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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0303200 |
| Transcript ID | LotjaGi6g1v0303200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WAT1-related protein; TAIR: AT1G68170.1 nodulin MtN21 /EamA-like transporter family protein; Swiss-Prot: sp|F4HVM3|WTR10_ARATH WAT1-related protein At1g68170; TrEMBL-Plants: tr|G7IL80|G7IL80_MEDTR WAT1-related protein; Found in the gene: LotjaGi6g1v0303200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62070994..62073844) extracted from Lotus japonicus Gifu genome v1.2.
CCTTTCCTTTACTCTAATGACTTATTATATTTCAGTTTCTCTATCTCTCATTCACTATCAGCTTATCACACACACTTGTC TTCTTCAGTGAAATTTAAGCCCGTATTCAGAGTGCACTGACTAAAGATGAAAGACAATATTGGCAATGTGGTGCAGGGGT TGAAACCAACGTTGCTAATGGTGGCTGTGCAGATAGCATTTGCAGGGGTGAATGTGCTCTACAAGCTCGCCTTAAACGAT GGCATGAACTTGAGGGTGGTTAGTGCCTACCGCTTTGTATTCGCCACTGCTTTCATGGCTCCACTTGCTCTTATCCTTGA AAGGTTAGTTCCTTCTTCAATTTATAAAAAAATTATTGATCCAACTGATCCATATATATGCTTTTATTTTGTCCATGGAT GTTTGTAGAAAGAACAGGACAAAGATGACTTGGATGGTGCTGTTTCAGTCTTTTCTGTGCGGTGTATTTGGGTAGGTATG TAGTGTCATACTCCCTCCGTTCCTAAATATAAGACCTAATACAAAAAATTGCGCTTATTAAGAAAACATTAAATGTGTTC AATTAGTGTATTGGTTTTTTAAAAATGCATACATTCCTCCATATTTACCCTTTGTCATTTTCTCTCACTAATTAATGATA AGTGGTAATCAAAACTTGGGAATTGAAAACATATAATTAATGTGGAGGGTAAAAATGGAAGAGTACAAAACCTTTTGTTA GATTATTGTAACTAGGTCTTATATTTAGGAACTTCAAAATTTTGAAACTAGGTCTTATATTTAGGAACGGAGGGAGTAAT GTTTATTGATATGTTCCTTTATTATATACCACTTAATTGATACTCCTTTCAATTTATTATGGACTAATTTATTAGCACAA GTTGGTACTTGCATGAATTTCTTTCACGTATCCTGATATTCATTTCATTGATTTGATTATGCAGAGGAGCATTGTCTCAA ATTTTGTACTTAGAGTCCCTGGCTTTAACTTCAGTGACATTTGCATCTGCCATGTCCAACCTTACACCAGCCATAACCTT TATCATTGCCGCTTCCTTCGGGTAATTAATTAAAGTAATTAACCATTGATTTTACTTCATTCATATTAAAGAATCGAATT TAATTTCCTTATTCAACAGATTGGAAAAAATAAATTTGAAAACAGTAGCAGGGAAGGCTAAGATAGTAGGTACAATAACT GGAATTGGTGGAGCAATGGTACTGACTCTGGTTAAAGGCATGGAAATTAAAATTTGGTCCTTCCATCACATACACCTTTT GCATCACCAAAATGGTGCTCACCAACACGCTACAAGCACTGGTAAGAACCTTTTGGGTGCTCTCTGTGCACTAGCCAGCA GCATCTCTTACGCATTGTGGCTTACTATTCAGGTCAGTTCAGTTTGCAGGTTCAGCAACTAATTAATCTTTTGTTTAGTG TTAACTGTTAATCCTTTTATGTTCTGCAATGTTTGGTTTTAAATTAATCTTGAACTGTTGTGTCTCAGAAAAAAATGACT GAAAGTTACCAGAGTTATTACACAAGCACCGCATTGTTGTCATTTTGGGCATCAGTACTATCCGTCCTGTTTGCTCTTTG CATTGAGAGGGATTTGAGTCAGTGGAGGCTGGGTTGGAATGTTAGATTACTAACTGTTGCTTATGCGGTATGTTATTTGA TCGCTTAATAATTATTTTAAGATAATGCTAACTTTAAGCTATCATCAATAATTATATATGAATTGACTGGCATAGGGTAC AGTGGTTTCTGGACTGGTGGTGGTTGTAATTTCATGGTGTATCCAAATGAGAGGTCCTTTGTTTGCCTCTGTTTTCATGC CTCTGGTTCTTGTGATTTTGGCCTTTCTTTGTTCTCCGCTATTGAACGAAACCCTATACCTTGGAAGGTACGTATCTCAG GCTTTACTTGTCATTCTCAAAACACACATCTCAACACATTAACTAAGAAATAAGATTTTGTCACATTCTTTTCAAAAACG ATTTGTCACATTGACAGAGAGTTAATTCAACAGAAATCCTCATGTATCATGTTTTGTGCTGTTTTATAGCTTATAAATTG TTCACCTATAGTGTGATTTTTAGCCATATATGTTAAAAATGGTTAGCTAATTAAACTATAATTGATTGGTTTTGCTAATT TCAGCATCATTGGAGCAGTGTTGATTGTATGTGGCTTATATGCTGTTATATGGGGTAAAAGCAAAGAGATGAAGATGAGT CCTTTGGTGTCTTCAAATGAATCCGATACAGTCGAAATAGTCTCGAAATCTACAGTATCAGAATCAGAAGAGAAAAGCAA CAAAAATGGCATCAAATGATTAGGCAATGAATATACCAAAGGCTGATTGAGCAAGAGTTAAAGCACATAATATTGGAAGT GGCAAAGTGAGTGGGAGTTGATATTATATGCCCCATAATACATTTCTTAGTTTTTAATTTCACTTTTTCTAGAAGTTGCT TGCTGTGGTGCCTCCTCCCAAATGTAGATATGGTGCCGCCGCTTAGTTGGACCAGTAGAAAAGTACTATGTTTTATATGA GTCAGCAAGTATATTTTTCCTATGATTTTTTTTTATAATATTATTTTTGAAAATATAGTTATTATTTTTTGCTAATTGGT CCCTTCACCTAAATATAAGAGTTTAACCTTGGTAACTGTTAAAGTTAGTGTCCATCAACGTCAAAAAAAAAGTTTTCCAT CCATCTTCTCTCTCAATTGGAAATTATATTTGTTCTTCTTCTTCTCCCACTTTTCTTCTGGGATTTATTCATATCCATCT CCTCCCTCCTCCTCCTTAACCCAAACCCATAACATATGAACCCAAACCCAG
CDS sequence (LotjaGi6g1v0303200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGACAATATTGGCAATGTGGTGCAGGGGTTGAAACCAACGTTGCTAATGGTGGCTGTGCAGATAGCATTTGCAGG GGTGAATGTGCTCTACAAGCTCGCCTTAAACGATGGCATGAACTTGAGGGTGGTTAGTGCCTACCGCTTTGTATTCGCCA CTGCTTTCATGGCTCCACTTGCTCTTATCCTTGAAAGAAAGAACAGGACAAAGATGACTTGGATGGTGCTGTTTCAGTCT TTTCTGTGCGGTGTATTTGGAGGAGCATTGTCTCAAATTTTGTACTTAGAGTCCCTGGCTTTAACTTCAGTGACATTTGC ATCTGCCATGTCCAACCTTACACCAGCCATAACCTTTATCATTGCCGCTTCCTTCGGATTGGAAAAAATAAATTTGAAAA CAGTAGCAGGGAAGGCTAAGATAGTAGGTACAATAACTGGAATTGGTGGAGCAATGGTACTGACTCTGGTTAAAGGCATG GAAATTAAAATTTGGTCCTTCCATCACATACACCTTTTGCATCACCAAAATGGTGCTCACCAACACGCTACAAGCACTGG TAAGAACCTTTTGGGTGCTCTCTGTGCACTAGCCAGCAGCATCTCTTACGCATTGTGGCTTACTATTCAGAAAAAAATGA CTGAAAGTTACCAGAGTTATTACACAAGCACCGCATTGTTGTCATTTTGGGCATCAGTACTATCCGTCCTGTTTGCTCTT TGCATTGAGAGGGATTTGAGTCAGTGGAGGCTGGGTTGGAATGTTAGATTACTAACTGTTGCTTATGCGGGTACAGTGGT TTCTGGACTGGTGGTGGTTGTAATTTCATGGTGTATCCAAATGAGAGGTCCTTTGTTTGCCTCTGTTTTCATGCCTCTGG TTCTTGTGATTTTGGCCTTTCTTTGTTCTCCGCTATTGAACGAAACCCTATACCTTGGAAGCATCATTGGAGCAGTGTTG ATTGTATGTGGCTTATATGCTGTTATATGGGGTAAAAGCAAAGAGATGAAGATGAGTCCTTTGGTGTCTTCAAATGAATC CGATACAGTCGAAATAGTCTCGAAATCTACAGTATCAGAATCAGAAGAGAAAAGCAACAAAAATGGCATCAAATGA
Protein sequence (LotjaGi6g1v0303200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKDNIGNVVQGLKPTLLMVAVQIAFAGVNVLYKLALNDGMNLRVVSAYRFVFATAFMAPLALILERKNRTKMTWMVLFQS FLCGVFGGALSQILYLESLALTSVTFASAMSNLTPAITFIIAASFGLEKINLKTVAGKAKIVGTITGIGGAMVLTLVKGM EIKIWSFHHIHLLHHQNGAHQHATSTGKNLLGALCALASSISYALWLTIQKKMTESYQSYYTSTALLSFWASVLSVLFAL CIERDLSQWRLGWNVRLLTVAYAGTVVSGLVVVVISWCIQMRGPLFASVFMPLVLVILAFLCSPLLNETLYLGSIIGAVL IVCGLYAVIWGKSKEMKMSPLVSSNESDTVEIVSKSTVSESEEKSNKNGIK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| PANTHER | 10 | 361 | 352 | 1.3E-177 | – | |
| PANTHER | 10 | 361 | 352 | 1.3E-177 | ||
| Phobius | 12 | 32 | 21 | - | – | |
| Pfam | 14 | 143 | 130 | 5.1E-15 | ||
| Phobius | 33 | 43 | 11 | - | – | |
| TMHMM | 42 | 64 | 23 | - | – | |
| Phobius | 44 | 64 | 21 | - | – | |
| SUPERFAMILY | 48 | 145 | 98 | 2.35E-10 | – | |
| Phobius | 65 | 75 | 11 | - | – | |
| Phobius | 76 | 95 | 20 | - | – | |
| TMHMM | 77 | 96 | 20 | - | – | |
| Phobius | 96 | 106 | 11 | - | – | |
| TMHMM | 106 | 128 | 23 | - | – | |
| Phobius | 107 | 127 | 21 | - | – | |
| Phobius | 128 | 138 | 11 | - | – | |
| TMHMM | 135 | 157 | 23 | - | – | |
| Phobius | 139 | 157 | 19 | - | – | |
| Phobius | 158 | 189 | 32 | - | – | |
| TMHMM | 190 | 207 | 18 | - | – | |
| Phobius | 190 | 208 | 19 | - | – | |
| Pfam | 191 | 329 | 139 | 5.8E-11 | ||
| Phobius | 209 | 219 | 11 | - | – | |
| TMHMM | 220 | 242 | 23 | - | – | |
| Phobius | 220 | 240 | 21 | - | – | |
| SUPERFAMILY | 233 | 334 | 102 | 2.22E-7 | – | |
| Phobius | 241 | 259 | 19 | - | – | |
| TMHMM | 257 | 279 | 23 | - | – | |
| Phobius | 260 | 279 | 20 | - | – | |
| Phobius | 280 | 285 | 6 | - | – | |
| TMHMM | 284 | 306 | 23 | - | – | |
| Phobius | 286 | 306 | 21 | - | – | |
| Phobius | 307 | 311 | 5 | - | – | |
| TMHMM | 310 | 329 | 20 | - | – | |
| Phobius | 312 | 331 | 20 | - | – | |
| Phobius | 332 | 371 | 40 | - | – | |
| MobiDBLite | 344 | 371 | 28 | - | – | |
| MobiDBLite | 357 | 371 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of LotjaGi6g1v0303200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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