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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0304000 |
| Transcript ID | LotjaGi6g1v0304000.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pyrimidine-specific ribonucleoside hydrolase; TAIR: AT5G18860.1 inosine-uridine preferring nucleoside hydrolase family protein; Swiss-Prot: sp|B1KHA5|RIHA_SHEWM Pyrimidine-specific ribonucleoside hydrolase RihA; TrEMBL-Plants: tr|A0A1J7I5N9|A0A1J7I5N9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0304000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62138511..62144516) extracted from Lotus japonicus Gifu genome v1.2.
GCTGTGGTAATATTAATCATGTTAGGAACTCTTGGAGTTGATTTGCATGTTGTGGAAGGCAGGCCACGCCGGATTCTTTT GGATACAGATGTTGATACTGATGATTTCTTTGCTCTTCTCTACCTTTTGAAGCTTAACAGATCAGAATTTCAGTTGGAGG TTAGCAAATTAAGCAAACATTAGTCACCTTTATTTATTCCCTTATCTTTTTATTTCCTGCTTTTCATTGTGAATCATTGC TTTGATATTCAAATATACGCACAACTCTACCCTAAAAGTTAGTTTATAAGTGATGGTTGTCGTCCAATTATAATGACTTA TTTAGGCATATCATCAGTCATTGTTGTGGACCTTAACACCCCTCAAGACTAGGGCTGGACACCTACAATGTGAAGCTTGC AGAACCGAATATTTACGAGTGAACTATTTTATGAGTGACTCAATGGACGAATCTATGATAGACTCTGATATTATCTTAGA ACTTAGACTAATTCTAACTTTATCCTAAAAGCAAACTGTATCTTTGACCAACTCTTTTTTGGAATTATTTACTCCTTGAT TGCAATATTTTTTTCTTTTTTAAGCAAATCTTACTGGTAGAGATTGACTGCTATTTTTGTGGCTTAATCAAGGAACCAGC ATAGTGAAAAGGGTAAATCTTTTCTTTTTGTCAAATGAGGATATGTTCTAAAAGTTGTCAACAGTAGTCTGTTTGTCTCC ATGTGTTGTAAAATACAGACAATTCGATCTTCTGATGTTGATATTGCATATTTGCCTTGGTGGATGACCATGTTGGTTGT GCAGGGAATCACTGTGAGTGCAAATGGTTGGACTAATGCAGGACATGCTGTGAATCAAGTTTATGACTTGCTTTACATGA TGGGGAGAGATGACATATCAGTTGGAGTGGGAGGTGAGGGTGGAATACTTCCAAATGGTACCATACTCCCTAATGTTGGA GGTTATCTTCCAATTATAGAACAGGTATATGTAGTATGTGGAGTGTGTCTTTTTTTTTTCTTTTCTTTTTGGAGTATTTA CTTAGAGATAAAGCTAGATCAACAAAAGTGATAAGAAAAATTTAGAGTTAAATGACTTTTATATCATTGGACTTAAATTT TAGCAGAACAGATCTCAATTGATTCATATAACCGACCTTACTTAGTAAAAAGTGATTTTGGCGGCTGTATTTTTGGTAAA CCTCCGAGTTGATAGAAATAAATGGAGCATACATTATAGTCTGCTCATTAAGTGTGTATTTTACATACCATTTAAGTACA ACTTGAATGAACTTTCAACTCAATCCATAAAATAAATTCCGTTAATTCTTTTTAAACTTATAGTATGTATGAATATCTGT TTGCATGATAAACAAATATACCCTAACTCAATAATATAAAAAACCTTGCCTTGTAGGGAAGGTTTGTTTTTTGGGTGTTG TTTTGTCTTAGGGGGGTTTTGGGAGGTTTTTGAGAGTTTCTTTGGGCTTCCTTTCCTCTTTTGGTGAGGTTTTTTTTTTT TGGCTTTGGTCGGGTTAGTGATGGTCTCATTGATTTTTTGTGCCCTTGTGAGGAGGGTTTGTACATCTCTTGACTATTTC CTCATTAATATTATTTTACTTTCGAAAAAAAAAAAAAAACCTTGCCTTTTATACTCTGGACATTGGAATAGTAGAACAAA GTAAAATACTGCAAAAAAGAATTGGGCTAGAAATGAGAGATATGATGTGTTATGGTAGAAAACAAAGAGTTAGGAAGAAA AAGTTGATAGGAATGGTATGAAAAAAAGTGGACGTGTATATATAAAAGAGATTAAGATCTTCTGTCCCCAATCGTGTCTA ATGTTTTATCCCACCAATTAAATCCTCTCATATCAAACAAAAACCATCATGTAAGTTTGAAACTGCCATACTCATATTTT TTTAATTGACATATCAGAAATTCATTTGTAGAGACACCATTTACCATTTGGGGGACACAAGATTTTGATGCATATAAAAG TTGTTAAAATTTGGTTCATGATTCTGATGTTAAATGTGATTTCAGGAAATGACAACAGCAGGAGGTTGCAGATATAGGCA GGCCATTCCAGCAGGTCTTAGAGGGCTCTTGGACATCGATACTAACTTTGGCATCAGGAAGGCTTTCCTTCCACGGGTAT AAATATAATATACCTTGTCAATTTGACATTGTATGTTTGGAAACTCATTTGAAAATCACAGTGAAGTCAAAATCATAGTG AACAAGAACAATATTCCTCAACTTTTGCTTTGTTTACCATGATTTTGACTTCACTGTGGTTTTCAAATTAGTTTCCAAAC ATGTACTCCTTAAATTGTATTGATGAAACTAAGCTCTCTAGTTGCAAATTAAAAGCAAAACAAAAGAGAAGATGTTTAAA ATTGCATTAAAAATATAATGTGAATTGATTCATTTGTTTGAATTCTTTGTAGTATAATTACTGATACTTTTTTCTTGCTG ATTTCATCATGAAATCAGGGCAAAAGGAAATATACCCCTCTACGGCAACCAACTGTTCAGCAAGTCCTGATTGACAAAAT ATCTGCAGGTCCCATAACTGTGATTCTCATTGGAACACACACCAACTTAGCCATTTTCCTTATGAATAATCCACACCTAA AGAAAAATGTGGAGCATATTTACATCATGGGTGGTGGTGTAAGGTCAAAAAATCCAACTGGTTGTTGCCCCAAAAATGCT TCCTCTTCCTGCATAACTGGACAGTGTGGTGACCGTGGCAATTTGTTCACAGATTATATTGCCAACCCTTTTGCAGAATT CAACATATTTGGAGACCCTTTTGCAGCATACCAGGTTAGTCCTTACATTCCAGCCACAAAGTAGCCTTCAACTATATGGA GTAGTTATTAACAAATATGATTTTTGGTAAGTGTAAAAGATATGTTTGGTTCTTGACCAAAAAGTACATGTTATTTTAGG TGATTCATTCTGGTATTCCTGTTACTCTAGTTCCTCTTGATGCAACAAACACAATCCCCATCAGTGAGGAATTTTTTTAT GAATTTGAAAAGAGTCAAGACACATATGAGGCACAATACTGCTTCAAGTCCTTGAAAATGGCTCGGGATACTTGGCTTGA CAACCATTTCTATACGGTAACTTTTGAGTGCTTGTTTGGATACATAGTGAAAAACCACAGTGAAGCCAAAATCACAGTGG ATAGAAGCAACTTCCCTTGACTTTTGCGATTGTCCATCCTGATTTTGGTCTCGTTGTGCACTAAATAACTTTTGTATATG CCTATGATTCTCTCTTTTTTAGATCTGTTTTGTTTGAAGGAGTAAAAAGGACTTTGTATTGATAATGGCTCATTGTTGCC AGAGTTATTTTATGTGGGACTCTTTCACATGTGGTGTAGCAGTCTCAATCATGAGTAGCTCCAATAAAACTAAAGGAGAA AATGAAATTGCTGAAATGGAGTACATGAACATAACTGTAATTACTTCAAACAAACCCTATGGGATTTCTGATGGCTCCAA TCCATTCTTTGATGGTCTCAACGTTCCTAAGTTCAATCTGAAGAAAGGTGGGGTACATAGTGGTCATGTTCAACAAGGAC TTAGAGATCCATTTTGCATTGTGAAGAATGGGAAAGGGAAATGTCAGGTAGCTGCTTTTCAAAATACTTGCAACTTCAAT ATTATACAAACAAGCATACATATAATAAAATGTTTATAGGTTATGTATTGCAAAATGTTGCATAGGATGGCTATACATCA GAGGTGAATGGTCCAGACTCAGTGCCGGTACTCGTCGCTACGAAAGCAAAGCCTAACTGTGATGTTAGGAGTCCACTTAA AAGAGAATACTTCAAAAGCTTCTTGAATGTAAGTTCACTTTATCATATTTCATTCAAACTTCTTCAACATCAGAAGATCA CTCAGTCTTATATGGTATTTTAGATAAAACATGCACTTATTAAGCTCTTTAGAAGGAAACTCACACTAAATTCTTTGTGT TCTAACTGCTATTGAATCTTTAAAATGTTATGAGTATCTGAATTTTGCATTGTGGTGGTTCACAGGCTCTAAACCAACCA CAGCAAGCTGGGAGGTTCAACTTCACTACACAATTTCCTTACTACAAAGAAGTAACTTATAGGCCAGATTTTCAAAACAC AACACTGGGGAAACCTGTTGTGTTTGACATGGACATGAGTGCAGGAGATTTTCTTGCTCTATTTTACCTCCTCAAGGTTC CTGCTGAAGTGTTAAACCTAAAGGTATTCCAATTTTGCATGTTTATACTTTGTTTTAATCATTACTTTTATTCTTATATT GAATCAGCTGATTTATAGAGACATTGTTTGGTTCCGCGTATGAAAGCCTTAGAATCAATTCTCATTGATCATATTTCACA TTTATGTGGTTATGTAGATGTTTGGCAGTCGACGTAGCATGTTTAGATTAACTTCTCTTGTCTTAGAATAAATTCTGGAA CCCAGAAGCTACTCACAAAAGCTTCTCCACATAATTGATTCTAGATTAAGAATCAATTGCAGCCAAATTCAATTCTGTAG AGAAGCTAGAGAGAGAGAGTAACTTCTGCTGTGGACATATTCAATTACAAAAATTTATAACTGGATTTCACAACATTATC CTATTGAAATCATTTTTCCCAGAAACGTGCCCAAACATACATCATTTGAGTTACAACTCACTTTTACTAAAATCAATTCA GAGAAGGTTGATCCAATCACGCAGATAGGCTGACATAGCACCTTTGGTGTTGATTTTTTTTACTTCTTTGGTTCAGGCAA TCATTGTTAGTCCAACAGGGTGGGCAAATGCAGCAACAATAGATGTTGTCTATGACTTACTGCACATGATGGGCCGTGAT GACATCCCAGTTGGTCTAGGAGATATTTTTGCAATGAATCAGTTTGACCCAATATTCCCAGCTGTTGGAGACTGCAAGTA TGCAAAAGCCATTCCCCATGGAAATGGTGGCTTTATGGACTCAGACACTCTATATGGACTTGCTCGTGATCTGCCTCGTA GCCCCAGAAGGTGTCTAGCATGTTTGGATCAACTTCTCTTTCCTCAGAATCAATTTTCGCACCAGAAGCTACGTTAAGAA GCTTCTCCGAAAAATTGATTTTGACTTCAGAATCAATTATAGAAGGATTTCCAATGATGCACTTACTTTCATTCCTTAAA AAGTGCTTGTTAACATAATAATGCAAAGGAAATTGTTGAAAACATAAAATGGTCATGTGGAGAAAGAAGCTGCTATTATT AGTTTATTATCACTCTGAAAAGAGTAGGTTATGTAAAGAGTAAAGACTATAGGAAAATTAATTTAACAAACATGCTTTAG AAAATAATATGCTAAAGTTTACCATCTGCTATATCTATTTTCAGTTTCCTTACATGAATTTTCTAACTTAGGCAGGTTTA TACAAGGACTTTTTACACAGCATGCATGCTTGTTAACTTCCAATTTTTTTACGCCTGCAGTACACTAACACTTGGAACAT GTAACTCAGGTACGCAGCAGAGAACTCTCTGAAGTTTGGAGCCCCTAGGGATACCAATCACCCTGAACTCAGACAACCAC TAGCTATGGAAATTTGGGAGTCAGTGTTGCAAACATCAAAACCAGGGTCAAAGATTACAGTATTAACTAATGGACCCTTA ACTAATTTGGCAAAGGTTGTATCGATGAAAAATATGAGCTCAAGAATTCGGGTAAGTTGTCTAATACATCTTATTTACAA CCTTTGAGAATAGTGATTTCATGAATGTAAGAGTAGGAGTAAGAGTAACCCATGAAAAATGTTATTCTCATTTTGGTGTA CCTTATATTTTAGGCTAAAGTCAACACTGAAATTGAATATTCTATTTTGATTCTGCTTAAATGTAGTTAAGATTACTATA ATTTGCAGTGATGAAAGGCATAACACTTACAAAATGTTTCAGGAGGTTTATGTGGTAGGAGGACACATCAGTAGGAATGA AATTGA
CDS sequence (LotjaGi6g1v0304000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAGGAACTCTTGGAGTTGATTTGCATGTTGTGGAAGGCAGGCCACGCCGGATTCTTTTGGATACAGATGTTGATAC TGATGATTTCTTTGCTCTTCTCTACCTTTTGAAGCTTAACAGATCAGAATTTCAGTTGGAGGGAATCACTGTGAGTGCAA ATGGTTGGACTAATGCAGGACATGCTGTGAATCAAGTTTATGACTTGCTTTACATGATGGGGAGAGATGACATATCAGTT GGAGTGGGAGGTGAGGGTGGAATACTTCCAAATGGTACCATACTCCCTAATGTTGGAGGTTATCTTCCAATTATAGAACA GGAAATGACAACAGCAGGAGGTTGCAGATATAGGCAGGCCATTCCAGCAGGTCTTAGAGGGCTCTTGGACATCGATACTA ACTTTGGCATCAGGAAGGCTTTCCTTCCACGGGGCAAAAGGAAATATACCCCTCTACGGCAACCAACTGTTCAGCAAGTC CTGATTGACAAAATATCTGCAGGTCCCATAACTGTGATTCTCATTGGAACACACACCAACTTAGCCATTTTCCTTATGAA TAATCCACACCTAAAGAAAAATGTGGAGCATATTTACATCATGGGTGGTGGTGTAAGGTCAAAAAATCCAACTGGTTGTT GCCCCAAAAATGCTTCCTCTTCCTGCATAACTGGACAGTGTGGTGACCGTGGCAATTTGTTCACAGATTATATTGCCAAC CCTTTTGCAGAATTCAACATATTTGGAGACCCTTTTGCAGCATACCAGGTGATTCATTCTGGTATTCCTGTTACTCTAGT TCCTCTTGATGCAACAAACACAATCCCCATCAGTGAGGAATTTTTTTATGAATTTGAAAAGAGTCAAGACACATATGAGG CACAATACTGCTTCAAGTCCTTGAAAATGGCTCGGGATACTTGGCTTGACAACCATTTCTATACGAGTTATTTTATGTGG GACTCTTTCACATGTGGTGTAGCAGTCTCAATCATGAGTAGCTCCAATAAAACTAAAGGAGAAAATGAAATTGCTGAAAT GGAGTACATGAACATAACTGTAATTACTTCAAACAAACCCTATGGGATTTCTGATGGCTCCAATCCATTCTTTGATGGTC TCAACGTTCCTAAGTTCAATCTGAAGAAAGGTGGGGTACATAGTGGTCATGTTCAACAAGGACTTAGAGATCCATTTTGC ATTGTGAAGAATGGGAAAGGGAAATGTCAGGATGGCTATACATCAGAGGTGAATGGTCCAGACTCAGTGCCGGTACTCGT CGCTACGAAAGCAAAGCCTAACTGTGATGTTAGGAGTCCACTTAAAAGAGAATACTTCAAAAGCTTCTTGAATGCTCTAA ACCAACCACAGCAAGCTGGGAGGTTCAACTTCACTACACAATTTCCTTACTACAAAGAAGTAACTTATAGGCCAGATTTT CAAAACACAACACTGGGGAAACCTGTTGTGTTTGACATGGACATGAGTGCAGGAGATTTTCTTGCTCTATTTTACCTCCT CAAGGTTCCTGCTGAAGTGTTAAACCTAAAGGCAATCATTGTTAGTCCAACAGGGTGGGCAAATGCAGCAACAATAGATG TTGTCTATGACTTACTGCACATGATGGGCCGTGATGACATCCCAGTTGGTCTAGGAGATATTTTTGCAATGAATCAGTTT GACCCAATATTCCCAGCTGTTGGAGACTGCAAGTATGCAAAAGCCATTCCCCATGGAAATGGTGGCTTTATGGACTCAGA CACTCTATATGGACTTGCTCGTGATCTGCCTCGTAGCCCCAGAAGGTACGCAGCAGAGAACTCTCTGAAGTTTGGAGCCC CTAGGGATACCAATCACCCTGAACTCAGACAACCACTAGCTATGGAAATTTGGGAGTCAGTGTTGCAAACATCAAAACCA GGGTCAAAGATTACAGTATTAACTAATGGACCCTTAACTAATTTGGCAAAGGTTGTATCGATGAAAAATATGAGCTCAAG AATTCGGTTACAAAATGTTTCAGGAGGTTTATGTGGTAGGAGGACACATCAGTAG
Protein sequence (LotjaGi6g1v0304000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGTLGVDLHVVEGRPRRILLDTDVDTDDFFALLYLLKLNRSEFQLEGITVSANGWTNAGHAVNQVYDLLYMMGRDDISV GVGGEGGILPNGTILPNVGGYLPIIEQEMTTAGGCRYRQAIPAGLRGLLDIDTNFGIRKAFLPRGKRKYTPLRQPTVQQV LIDKISAGPITVILIGTHTNLAIFLMNNPHLKKNVEHIYIMGGGVRSKNPTGCCPKNASSSCITGQCGDRGNLFTDYIAN PFAEFNIFGDPFAAYQVIHSGIPVTLVPLDATNTIPISEEFFYEFEKSQDTYEAQYCFKSLKMARDTWLDNHFYTSYFMW DSFTCGVAVSIMSSSNKTKGENEIAEMEYMNITVITSNKPYGISDGSNPFFDGLNVPKFNLKKGGVHSGHVQQGLRDPFC IVKNGKGKCQDGYTSEVNGPDSVPVLVATKAKPNCDVRSPLKREYFKSFLNALNQPQQAGRFNFTTQFPYYKEVTYRPDF QNTTLGKPVVFDMDMSAGDFLALFYLLKVPAEVLNLKAIIVSPTGWANAATIDVVYDLLHMMGRDDIPVGLGDIFAMNQF DPIFPAVGDCKYAKAIPHGNGGFMDSDTLYGLARDLPRSPRRYAAENSLKFGAPRDTNHPELRQPLAMEIWESVLQTSKP GSKITVLTNGPLTNLAKVVSMKNMSSRIRLQNVSGGLCGRRTHQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 681 | 676 | 0.0 | – | |
| PANTHER | 6 | 681 | 676 | 0.0 | – | |
| SUPERFAMILY | 16 | 362 | 347 | 1.12E-56 | ||
| Pfam | 17 | 353 | 337 | 2.9E-39 | ||
| Gene3D | 485 | 674 | 190 | 2.5E-20 | ||
| Pfam | 487 | 669 | 183 | 7.4E-20 | ||
| SUPERFAMILY | 487 | 662 | 176 | 5.23E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0304000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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