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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0308500 |
| Transcript ID | LotjaGi6g1v0308500.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | La; TAIR: AT5G46250.1 RNA-binding protein; Swiss-Prot: sp|Q94A38|LRP6A_ARATH La-related protein 6A; TrEMBL-Plants: tr|A0A151R8A3|A0A151R8A3_CAJCA La-related protein 7; Found in the gene: LotjaGi6g1v0308500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62577041..62582062) extracted from Lotus japonicus Gifu genome v1.2.
AAGTGATCTGAGAAATCAGAAGACCGCGGAGAGAGAAATAGCAGAAAAGAGTGCGGGGGAAATTTCTTCGAGAGAGAGAG ACTTTCCTCTCTTCTCAATGGAAGGCGCCGAACAGGGTCCACCTTCCGCCACCGCCGTGGACCCCACTGCCTCCGCCGGT GACCCCACCGCCTCGTCTCCTCCGCTCGGTGATCCCGTTACTGGTCCCGATCCTGCTACTGCCCTGGACGATGTTGATGA ACCGGAAATTCATGTCCTGATTTCAGACGATGATCACGAATCTCCCGATCACGATCACGATCAAGAGGTTGACCACCATG AGGAAGACCATGACCGTGATCACGCGGCTGAGACCGGTCTTTCCTTGGATGATCTCAAGCTCAAGATCATTAGACAGGCA AGTCCTCTTCTTCCTATCAACAATTGGCGTTCGGTGATACTGTCTTATGGAGTTGCAGGGTTCAAAAGAGTCATAGAAAT TGAGTGAAAATGGTTTTATGATTATCACTTGTTGCTTTTAGGAAATAGAAACTGTAATTTGACATGTTTCACCTAAAACC CTAGAACTTGTGTATAATTTGTTAGCTAGGGTTTGCTGTTTAGGTATTTTTCTCTGCTTCTACTAGTTTTGCTTCGATTT GTTTGCTGATTTATTGACATCTAAGTAATTGGTTGATTTCATTTCTGGACATACCTTAGTGAATTGTATATGTTGAATTT GCAGGTGGAGTATTATTTCAGTGATGAAAACCTACCCAATGATAAGTATCTGTTGGGTTTTCTCAAGAAGAATAGGGAAG GGTTTGGTAAGTGATATATACTTTTAGGATCTTGGTTTAGTTTAATTTTAAGTTATTTGTTGCCTGAATTGTTTACATGT ATTGTCCATTGTGCTGTTACTGTCTTAGTCAATCCATTTTGGAGTTTTTCAAGGTCGAAATGTAATTTGTTAGTTGCTAT TTGCTAATAAGAATATGGTAGTATGAAAATATGGAAAGTAAGTGTTGGATCTTGTTCTTTCTAGAGTGCTCTGACTTTGA ATCTGCTTAGTACTGAGAACAAAGTTGAATTGCTTGCATGTTAGTGACAGATTACGTCTAACTACTATTTGACGTATGAG TTCTTCAATTATACCTCTGGGGGATAAAGTTATGAGTATGACCATATTTGTCCTCTTTCTATACATGAGAAAAAAAAAGC ACATTTGTCTCCGCTATTGGGCTTATTTCTGCAATAGACTCTTCAGTCCAAAAGTGAGCAAGAAACAGAAACATCCACTT CTTACACTGCATGCTTATCTGAATAAGATAAAAATTAAAAACATAAAATGCATGCAGAACTACAAAGTACGCTCATTGCT TAGAAAATGATTTAAATTAAAGAAGTTACAATTCTCATTCGCGAAAATTTCATTAAGGTCTTCAAGTAATGAAGTAATGG ATCAAAGATTATTCTACAGAAAGCACTACATGATTAATATTATTTTATTTTAAGTATATCATCATTGTTTACATTACATC TGGTTTAGTATATCTACAGATAGTCTACTGCGACGATTGGTGCGCCTTTTAACTCAATTCATCAATCTCCTTTTCTATCA TCCACTTTTACAGATATCATTTTGATAAACATTAGCAAATGGAGAAAAAACAGAATCCTCTGCTGTCTGTCTTTATTTAA AATTTTAATTATTATAAGTTAGCTAATTCTAGCTCCATAATGTATGTATGTATCCTACATTTAATTCCTATCTACCCTGT CCATGCAGTTCCTACATCAGTAATTGCTTCTTTTAGAAAAATGAAGAGGCTCACTCGAGACCATTCAATTATTGTTGCTG CGCTGAAGGAGTCTTCACTGCTTGTATGATTCTTCCTTCCTTGTTTTTGTCAACATGTGCTGTATTGCAATCCTCTACTT CAATTCTAATGCATCATTTCTCTCCTCGGGCCTGCAGGTTGTTAGTGGTGATGGCAGAAGGGTTAAGCGGCTCAATCCAC TTCGTTTCAACGAAACTAGAGATCATAAGGTATTTACTTCAAGGAGCATGCTATTTCCTTTTAAGTTCCGCTCTGTGTTA TTCTGTGTCTTATTTTTGGATTCTAGTTATATACTGTTTTGGTAGAGAATTTGCCCGAGAACCGTTCAAAGGAGAACATT CAGCAAATATTCCGTGAAGCTGGAAAGTATGATCTCTTTCTTAACTTAGTCTTTTGTTTCCAGTCTCATGAAGATTTTAT AATGCATTTGTCTTCCCAAATTCTGATTATGTTAAAATGTCTTCTAATATGCAGTATAAAAAGGATAACCATTCATGACC CGCATTCTACTGCAGAGTCTGCAAAACATATCAAGCGAGAACAGTTTATTAGTAGTAAGGTATAGAACCATCTTATGTTC ACATCTAACCTTAAACATGGACCATTGTTATTTTTTCATTGCATTGTTGCTTGTATTAGAACTTCCATTTTGAAGATTTG AGTTGTTGAAGCAATGCATTGGATCATGGATGCATTTTTATATATCTTTTTCTTTTTTAAACTCTTGTTTCTCCTTATTC CTTAATATGTATATTGCTACATGTTTAGTTGATTTCGAGGTCCAGCTAAGGTACGAAGTAAAAAATGCATTCTCACATGA TGCATATTAGGCTGCAATGATTGCTGCATCTCTCAGGCCCTACCCCCGCCTTTGAAATTTACTCAATTGCTGTACTTGTC AATGTTATAAATCATCAGTCTCACTTTGTTGGTTACTTTGAAAACTTTCTGTAGGCTTGATTTGATTTTTTGGGGCAGAA TCAAACAAAGTTCATAAATTTATAATTCCAGTGTTGAGAAGTCCCACATTGACTAGAAATAAGTGTTTATAAAGGGTAGA ACAATCCTCACCTCTAATATAGCTTTTAGGATAGAGTTAGGTGTAACCCTGATTCTAAGATGGTATCAGAGCCTATCCTA GTTCTGTTTACTGGATACCACCCTTATATGAACCACCCACAAATGTTAATTTCTGTGAATTATACGCTCCAGCTGCCTAG CCCTGGGCGTAAGGGGTGTGTCTTGAGAAGTCTCACATTTATTAGAGATATGGCCAAATAAGTGTTTATAAAGTGTAGAA CAATCCCACTTCTAAGTTAGCTTTTGGGGTATACTTAGGCCTAACCCAATTTCTTATACAATCCTAACCAAGTAAATGTC TGCCTTGTCACAACTCATTCATGTACTCGCTTTTGCCTGTTTTGAGATTGGATGTAAATAAAAGAAGACGTTGCTGCAGC TTGAGCTTTATTTCCAGATTGTCGTTTATCTTCCTTCTTGATTTAGTTATATAAAGTTTTGTTTTTCACTTCCTATCGTA AGTTTGTAAGTAAGATCAATGGTACTGGCACATGAGCGGGAATACATACTGATGAAACTTTCACTTTGTCATTAGTTGCT TAAAACATTCAAGAACTACTATTCTTGGGTTACTTTTTCCGCTTTTGTGAATCTCATTTAAAATTGCCTTAGATAGATAT AGGATAACCATCTTCTGCTCTTTCTTGAACTACCCATAAGATGGTATATCAGCCTTTGGGTGTTAGATTATTCCTGCTAT ATTCTTCTCTGCCTTTGGTGCTTTTATTTTCTTATTTAAATGTTGTTTTTACTTATGCTGTCGGTCTATTTTACTTGTGC AGTTACATGCTCTTGTGGAATATGAGACTATTGAGGCTGCTGAGAAAGCTGTGAGTTTCAGTCAATACATTTTCTTATTA TCATTGAGCCTTTATTGCCTAGATCAGAAACTTAGTCTCTACCGTTCCAATGCTGGGTTAGGTGGTTATGTTCAATGATG AACAAGACTGGAGAAATGGCATGCATGTTAAACTTCTCAAGCAAATGGTTAGTTGAAAGTCTCTTCTTTGTTGGACTAAC TGACAGTTAAAGGTGTTGATGATGTTTTTATGATTTAGGGTAAATATGGACACAAAAAACAAGTTTGGAAGGGATCTAAT TCTGAGAAGAATAGCTCAGGCCATGTATCTGAACAAACTGGAGATGAGGAGAATCATGGCTCAAATGAGCATCATGAAGA TACTCCTGAGGAAGAGGTGTGTGTTGCATTTGTTTTTCACCCTTGCAGTATACTATGTGTATTTGAAATGCCTTAAATCA TATCCCCATGGCTGCTGTCCTTCTCTTTCATTAATGCAGAACACTGTCTTTTGTGCGACAAAGTGATTCAGTATTAATCT AGTTACATATGTCTTTGTTGCTTACCTTTCATTACAGGATGGGGATCATTTGTCAAAGGATAAAGGTGGGCAGCGGTATA GAAATCAAGGAAGATCAAGAAAACATAAATATCGTGCCGTAAATGGAATGGGTATATTTTATCTATATAGTTGGCTACTC CAATTGATTATATTATTATTATTGTTTTTATTTTGAATCCGCCCTCTTCAATAACCTGTTGCATTGATCCAGGCCATGGA TGTGCATCATCTACTCATGCTGCCGAAGCATCGAAGCCGCCCCCAGGACCCAAAATGCCAGATGGAACACGGGGCTTTGC AATGGGACGAGGTCGGCCTCCTGTCCCCGCTTCAAATTAGCAAGACTTAAAGCACACAACAGATTGTATTCAACAATATT TGAAGTTGTTTTAGTGATGTAAACTTGGGTCCCTACCCAACATGTGTCTGTTTTGAGTCAACTTTCAAGGGTTTGCTGGT CTGTTTTTATGTTTCATTCACGTGTGAAAGCAAGGGTTGGTGGTGGAGCACAAGGGCACAGCCATTTTCAGATTATCAGG CTGGGAAAGAAACTATTTTTGTTGTGGGTAATCCTCACCATACGAGGACTCTGTAAAGTAAAAAAAAAATCTGAATGTTA TATCTGTTAATGGCGATGTAAGTTATGTGTCTGATGGATTGAACTTTCTAGGTTGATAAACTTTAATGGCCACCCCTGTC GCTTATTAATCATCTCTAAAGTTGAATTCTACCCATAACGAAAAAGGCAAATAAATAAAAAC
CDS sequence (LotjaGi6g1v0308500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGCGCCGAACAGGGTCCACCTTCCGCCACCGCCGTGGACCCCACTGCCTCCGCCGGTGACCCCACCGCCTCGTC TCCTCCGCTCGGTGATCCCGTTACTGGTCCCGATCCTGCTACTGCCCTGGACGATGTTGATGAACCGGAAATTCATGTCC TGATTTCAGACGATGATCACGAATCTCCCGATCACGATCACGATCAAGAGGTTGACCACCATGAGGAAGACCATGACCGT GATCACGCGGCTGAGACCGGTCTTTCCTTGGATGATCTCAAGCTCAAGATCATTAGACAGGTGGAGTATTATTTCAGTGA TGAAAACCTACCCAATGATAAGTATCTGTTGGGTTTTCTCAAGAAGAATAGGGAAGGGTTTGTTCCTACATCAGTAATTG CTTCTTTTAGAAAAATGAAGAGGCTCACTCGAGACCATTCAATTATTGTTGCTGCGCTGAAGGAGTCTTCACTGCTTGTT GTTAGTGGTGATGGCAGAAGGGTTAAGCGGCTCAATCCACTTCGTTTCAACGAAACTAGAGATCATAAGTTATATACTGT TTTGGTAGAGAATTTGCCCGAGAACCGTTCAAAGGAGAACATTCAGCAAATATTCCGTGAAGCTGGAAATATAAAAAGGA TAACCATTCATGACCCGCATTCTACTGCAGAGTCTGCAAAACATATCAAGCGAGAACAGTTTATTAGTAGTAAGTTACAT GCTCTTGTGGAATATGAGACTATTGAGGCTGCTGAGAAAGCTGTGGTTATGTTCAATGATGAACAAGACTGGAGAAATGG CATGCATGTTAAACTTCTCAAGCAAATGGGTAAATATGGACACAAAAAACAAGTTTGGAAGGGATCTAATTCTGAGAAGA ATAGCTCAGGCCATGTATCTGAACAAACTGGAGATGAGGAGAATCATGGCTCAAATGAGCATCATGAAGATACTCCTGAG GAAGAGGATGGGGATCATTTGTCAAAGGATAAAGGTGGGCAGCGGTATAGAAATCAAGGAAGATCAAGAAAACATAAATA TCGTGCCGTAAATGGAATGGGCCATGGATGTGCATCATCTACTCATGCTGCCGAAGCATCGAAGCCGCCCCCAGGACCCA AAATGCCAGATGGAACACGGGGCTTTGCAATGGGACGAGGTCGGCCTCCTGTCCCCGCTTCAAATTAG
Protein sequence (LotjaGi6g1v0308500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGAEQGPPSATAVDPTASAGDPTASSPPLGDPVTGPDPATALDDVDEPEIHVLISDDDHESPDHDHDQEVDHHEEDHDR DHAAETGLSLDDLKLKIIRQVEYYFSDENLPNDKYLLGFLKKNREGFVPTSVIASFRKMKRLTRDHSIIVAALKESSLLV VSGDGRRVKRLNPLRFNETRDHKLYTVLVENLPENRSKENIQQIFREAGNIKRITIHDPHSTAESAKHIKREQFISSKLH ALVEYETIEAAEKAVVMFNDEQDWRNGMHVKLLKQMGKYGHKKQVWKGSNSEKNSSGHVSEQTGDEENHGSNEHHEDTPE EEDGDHLSKDKGGQRYRNQGRSRKHKYRAVNGMGHGCASSTHAAEASKPPPGPKMPDGTRGFAMGRGRPPVPASN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 85 | 85 | - | – | |
| MobiDBLite | 45 | 85 | 41 | - | – | |
| PANTHER | 55 | 391 | 337 | 4.3E-154 | – | |
| PANTHER | 55 | 391 | 337 | 4.3E-154 | – | |
| ProSiteProfiles | 87 | 178 | 92 | 27.587 | ||
| SUPERFAMILY | 89 | 178 | 90 | 8.62E-27 | ||
| Gene3D | 90 | 176 | 87 | 8.0E-29 | ||
| SMART | 91 | 171 | 81 | 2.5E-39 | ||
| CDD | 94 | 170 | 77 | 2.59866E-36 | – | |
| Pfam | 97 | 154 | 58 | 5.0E-23 | ||
| PRINTS | 100 | 117 | 18 | 4.9E-12 | ||
| PRINTS | 126 | 141 | 16 | 4.9E-12 | ||
| PRINTS | 157 | 170 | 14 | 4.9E-12 | ||
| Gene3D | 177 | 283 | 107 | 5.9E-11 | ||
| SUPERFAMILY | 181 | 274 | 94 | 1.9E-11 | ||
| ProSiteProfiles | 185 | 272 | 88 | 10.258 | ||
| SMART | 186 | 273 | 88 | 0.007 | ||
| Pfam | 187 | 260 | 74 | 1.0E-6 | ||
| PRINTS | 237 | 255 | 19 | 4.9E-12 | ||
| MobiDBLite | 283 | 395 | 113 | - | – | |
| MobiDBLite | 299 | 337 | 39 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. | ||
| Cellular component | Ribonucleoprotein complex | A macromolecular complex containing both protein and RNA molecules. |
Expression pattern of LotjaGi6g1v0308500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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