAACTCTCATTTGATCATTTGGGCGATACTGCAAAACCTTTATACATAA TCAAATTTAGGATTAAGCACTCTTTGAGGTCAAATTCCGGATTCATTCTTAATCAAGTGTTTTTTTTATATATATAAACA CTGAAATTATCATTTAACATATGTAAAATTGTGAGAAATACGAATATAAGAAAGAGAATGTGATCCCTAATGAATGAAAA AAAAAACACCTGCCAAAGGTGAACATGATAACTTACTCTATTCAGCACAACAGTAAAAACTGCATATGTGAAACTACATC AAAGTTTTATCCTTCAAATTACAGAGATAGAAGTTGAAGGAGTAAACAAATATGAACATGGAAAGCAAATTTTTAAAAAT TTAGTAATATGCAGCATGGAAAGATTGTGATTCTACCATGTAAAACCGAAGAACAATGAGCACTTTTTTTCCGAAAGAAA AATATATTGAAATATATAGATAGTTGGGAAACAACACCTCTCAACATAGTTGAGATTACAGTGACCAAGCCAACAAAACA AGTTGACAAAAACCCAACCACTACAAAAAAAATTCCACAAAAACCTCAAACACAAACCCCACAAGCATAAGCACATACTT AACAATGAGAAATTCTTAATTGCAAATGACTCATCAAATGATATTTTCATCATTTCAATTATAAATGGACATGTATATGA AAATATTGTCATATAAAAAACATTTCTGACATGGATCCCCCTGTCTTCACAGTTCAGAATGAGGCCATAAACATAACAAT TTACAATTCACATTAAACAATAGCAAAAATATCTCAGTTCTGTTTCTGTTGTTCCAACATGAAACAAGACAATGCTACCA AGTTAGGAAGCATAACATCCTTGTGACTTGTTCAAACTAAAAGCTAGTAAGCACATGAATAAACAAACAAATACCCAATT CCACATATTAAAAATTGCATTCATCTAAACTAATACTAATAATCCATACATTTACACTCTAAAACATGATCAATAGCATC AAAATCACTAATTAACTTACACTAATTTTCCTTAATCATGATTTCAGATTAAACCAAAGAGCAAAAAAGAGCAACCATAT TAGATTGTTGATAAATTATAATTCAGCAGTTGCAGCAGCATTGACAAAAAAGAAAAAGAAAAACTGAACCTCATCAGATC AGAGAAAGTGAGAGGATGAAGCTGAAGCAGAAACAGAAGAAGAAGAAGCCTTTGCTGTCTTGAGATAAATTAGCAGAAAG CTTTGAAGGCACTTCATTCTCTCCTTGATGGCTTGAACATCGACCTTGATTGTTTCCAAGCTTCCTTTCAGAGAACGAAC AACCAGCAAGAGATTATCCAACTGAGCCACCTCGTTTGAGAAAGAATTCCTCTCTTCTTCTTCTTCTTCGTCTTCTTCCT CCTCTTCTTCTTCATCGTTCTGCGGTGGTTGTTGTGGCGGCGGAACAGGGGCATAATTGTAATTTAGCTGCGACTCGAAC GCGTTCATGTCATCCATGGCTTTGGATGCGAGATCGGTGATGTCGGTGAACGATCTATGGAGGTGATTCTTGACAAATTG AGGATCAACCACCAGCGATTTCCACAACTTGCACACGCACCGGAATTGCAATGGATTGCTCACCTCAACCCTAGACAGGA TTTCGATCATCAGTTCCTCCGGCAGGACGACGCTCGCCGTCGATGCCGATGCCGATGCCGCGTCGTCGATCATACGACGG CGCTTCCGCGTCATGATCGCCATGGTGGTGGTGAAGGCTTCGAGGGTTTTCAGTGCTCCATCGTTTCGAATCGGGTCGGA ATGTGTTGGCAGTTTCGGTTTTAGGGCTTCGATTTTGATGCTATTGGAATTCAAACCGTTTCATTTTTTGTTATGGGAAA ATTTTGAATAATTAAAGCAATAAATACTCTATAATTAAGTTGATGCTTTCATATCATTTTCATCTTTTAAAATTCGTGTG TATTTTATGATAAAAAAATG
CDS sequence (LotjaGi6g1v0299800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTCATATAGTAGCAAGGACTTGTCAGAGTGGTTGTCGTTCGACCTGGTGGAGCAAATCCTATGGAGGCTTCCGGT AAAGTCCCTCTTGCCATTCTGCACCGTCTGCAAGTCATTGAATTCCACAATCTCCGATCCCAAATTCGCCATAAACCATC TTCTCTGCTCAAAGAAGAATCTCACTCACCACCGCATCTTACTTTCCCGACGTGACATGCCACCGAAGTCTCTCAGTGCT TACCCTCTCTATGAGGAACGCCGCTCATGCATTTTCAATGGTCACCCTAAAGGGACGCCGCTCAATTACCCCCGGAGCAA TCCAGATTCTGATTTCATCGTTGGCTCTTGCGACGGAATCCTATGTTTCGCCGCCGTCGCCGGCGGTGAGGACAGACCGT TTCTCGTGTGGAACCCTTCCATTAGAAAATTTAAGGAACTGGAGCCTTTGGAAACCAAACATCCTCATCAGAACCCTGTT CCAATTTATGGTTTTGGGTATGATCATTCTTGTGATGATTACAAGGTGATTGCAGGGTTTTGTTATAAATTGCCTGGTGA TGTTTTCAAATGCCAAATCAATGGTAATGATTTGAGGACTAACGTTTGGAGAAGGAAAAATGTTCAGGATTTCCCTGGTT TGCCCATGCCAAATGATGAGATAGGAAGATTAGTGAGTGACACTGTTAATTGGTTGGTGAAGTCTACTAGTTCATTTGTT ATTGTTTCTTTTGATTTGGGGGAGGAGAGTTGTCAAGAAATTTCACAACCTAATTATGGAGTTGATTCTAGTGTTTTTGT TGATCATCCAGATATGTTTTGTTTGAAGTTGGAGGTACTGAGGGATTGCTTGAGCATTATTGTTCATGTTAGGGATTTCG AAGACAATGAGGACTATGAATATTTATGGGTTATGAAAGAATATGGAAATCGAGAGTCTTGGACTAAACTGTTCAAAGTT CCTCACATGAAACTCAGCATACGACCCTGGTATGGTTCGTTTGCCCGGATAGTCTGTATTTTAAAGGATTCCAAAGGAGA TGATACATTGTTCATGCGTTGGGGGTCAACTTTAGCAGTTCATAGCTCAACTTTAACTGTTTTCAATTGCAACCATGATG GCGTTTGCGTGTTTGAAAGATTCAAACCTTCATTTTCCCTGGTATTTATGTGGAGAGTTTTATATTTAGGATGTAGATGC TATGCCAGGTGA
Protein sequence (LotjaGi6g1v0299800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSYSSKDLSEWLSFDLVEQILWRLPVKSLLPFCTVCKSLNSTISDPKFAINHLLCSKKNLTHHRILLSRRDMPPKSLSA YPLYEERRSCIFNGHPKGTPLNYPRSNPDSDFIVGSCDGILCFAAVAGGEDRPFLVWNPSIRKFKELEPLETKHPHQNPV PIYGFGYDHSCDDYKVIAGFCYKLPGDVFKCQINGNDLRTNVWRRKNVQDFPGLPMPNDEIGRLVSDTVNWLVKSTSSFV IVSFDLGEESCQEISQPNYGVDSSVFVDHPDMFCLKLEVLRDCLSIIVHVRDFEDNEDYEYLWVMKEYGNRESWTKLFKV PHMKLSIRPWYGSFARIVCILKDSKGDDTLFMRWGSTLAVHSSTLTVFNCNHDGVCVFERFKPSFSLVFMWRVLYLGCRC YAR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 8 | 71 | 64 | 1.96E-9 | ||
| SMART | 13 | 53 | 41 | 1.7E-5 | ||
| PANTHER | 18 | 355 | 338 | 3.0E-44 | – | |
| PANTHER | 18 | 355 | 338 | 3.0E-44 | – | |
| TIGRFAM | 115 | 323 | 209 | 1.5E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0299800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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