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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0301100 |
| Transcript ID | LotjaGi6g1v0301100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein interaction domain protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|I1MFB8|I1MFB8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0301100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61871060..61872416) extracted from Lotus japonicus Gifu genome v1.2.
TCACAAATGGTGTTAGGTGGCGAGAGCAGTGGGAGAAACTACGTCTCTTACTTAACTGAGATGAAGAGATTAGAAATCCT AACACCACCACCTTCAATATCCTCCTCCTTAAACCCTTTAGGAGACTCATTGCAACCAATCCTTCCATTTGAAATCATGG AGGAAATTTTGTGCAGGCTTCCAGTGAAGTCCCTTGCACAATTTTGTTGCGTATGCAAGTCTTGGAATTCCCTCATTTCT GATCGCAAATTCACCAAAAAGCACCTCTATCGGTCATCAATGAATCCCACCCGCCATCGCCTTATTTTCAGCCCGTCTCG CTTTCTACATTTCGTTCGCACGTCTTTCCCTCATGCTTTCATTTCCAACCATGTTACCGAGGACACTGTGCGCTTGGACC ACCCTCTCAACAATCCATACAGTGATTCAATCATTGTTGGATCTTGCGACGGCATCTTATGTATCACTATCAATCCACAT GACATCGTTTTATGGAATCCTTCCATTCAGAAATCTAAGAAATTGCCCACCTTGGAAGAGCCTAGCTACATAAGAGACTA CTTTAATCACACTGTATATGGGTTCGGTTACGATCATGTGGCTGACAATTATAAGGTGATTGCAGTTTCCCCATATGTTT GTGAAGCCAAAATTCATACTTTGGGCACCGATTCCTGGAGAAGGATTAACAATTTTCCTTATTTTTCAAGTGAAGAATCA GGTAAATTAGTGAGCAGCACACTTAATTGGTTCTCTGGTGTTTCTCTGAATATTATTTCTTTTGATTTGGTGAAGGAGTG TTGTCAAGAACTCTCCCCACCTGATTATGGAGGAAAACATGTTATTGTGACGTTGGGGGTGTTGAGGGATTGCTTGTGCA TCTTTTCTTATGGTTTCACTTTCTCTGAAATTTGGATCATGAATGAGTATGGAAATAAAGACTCTTGGACCAAATTATTC AGTGTTCCTGACAGCTTTGATCTATGCACCAGGGTGCTTTATTTTTATGAGGATGATGAAGTAGTCCTTGAATACAATTC AAATTTGACTATTTATAACTACAGAAATGGTGCGTCTAGGAGTCCTGATACTGAGTACAACACAAGAATTTTGGAATGGA TGGTCCCACAACGCTACATTGAGAGTTTAGTATCACCTTGTCCGTGATAGTCAATTTATCCTTGATATATCAAGAATTAT ATGACATGTTGCGTCAAAAGGTTGATCTAGAATAATCCATATGATAGTTGATGGTCCAGGGAATCCTGCATTTTGAAGAT TTGCTTTGTTAATTTTCAGTTATTAGATAATAGGATTGTTAGTTCTTTCATCATGTATTGCGTTTTAAATAGTTCAC
CDS sequence (LotjaGi6g1v0301100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTTAGGTGGCGAGAGCAGTGGGAGAAACTACGTCTCTTACTTAACTGAGATGAAGAGATTAGAAATCCTAACACC ACCACCTTCAATATCCTCCTCCTTAAACCCTTTAGGAGACTCATTGCAACCAATCCTTCCATTTGAAATCATGGAGGAAA TTTTGTGCAGGCTTCCAGTGAAGTCCCTTGCACAATTTTGTTGCGTATGCAAGTCTTGGAATTCCCTCATTTCTGATCGC AAATTCACCAAAAAGCACCTCTATCGGTCATCAATGAATCCCACCCGCCATCGCCTTATTTTCAGCCCGTCTCGCTTTCT ACATTTCGTTCGCACGTCTTTCCCTCATGCTTTCATTTCCAACCATGTTACCGAGGACACTGTGCGCTTGGACCACCCTC TCAACAATCCATACAGTGATTCAATCATTGTTGGATCTTGCGACGGCATCTTATGTATCACTATCAATCCACATGACATC GTTTTATGGAATCCTTCCATTCAGAAATCTAAGAAATTGCCCACCTTGGAAGAGCCTAGCTACATAAGAGACTACTTTAA TCACACTGTATATGGGTTCGGTTACGATCATGTGGCTGACAATTATAAGGTGATTGCAGTTTCCCCATATGTTTGTGAAG CCAAAATTCATACTTTGGGCACCGATTCCTGGAGAAGGATTAACAATTTTCCTTATTTTTCAAGTGAAGAATCAGGTAAA TTAGTGAGCAGCACACTTAATTGGTTCTCTGGTGTTTCTCTGAATATTATTTCTTTTGATTTGGTGAAGGAGTGTTGTCA AGAACTCTCCCCACCTGATTATGGAGGAAAACATGTTATTGTGACGTTGGGGGTGTTGAGGGATTGCTTGTGCATCTTTT CTTATGGTTTCACTTTCTCTGAAATTTGGATCATGAATGAGTATGGAAATAAAGACTCTTGGACCAAATTATTCAGTGTT CCTGACAGCTTTGATCTATGCACCAGGGTGCTTTATTTTTATGAGGATGATGAAGTAGTCCTTGAATACAATTCAAATTT GACTATTTATAACTACAGAAATGGTGCGTCTAGGAGTCCTGATACTGAGTACAACACAAGAATTTTGGAATGGATGGTCC CACAACGCTACATTGAGAGTTTAGTATCACCTTGTCCGTGA
Protein sequence (LotjaGi6g1v0301100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLGGESSGRNYVSYLTEMKRLEILTPPPSISSSLNPLGDSLQPILPFEIMEEILCRLPVKSLAQFCCVCKSWNSLISDR KFTKKHLYRSSMNPTRHRLIFSPSRFLHFVRTSFPHAFISNHVTEDTVRLDHPLNNPYSDSIIVGSCDGILCITINPHDI VLWNPSIQKSKKLPTLEEPSYIRDYFNHTVYGFGYDHVADNYKVIAVSPYVCEAKIHTLGTDSWRRINNFPYFSSEESGK LVSSTLNWFSGVSLNIISFDLVKECCQELSPPDYGGKHVIVTLGVLRDCLCIFSYGFTFSEIWIMNEYGNKDSWTKLFSV PDSFDLCTRVLYFYEDDEVVLEYNSNLTIYNYRNGASRSPDTEYNTRILEWMVPQRYIESLVSPCP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 38 | 126 | 89 | 2.7E-10 | – | |
| SUPERFAMILY | 44 | 118 | 75 | 3.14E-19 | ||
| Pfam | 46 | 86 | 41 | 5.4E-11 | ||
| SMART | 46 | 86 | 41 | 1.7E-11 | ||
| ProSiteProfiles | 46 | 91 | 46 | 10.001 | ||
| PANTHER | 49 | 364 | 316 | 3.9E-59 | – | |
| PANTHER | 49 | 364 | 316 | 3.9E-59 | – | |
| TIGRFAM | 145 | 351 | 207 | 5.8E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0301100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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