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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR014012
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 13 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.016s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0196139.1
n.a. Helicase/SANT-associated, DNA binding protein [Arabidopsis thaliana] gi|42565171|ref|NP_189132.2| chr0 95637172 95644497 +
4 domain predictions
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Lj0g3v0342229.1
n.a. PREDICTED: chromatin structure-remodeling complex protein SYD-like isoform X2 [Cicer arietinum] gi|502151178|ref|XP_004508316.1| chr0 179405884 179418904 -
2 domain predictions
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Lj0g3v0361339.1
n.a. PREDICTED: helicase SRCAP-like [Cicer arietinum] gi|502122805|ref|XP_004497900.1| chr0 190308067 190319712 -
4 domain predictions
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Lj0g3v0361339.2
n.a. PREDICTED: helicase SRCAP-like [Cicer arietinum] gi|502122805|ref|XP_004497900.1| chr0 190308067 190319712 -
4 domain predictions
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Lj1g3v3542610.1
n.a. Helicase/SANT-associated, DNA binding protein [Arabidopsis thaliana] gi|42565171|ref|NP_189132.2| chr1 40695743 40726169 -
4 domain predictions
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Lj4g3v2373760.1
n.a. PREDICTED: chromatin structure-remodeling complex protein SYD-like isoform X2 [Cicer arietinum] gi|502151178|ref|XP_004508316.1| chr4 32723246 32729214 +
2 domain predictions
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Lj5g3v0921010.1
n.a. PREDICTED: helicase SRCAP-like [Cicer arietinum] gi|502122805|ref|XP_004497900.1| chr5 13612718 13643190 +
4 domain predictions
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LotjaGi1g1v0587600.1
n.a. Helicase/SANT-associated, DNA-binding protein, putative; TAIR: AT3G24880.1 Helicase/SANT-associated, DNA binding protein; Swiss-Prot: sp|F4J7T3|EAF1A_ARATH Chromatin modification-related protein EAF1 A; TrEMBL-Plants: tr|A0A0R0J4B4|A0A0R0J4B4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0587600 LjG1.1_chr1 112783276 112801071 -
4 domain predictions
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LotjaGi1g1v0587600.2
n.a. Helicase/SANT-associated, DNA-binding protein, putative; TAIR: AT3G24880.2 Helicase/SANT-associated, DNA binding protein; Swiss-Prot: sp|F4J7T3|EAF1A_ARATH Chromatin modification-related protein EAF1 A; TrEMBL-Plants: tr|A0A072UA52|A0A072UA52_MEDTR Helicase/SANT-associated, DNA-binding protein, putative; Found in the gene: LotjaGi1g1v0587600 LjG1.1_chr1 112784174 112801067 -
4 domain predictions
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LotjaGi3g1v0083100.1
n.a. Helicase/SANT-associated, DNA-binding protein, putative; TAIR: AT3G24880.2 Helicase/SANT-associated, DNA binding protein; Swiss-Prot: sp|F4J7T3|EAF1A_ARATH Chromatin modification-related protein EAF1 A; TrEMBL-Plants: tr|A0A0R0FX49|A0A0R0FX49_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0083100 LjG1.1_chr3 9235838 9256695 -
4 domain predictions
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LotjaGi3g1v0083100.2
n.a. Helicase/SANT-associated, DNA-binding protein, putative; TAIR: AT3G24880.2 Helicase/SANT-associated, DNA binding protein; Swiss-Prot: sp|F4J7T3|EAF1A_ARATH Chromatin modification-related protein EAF1 A; TrEMBL-Plants: tr|A0A0R0FX49|A0A0R0FX49_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0083100 LjG1.1_chr3 9236493 9256605 -
4 domain predictions
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LotjaGi4g1v0346800.1
n.a. chromatin remodeling 1; TAIR: AT2G28290.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|F4IHS2|SYD_ARATH Chromatin structure-remodeling complex protein SYD; TrEMBL-Plants: tr|V7CA49|V7CA49_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0346800 LjG1.1_chr4 72595549 72619390 +
2 domain predictions
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LotjaGi6g1v0305000.1
n.a. Chromatin structure-remodeling complex subunit snf21; TAIR: AT2G28290.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|F4IHS2|SYD_ARATH Chromatin structure-remodeling complex protein SYD; TrEMBL-Plants: tr|M5XIB1|M5XIB1_PRUPE Uncharacterized protein; Found in the gene: LotjaGi6g1v0305000 LjG1.1_chr6 62224911 62226129 -
2 domain predictions
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