Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0305000 |
| Transcript ID | LotjaGi6g1v0305000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chromatin structure-remodeling complex subunit snf21; TAIR: AT2G28290.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|F4IHS2|SYD_ARATH Chromatin structure-remodeling complex protein SYD; TrEMBL-Plants: tr|M5XIB1|M5XIB1_PRUPE Uncharacterized protein; Found in the gene: LotjaGi6g1v0305000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62224911..62226129) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTTACAAGTTTTCTCAAGTTAAAGGTTTTATTTCAACTTCCATGTTTTCTAGTTTTGTATTTGATATGTTGTTGCAT GCTTGACTTATTTGTGCAACTCCGCTCCCCCTTTCAACATGGTATTTGGTTGGTAATTATACAAAATTGCATTAACCTTA TGGCCTGTGGTTTACTTTCTGATGTAGGAAAATGTGAACTCGTCTGAAGATATATCTAATAAAACAAAAAGCGTCATAGA GTTGAAGAAACTGCAACTACTAGATCTCCAACGTCGTCTCCGTAGGTAATTGGTGTTCTTATATGAATATTTTAGTTACC CTCTCTGGTTGACAGCATCTTATTTCCTTTGTGGGCAGTGATTTTTTGAATGACTTTTTCAAGCCAATTACAACTGAGAT GGAGCATTTAAAATCAATAAAGAAACATAGGCATGGTAGGAGGGTCAAACAACTTGAAAAGATTGAACACAAAATGAAGG ACGAGCGCCAGAAAAGAATTCGTGAAAGGCAGAAGGAGTTTTTCAGTGAGATAGAAGTCCACAAGTATGTGCTCTTTCTT TTCACTCCTGTTCCTTTTCCCCTTCCAATCCAAATCTTATCTATATTAGTAAATTATTATATACCTGTTAAATTCAATTC CCATATAAATCTGTATTCTCCCTTCTTATTTTAACTTGACAATTTCTTTATCACTTGAAAATTGAAATGCAGGGAAAGAC TTGATGATGTTTTCAAAATGAAGAGGGAACGGTGGAAGGGTTTGAATAGATATGTGAAAGAGTTCCATAAAAGAAAAGAG CGTATTCATCGCGAGAAGATTGATAGAATCCAGCGGGAAAAGATTAACTTGTTGAAAATAAATGATGTCGAGGGCTATCT ACGAATGGTGCAGGTAGGTTTATCTTCTTGATAGATATAAATGGATACTAGACTTGTATAGTAGTATTCATGCTTGACAG TTATCTTCAATGATTACATTAGGATGCCAAATCTGACCGTGTGAAGCAACTTCTTAAAGAGACTGAGAAGTATCTTCAAA AGCTTGGGTCCAAGCTACGAGAAGCAAAGGCTGCTGCAGGTCCTTTTGAGTATGATGTTGATGAGGCTCGAAGTGGCAGT TTTCTTGAGAATAGTGAAGCTAATCTTGAAAACGAGAATGAAACTGATCAGGCAAAGGCAAGTTTCACATATGCATCTCT TTCTTTTGTTAAATCTTAA
CDS sequence (LotjaGi6g1v0305000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTACAAGTTTTCTCAAGTTAAAGGAAAATGTGAACTCGTCTGAAGATATATCTAATAAAACAAAAAGCGTCATAGA GTTGAAGAAACTGCAACTACTAGATCTCCAACGTCGTCTCCGTAGTGATTTTTTGAATGACTTTTTCAAGCCAATTACAA CTGAGATGGAGCATTTAAAATCAATAAAGAAACATAGGCATGGTAGGAGGGTCAAACAACTTGAAAAGATTGAACACAAA ATGAAGGACGAGCGCCAGAAAAGAATTCGTGAAAGGCAGAAGGAGTTTTTCAGTGAGATAGAAGTCCACAAGGAAAGACT TGATGATGTTTTCAAAATGAAGAGGGAACGGTGGAAGGGTTTGAATAGATATGTGAAAGAGTTCCATAAAAGAAAAGAGC GTATTCATCGCGAGAAGATTGATAGAATCCAGCGGGAAAAGATTAACTTGTTGAAAATAAATGATGTCGAGGGCTATCTA CGAATGGTGCAGGATGCCAAATCTGACCGTGTGAAGCAACTTCTTAAAGAGACTGAGAAGTATCTTCAAAAGCTTGGGTC CAAGCTACGAGAAGCAAAGGCTGCTGCAGGTCCTTTTGAGTATGATGTTGATGAGGCTCGAAGTGGCAGTTTTCTTGAGA ATAGTGAAGCTAATCTTGAAAACGAGAATGAAACTGATCAGGCAAAGGCAAGTTTCACATATGCATCTCTTTCTTTTGTT AAATCTTAA
Protein sequence (LotjaGi6g1v0305000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVTSFLKLKENVNSSEDISNKTKSVIELKKLQLLDLQRRLRSDFLNDFFKPITTEMEHLKSIKKHRHGRRVKQLEKIEHK MKDERQKRIRERQKEFFSEIEVHKERLDDVFKMKRERWKGLNRYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYL RMVQDAKSDRVKQLLKETEKYLQKLGSKLREAKAAAGPFEYDVDEARSGSFLENSEANLENENETDQAKASFTYASLSFV KS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 230 | 230 | 1.8E-118 | – | |
| PANTHER | 1 | 230 | 230 | 1.8E-118 | – | |
| Coils | 74 | 94 | 21 | - | – | |
| ProSiteProfiles | 81 | 153 | 73 | 11.881 | ||
| Coils | 175 | 195 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0305000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…