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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0308500 |
| Transcript ID | LotjaGi6g1v0308500.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative; TAIR: AT4G18270.1 translocase 11; Swiss-Prot: sp|O49730|MRAY_ARATH Phospho-N-acetylmuramoyl-pentapeptide-transferase homolog; TrEMBL-Plants: tr|A0A0L9VF69|A0A0L9VF69_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0308500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62571331..62573299) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGACATGGCGTTAAATTAGCAGATGCTCTTGATGGACTCGCTGGGGGTGCTGCTGCATTGGCTTTTACTGGAATGTC AATTGCTGTGCTTCCAATATGTTCTGGTTAGTGGCATGTCTTTCAATTCAAACATAGACTTTGAAAACACTCATACACCT CTACTTCACAGTTTTTTACTATTATTCTGTTGCCTTGCAGCCTTTGCACTTTATGCTAATGCGATAAGATAGAATATATG ACTTGATGAAGTAGGTCTGTTTTGAGAACTTTGTTCATGCTATTCAAGATCTCTTTCTTTCCCTCTCCTGTTCCAATGCA CCTTCATCATTATCTCCATCACTATAAGGATCTTAAGACATTTTGGTTACTTTTCATGTTATGATACTGCTACTGCATGC CTGTTGTCACCGATCAGAAGAGAAACCTCAGTTCTATTTAAGACCGAGCAATATTGCATTGCCTCCTTTGTTTTTTAACT AGGATACTGAAAATGGCCATTTTAGTACTATGGAGTACAACAGTGAATTATTAATTATGGCATGGATTTTAACATGGTCC TTTCACGTTATTTGCAAATTGCCTCCTTTGATATATTTGTTGATTTTAAATATGCCAAACCAGAGCTTGCTATATTTGGA GCTTCAATGGCTGGATCTTGTGTTGGATTTCTTCTACACAACAGATACAAAGCTTCTGTATTTATGGGAAATACAGGATC ATTGGCCCTTGGTGGTGCATTAACTGCGATGGCTGCATGTTCTGGAATGTTCTTCCCACTATTCATTTCTTCTGGAATAT TCATACTTGAGTCATCATCAGTTATCGCTCAGGTCTGTCCCATGCTTGTGAATTGTGATGCTTCCATACATTTATTTCAT CTGAATTTTTTTAGTGTTTTCAAGTATGGCTATTACACCATCATGATCTACCGCTAGATATATCATTCCCTCCTTGTTTT GGGTCTGGATTCCTGTTTCCTTTTTCATGTTTAAGTCTGTGAAGACTCTAAATTCTTCAGTTTAAGTCATGCCTCTAATT TGTGGTTGTCTAATTGAGAGTAGTTTTTTATGTAGACAACATTTTGGCTCGAGACTCGAGGTCTCTCTCCCTGAAAGTTT TGAAATGTCTATTTTCTCCACACACAAAAAACCTCTATTTTGAGTTGTTTGTGAATGTATAAGAAACTGGATTATTCATT TTGTTGGTTACCATCGAGTTGCTCATCTTTAACATGCCGTCAGTGCATAGAAATTAATCTCTTCTTAATTTTTCTCTGCA TATATTGTTTGCCAAGACCATATACCATATCCTTCTTCCTGATCTTCCTCTGTCATTACATCAATGTCATCTTCCTTGTC CAAGTTTGTTAGTTTGTCTATGTTTTAATAATCCAATTAACGATAATTTTATCTTAAAACTTGATTATATGTTGTCACTG CATTTTCAGTATTTGTATAATCCAAAAACAAAATGTTATTGTATTTCATCGGCAGGACAACACCCTTTCTTTTTTATGCA TCAAGTAGGCTTAAACATATACTTCTCCTTATCTTTATCAGCATGTCAACGTCATATGCCTAGTCCAAGTCTATGTATTT CTTAATTATCCAAGTAACAATAATTCAATTTGTTAGACCATGAACATCTTATCTGAGTTTCAGGAAAACTATGTGCTCTT TGATTTGGTCGCTAGAATTAGGAATTTAAAGATCGTATGAGGTGTCTGTCGTTTTCATGTGTAGAAATAAGTCCTAGTGC TTATTGCTTTCTCTTCTGTTCATCAGGTACTGTACTTGAAGATAACTAAGGGCTTACGGGGAGGAAGTTGGCGCTTTTTT AGAATGCCGCCCTTTCATTATTGGCTCCAACTACGTGGGTTCAGGGAACCCAATATTGTATTAGGTGCATATCTGATATC ATCTGTATTGGCTTTGCTTGGCGGCTATGTGGGTCTAGTTTCAGCATAA
CDS sequence (LotjaGi6g1v0308500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGACATGGCGTTAAATTAGCAGATGCTCTTGATGGACTCGCTGGGGGTGCTGCTGCATTGGCTTTTACTGGAATGTC AATTGCTGTGCTTCCAATATGTTCTGAGCTTGCTATATTTGGAGCTTCAATGGCTGGATCTTGTGTTGGATTTCTTCTAC ACAACAGATACAAAGCTTCTGTATTTATGGGAAATACAGGATCATTGGCCCTTGGTGGTGCATTAACTGCGATGGCTGCA TGTTCTGGAATGTTCTTCCCACTATTCATTTCTTCTGGAATATTCATACTTGAGTCATCATCAGTTATCGCTCAGGTACT GTACTTGAAGATAACTAAGGGCTTACGGGGAGGAAGTTGGCGCTTTTTTAGAATGCCGCCCTTTCATTATTGGCTCCAAC TACGTGGGTTCAGGGAACCCAATATTGTATTAGGTGCATATCTGATATCATCTGTATTGGCTTTGCTTGGCGGCTATGTG GGTCTAGTTTCAGCATAA
Protein sequence (LotjaGi6g1v0308500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGHGVKLADALDGLAGGAAALAFTGMSIAVLPICSELAIFGASMAGSCVGFLLHNRYKASVFMGNTGSLALGGALTAMAA CSGMFFPLFISSGIFILESSSVIAQVLYLKITKGLRGGSWRFFRMPPFHYWLQLRGFREPNIVLGAYLISSVLALLGGYV GLVSA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 165 | 165 | 6.2E-94 | ||
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 1 | 165 | 165 | 6.2E-94 | – | |
| Pfam | 7 | 80 | 74 | 9.3E-15 | ||
| Phobius | 12 | 31 | 20 | - | – | |
| TMHMM | 13 | 33 | 21 | - | – | |
| Phobius | 32 | 36 | 5 | - | – | |
| Phobius | 37 | 54 | 18 | - | – | |
| TMHMM | 37 | 55 | 19 | - | – | |
| Phobius | 55 | 65 | 11 | - | – | |
| Phobius | 66 | 86 | 21 | - | – | |
| TMHMM | 68 | 90 | 23 | - | – | |
| Phobius | 87 | 91 | 5 | - | – | |
| Phobius | 92 | 111 | 20 | - | – | |
| Phobius | 112 | 141 | 30 | - | – | |
| Phobius | 142 | 162 | 21 | - | – | |
| TMHMM | 142 | 164 | 23 | - | – | |
| Phobius | 163 | 165 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phospho-N-acetylmuramoyl-pentapeptide-transferase activity | Catalysis of the reaction: UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine + undecaprenyl phosphate = UMP + N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine-diphosphoundecaprenol. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi6g1v0308500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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