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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0301300 |
| Transcript ID | LotjaGi6g1v0301300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein interaction domain protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|A0A0L9VEL9|A0A0L9VEL9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0301300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61877414..61879902) extracted from Lotus japonicus Gifu genome v1.2.
GAGTCTGAGTTCCTAAAAATGCATTTGCGTTAACATATAAGTCAATTGCCGCATGATTGTTCAAACTCAAGTAGAAGTTT TGGGTTCAACTCTCTAAATAAAATTCCTTCTTCTTTTCATTTCCTTCCTCTTCTTTATCTTGGACTCAAGCAAAGCAAGT GTCTTTCCAAAACTGAAACGTGGCATTGTCTCATGTATCAAACATCAAAGTTTTCAATTCATGGGTTACTTTATTAGAGT TGCGCAATCACAGTAAGATTATCACTATCATCATTATCATCTTCATCCTTATAATCATCCATCACCACACACATGAACTA CTCACACTCACACTCACACTCACACACTTTTGATCACCGATCACCACCACAATAACAACCTTCCTTATCTCTAACATGTC ATCACAGGGCGGCGCCGGTGGCTCCAGCCACCGTGTAAGCTCCACCAGGAAGAGAGAGCGACCCATCAATCCCACGGACC AAACCTCACTACTACAACTACTACTTCCACCTTCCTCTGTTCAGAAACAGAGCCACTTGAAACAGAGTCAGCAGAATCAA GCTATGGCAGTGGCAACTTTCCTCCCTGATGAACTCGTTGTTGAAATCCTCTCAAGGCTTCCAGTGAAGTCTCTTCTGAA GTTCAGGTGCGTGTGCAAGTCATGGATGTTACTGATTTCTGATCCTTACTTCATCAAGAAGCATCTCCACTTGTCAAAAC AGAGCACTCTGTTCAACCATCATAGGATCATATTGAGTGCAACAACCGCTGAGTTTCACCTCAAATCATGTTCCGTGAGC TCTTTGTTCAACAGCACATCAACTGTTTGTGAGGACCTTAACTATCCGGTGAAGAACAAGTACCGGCATGATGGAATTGT TGGCTCTTGCAATGGTTTGCTCTGTTTCGCCATTAAAGGTGACTGTGTTCTTCTCTGGAATCCTTCCATCAGGGTCTCCA AGAAATCACCGCCTCTGAATAACAATTGGAGACCAGGGTGTTTCACTGCTTTTGGGCTTGGGTATGATCATGTCACTGAG GATTACAAGGTGGTGGCTGTGTTCTGTGATCCTAATGAGTTCTTCAGTGAATCTAAGGTGAAAGTTTATAGTATGGGAAC AAATTCTTGGAGGAAGATTCAGGATTTCCCTCATGGTGTTTCACCCTATCAAAGCTCTGGGAAATTTGTAAGTGGCACTC TCAATTGGGCTGCTAATTACTCTGTTGGTGTGAGTTCTTTGTGGATTATTGTTTCTTTGGATCTTCAGAAAGAAACATAT AAGGAAATTCTGCCACCTGATTATGAAAAGGAAGAATGTTCAACACCTACTTTGAGTGTTTTAAAGGGATGTCTCTGCAT GAATTATGATCACAAAAGAACTGATTTTGTTGTGTGGATGATGAAGGACTATGGAGTGAGAGAGTCTTGGGTGAAATTGG TGACAATTCCTTATTTGCCTAATCCTGAAGATTTTTCATATTCAGGGCCTTATTTCATCTCAGAGAATGGTGAAGTGCTG TTGATGTTTGAATTTGACTTGGTTATGTATGATCCAAGAGACAAGTCATTTAGGTATCCCAGGATTGAGAGTGGGAAGGG TTGGTTTGATGCTGAGGTCTATATTGAAACCTTGATTTCACCAATGAAGATTTAAGGTTGGTGTGCTAAGGAAGAATAAA AATGAAGTGAAGTATTTTAAATCCTTCTCTAGTTTTCTCTGTGTTTATATGCTTTGCCATTAGATGTATTATATGTTTCA GAACTGAGAGGCAAATCAGTGTATAGATGTTGTTAAGATTTGATGATAGGTTCATCTATTTGTGTGTATGAGAAAATTCT AGTATGAAAACAAGTATATGCTCTCTTGTATTATGGTAAGAAGCATATAATTGGTGACTCAACTTCAATTCTGTTGAATT TCTGAATGAAGAATCTATAGGCTTTTATGAAGTATAAAAGATAAGGAAGGAACTACTTTTGAGAAACAGGGCACATTCTG TCAGTGAAGTATAAAAGAGGAAAGCTTTTACATATACTCCTATAGGAAACTCTATTCCATTGTCTATATAACAAAGCACT AAGCTTTGCTTGACCTTAGAAAAAGCCTAGAATGGAATAAAGTAAAAAGCTTGGGAACCAGGTTCTCTAGCACAATACTG AAGGTAGATTTGTGGCTCATATAGCATCTTTGTATCAGATTCTCTAATCAATTGCAGAAGTATCTTGCAGTTTTAGAATT AATTGCAGAAGTATTTCTACACATGCACTAATGGAACACACTATAGAATGATGGATCGTAGGGTGACCTTGTCTAGATTT TCTTCAGTTTCTGGTTTAAATTGTAGTTGCAGTATGGAATGTATATAAATGGTGTATTAAGTATTAACTTCCATTGCATG GGCGACTCTTCCTTTTAGAACATGTTCGTGCGAGTTTGTTTTGACGTTGAAGCCAACACAAATGTGATTTGACGTATTTC AAAGTATTA
CDS sequence (LotjaGi6g1v0301300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATCACAGGGCGGCGCCGGTGGCTCCAGCCACCGTGTAAGCTCCACCAGGAAGAGAGAGCGACCCATCAATCCCAC GGACCAAACCTCACTACTACAACTACTACTTCCACCTTCCTCTGTTCAGAAACAGAGCCACTTGAAACAGAGTCAGCAGA ATCAAGCTATGGCAGTGGCAACTTTCCTCCCTGATGAACTCGTTGTTGAAATCCTCTCAAGGCTTCCAGTGAAGTCTCTT CTGAAGTTCAGGTGCGTGTGCAAGTCATGGATGTTACTGATTTCTGATCCTTACTTCATCAAGAAGCATCTCCACTTGTC AAAACAGAGCACTCTGTTCAACCATCATAGGATCATATTGAGTGCAACAACCGCTGAGTTTCACCTCAAATCATGTTCCG TGAGCTCTTTGTTCAACAGCACATCAACTGTTTGTGAGGACCTTAACTATCCGGTGAAGAACAAGTACCGGCATGATGGA ATTGTTGGCTCTTGCAATGGTTTGCTCTGTTTCGCCATTAAAGGTGACTGTGTTCTTCTCTGGAATCCTTCCATCAGGGT CTCCAAGAAATCACCGCCTCTGAATAACAATTGGAGACCAGGGTGTTTCACTGCTTTTGGGCTTGGGTATGATCATGTCA CTGAGGATTACAAGGTGGTGGCTGTGTTCTGTGATCCTAATGAGTTCTTCAGTGAATCTAAGGTGAAAGTTTATAGTATG GGAACAAATTCTTGGAGGAAGATTCAGGATTTCCCTCATGGTGTTTCACCCTATCAAAGCTCTGGGAAATTTGTAAGTGG CACTCTCAATTGGGCTGCTAATTACTCTGTTGGTGTGAGTTCTTTGTGGATTATTGTTTCTTTGGATCTTCAGAAAGAAA CATATAAGGAAATTCTGCCACCTGATTATGAAAAGGAAGAATGTTCAACACCTACTTTGAGTGTTTTAAAGGGATGTCTC TGCATGAATTATGATCACAAAAGAACTGATTTTGTTGTGTGGATGATGAAGGACTATGGAGTGAGAGAGTCTTGGGTGAA ATTGGTGACAATTCCTTATTTGCCTAATCCTGAAGATTTTTCATATTCAGGGCCTTATTTCATCTCAGAGAATGGTGAAG TGCTGTTGATGTTTGAATTTGACTTGGTTATGTATGATCCAAGAGACAAGTCATTTAGGTATCCCAGGATTGAGAGTGGG AAGGGTTGGTTTGATGCTGAGGTCTATATTGAAACCTTGATTTCACCAATGAAGATTTAA
Protein sequence (LotjaGi6g1v0301300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSQGGAGGSSHRVSSTRKRERPINPTDQTSLLQLLLPPSSVQKQSHLKQSQQNQAMAVATFLPDELVVEILSRLPVKSL LKFRCVCKSWMLLISDPYFIKKHLHLSKQSTLFNHHRIILSATTAEFHLKSCSVSSLFNSTSTVCEDLNYPVKNKYRHDG IVGSCNGLLCFAIKGDCVLLWNPSIRVSKKSPPLNNNWRPGCFTAFGLGYDHVTEDYKVVAVFCDPNEFFSESKVKVYSM GTNSWRKIQDFPHGVSPYQSSGKFVSGTLNWAANYSVGVSSLWIIVSLDLQKETYKEILPPDYEKEECSTPTLSVLKGCL CMNYDHKRTDFVVWMMKDYGVRESWVKLVTIPYLPNPEDFSYSGPYFISENGEVLLMFEFDLVMYDPRDKSFRYPRIESG KGWFDAEVYIETLISPMKI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 28 | 28 | - | – | |
| Gene3D | 44 | 199 | 156 | 2.6E-11 | – | |
| ProSiteProfiles | 57 | 103 | 47 | 10.875 | ||
| PANTHER | 59 | 413 | 355 | 1.0E-76 | – | |
| PANTHER | 59 | 413 | 355 | 1.0E-76 | – | |
| SUPERFAMILY | 60 | 117 | 58 | 7.06E-18 | ||
| SMART | 63 | 103 | 41 | 3.7E-10 | ||
| Pfam | 63 | 103 | 41 | 2.0E-9 | ||
| TIGRFAM | 163 | 388 | 226 | 4.7E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0301300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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