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LotjaGi6g1v0306700.2

Overview

Field Value
Gene ID LotjaGi6g1v0306700
Transcript ID LotjaGi6g1v0306700.2
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Protein kinase family protein; TAIR: AT5G13160.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q9FE20|PBS1_ARATH Serine/threonine-protein kinase PBS1; TrEMBL-Plants: tr|A0A1J7HM39|A0A1J7HM39_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0306700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:62386834..62389939) extracted from Lotus japonicus Gifu genome v1.2.

ATGCTCAGCCTCTTACATCATCCAAATCTTGTGAACTTAATTGGTTATTGTGCTGATGGTGATCAGCGTCTGCTTGTTTA TGAATTTATGCCTTTGGGATCTTTGGAGGATCATTTACATGGTCAGATCACGTTCCTTTTAACTGAAACCTTTCCTTCCT TAATTGTTGCGTTCATTTACATTGGAAAATAACAAATGAAGTCCTTCACAAGTCTTAAACAAGAACCTTCTAATTCCAAA ACACTGTTAACAAGATGTCTCTATAGTTTACACATAATGTAATGACTCCAATCTCCAAAAACTTTAGCTTGATGTTTTGA CAACCATCTTTACCTCTGTTATTGCTTCTGTCATTGTTAAGGTTCCACATTGACCTGAGTTATGGCCAAATAAGTATTTA TAAAGGATAGTGCAATATCCTCGCCACTGGCTTTTGGGGTAGATTTAGGCCTAACCTAAATTCTTAAGATGATATCAAAG TCTATCTTAGATCCGATAATTGACTCACTCGCATATGTTCAGTCCTTCAAACTTTTCTCTCCTAATGTCCAGACAGGTTG CACATTAACTAGAGATATGACCAAAGAAATCTTTATAAAGGGTAGAGTAATCTCACCTCTGAGCTAGCTTGTGGGGTGGA GTTAGGTCTATCCGAATTTTATGAGCATAGGGGTGAGTATTTCCATACCTTTTGTTAGGATTTCTTTGGTCATATTTCTA ATCAATGTGAGACCTTAGTCGTCATTGCCTTTCCATGACCACCACTATCATCACTCTCTGCTGTCACCATTCCCTTTGTT CCCTCTCCCTCCGCCTCCACCACTGTTACCTATACCACCCTTCATCTCGACCACCATTGCCACTACTATCACATGGTTAC CACCAATGCTAGCCTACCATCACCACTACATTCTCTTGCTGTTTCACGACACCGTTAATTGGTACCATCTATGTTTCCAC TATTATCTTTCTTTTGAAAAACATAGACCATTTCTAGTTAGTATCAACTCTGGGACTTCAGAAAATTAAATGAATATTTT GGATGGAAGGGATGTTTAAAACTTCATCACCTGAAGTTTTATAATTGTTAATAAGATGTTCAAATTAGCTGTAGGTTCTA AAAGTTACAAAATGAGGAAAAACGGCCCTGGGATGCCCATTCTTTCTTTCTCAGTGTCAGTAAGACGTTCATTTACTTTA AACGACTGAAGTATATTACGTTTCATCTTTCAAGGGAAGGGAGTACTTTTTAAAATAGAGGGTGGGTCAGGATTTGAGGG TCTCTTCGGGAAAAGCAGTGTTATTTACCTTTTCACCTCTTAATTTCTCGTGCAATCCAAACTTTAAGATTCTGACTAAT TGACCTGAACTAAAGCCAGCATTGATTGATTCTAAACCTTATGTGTGTGTGTTTGCGTGTGTGGGTCGTATGGTAATCCT CAATGACACTGCTGAGGAAAACTCAAAACAAATGAACAATCATGTAAATGGCAGCTGGGGATCAACAAAGTTAATAGCTA ATTATTGAAGATAAGGCTTTCTTTCAATACATTTATCTTCAATGATCTTGTTATGGACATGAGCTGTCTTAAGTAAAGTT TGATTCAGATCTGAAATTCTGAATTGATGTCACCTAGGAGGCTTGGTATTGTCATCTATCTAGTTACAGTCTAAAATCTG AGCTTTGTTTTCACAAATAAAAGAAAATAAATATCTTCCTGTATTGCAGTTTAGACCTTTTGTGTTGCTTGATCTAGTGC TTGCTGGTTTATGTTGCATCTGTAAATATGATGAATTACATGTGAACTGGCAGGGCTCCATGATGAACAGACCCTTGGAT AAGTTATTTAGAAGTACATTATAGTGTCGGTTTACATTACTGATAGTCATTGCTTTTACAATTGTATGTTATTATTAGAA TCTCCCAAGAAAGGTTTCAGCTTATCCACTGTAGAACTTCCTGACTCTGAATCTCTTTCCAGGAGACAAGGAGCCTCTGG ACTGGAACACTAGGATGAAAATAGCTGCTGGTGCGGCAAAGGGATTGGAATATTTACATGACAAAGCAAACCCCCCTGTG ATATATAGAGACTTAAAATCATCCAACATCCTCCTAGATGAGGGTTTTCATCCCAAGCTATCAGATTTTGGGCTGGCAAA ACTTGGGCCAGTTGGCGACAAGACTCATGTATCTACACGAGTAATGGGAACATATGGCTATTGTGCCCCAGAATATGCTA TGACTGGTCAACTAACTCTGAAATCTGACGTCTACAGTTTTGGAGTTGTCTTCCTTGAACTTATCACTGGGCGCAAAGCC ATTGATAACGCGCGTTCACATGGAGAGCACAATCTTGTTGCTTGGGTAAGTACATCACCTGCTCATCATTTTGTTAGTTT GTAGGCTGTGTACATTACGTGAATTTGTTTGTACTTAACTGTTCTGATCAGCTTCTGGATTAACATAAAACAAATTCACT GCCATTTGTCTTCATATTCGACTTTGCAGGCACGTCCTCTTTTCAAAGACCGTAGGAAGTTCCCCAAAATGGCCGACCCT CTACTTCAAGGCCGTTATCCTATGCGAGGGCTGTACCAAGCACTTGCAGTCGCAGCAATGTGTTTGCAGGAACAAGCTGC TACTAGGCCGCTTATTGGGGATGTTGTGACTGCTCTCACGTATCTGGCTTCCCAGACATATGATCCAAATGCACCCAATC AGTCTACCAGGGTTGGTCCATCAACCCCCAGGAGCAGGGATGACAGGAGGAGCATGGCAGAAAGTGTAGATAGCCCAGAC CGTGGCCGACTCGGCTCCCCTTCCACCCACAGAAACTCACCTGACTTCAGAAGGAGAGATGGCAGGGATCCAAGTGCTGG GAGCGACAATGGTGGCGGGTCAGGGAGAAAATGGGGATTGGATGAGTTAGAAAGACAGGATTCTCAGAGAGACAGCCCTG TGAGTGCTGGAAGAGCTAGAGAGACTCCAAGGAACCGCGACCTCGACCGAGAACGCGCAGTTGCTGAAGCAAAGGTTTGG GGTGAGAATTGGAGAGAGAAGAAGAGAGCAAATGCAATGGGGAGCTTTGATGCTACAAATGAGTGA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0306700.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTCAGCCTCTTACATCATCCAAATCTTGTGAACTTAATTGGTTATTGTGCTGATGGTGATCAGCGTCTGCTTGTTTA TGAATTTATGCCTTTGGGATCTTTGGAGGATCATTTACATGGGCTCCATGGAGACAAGGAGCCTCTGGACTGGAACACTA GGATGAAAATAGCTGCTGGTGCGGCAAAGGGATTGGAATATTTACATGACAAAGCAAACCCCCCTGTGATATATAGAGAC TTAAAATCATCCAACATCCTCCTAGATGAGGGTTTTCATCCCAAGCTATCAGATTTTGGGCTGGCAAAACTTGGGCCAGT TGGCGACAAGACTCATGTATCTACACGAGTAATGGGAACATATGGCTATTGTGCCCCAGAATATGCTATGACTGGTCAAC TAACTCTGAAATCTGACGTCTACAGTTTTGGAGTTGTCTTCCTTGAACTTATCACTGGGCGCAAAGCCATTGATAACGCG CGTTCACATGGAGAGCACAATCTTGTTGCTTGGGCACGTCCTCTTTTCAAAGACCGTAGGAAGTTCCCCAAAATGGCCGA CCCTCTACTTCAAGGCCGTTATCCTATGCGAGGGCTGTACCAAGCACTTGCAGTCGCAGCAATGTGTTTGCAGGAACAAG CTGCTACTAGGCCGCTTATTGGGGATGTTGTGACTGCTCTCACGTATCTGGCTTCCCAGACATATGATCCAAATGCACCC AATCAGAGAGATGGCAGGGATCCAAGTGCTGGGAGCGACAATGGTGGCGGGTCAGGGAGAAAATGGGGATTGGATGAGTT AGAAAGACAGGATTCTCAGAGAGACAGCCCTGTGAGTGCTGGAAGAGCTAGAGAGACTCCAAGGAACCGCGACCTCGACC GAGAACGCGCAGTTGCTGAAGCAAAGGTTTGGGGTGAGAATTGGAGAGAGAAGAAGAGAGCAAATGCAATGGGGAGCTTT GATGCTACAAATGAGTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0306700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHGLHGDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRD LKSSNILLDEGFHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNA RSHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAP NQRDGRDPSAGSDNGGGSGRKWGLDELERQDSQRDSPVSAGRARETPRNRDLDRERAVAEAKVWGENWREKKRANAMGSF DATNE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR27001
1 266 266 1.1E-154 –
SMART
SM00220
1 230 230 9.2E-13
IPR000719
ProSiteProfiles
PS50011
1 230 230 30.605
IPR000719
PANTHER
PTHR27001:SF558
1 266 266 1.1E-154 –
Gene3D
G3DSA:3.30.200.20
1 30 30 4.9E-10 –
Pfam
PF00069
2 168 167 6.8E-35
IPR000719
SUPERFAMILY
SSF56112
2 227 226 4.32E-65
IPR011009
Gene3D
G3DSA:1.10.510.10
31 247 217 6.4E-60 –
ProSitePatterns
PS00108
76 88 13 -
IPR008271
MobiDBLite
mobidb-lite
234 248 15 - –
MobiDBLite
mobidb-lite
234 325 92 - –
MobiDBLite
mobidb-lite
284 316 33 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004672
Molecular function Protein kinase activity Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006468
Biological process Protein phosphorylation The process of introducing a phosphate group on to a protein.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0306700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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