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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0313100 |
| Transcript ID | LotjaGi6g1v0313100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BTB/POZ domain-containing protein family; TAIR: AT5G03250.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9LYW0|Y5325_ARATH BTB/POZ domain-containing protein At5g03250; TrEMBL-Plants: tr|G7IP40|G7IP40_MEDTR Phototropic-responsive NPH3 family protein; Found in the gene: LotjaGi6g1v0313100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63117486..63120376) extracted from Lotus japonicus Gifu genome v1.2.
AAACAACATAAGGGGAATTTGAAGATAGCTACGTAAACCGGTTTTGTCGCTCCTTCAGTTAGAGAGGGCTTTAGATTCGC CATTTTGTTTGTGTGGGAAGCATCATCACAATCACATTCAGTTCTTCCTCTTCCTTTTCCTATATTTCACATGTCTTCAT TTAACCAACCTTGATACCTGCAATTGCAATTGCAATTGCAAATTTAAGCATATATAATGGCATCCATGAAGCTAGGATCA AAGCCTGAAAGCGCTTTTTATCGTGAAGGCCAAACTTGGTGAGTCACCATTCATTTATCTCTAAAGGGTTTCTTTCTTTC ATCTACCAAAATGGAACCTTTCCCTTAATTGTTGATGTTACTTGGAACATTTCCCTTATTTGTTAATGTTATTGATATAG AAATGGAACCTTGAATTCATTGATATTTTTGGATGGGGTAATAAGTTTTCAATTTTATCTGCAAATTCCCATAATTTTTG GATCATTGGAGCTAATTCTGTTTTACTTTCAGGGTTTGTACAACTGGACTTCCAAGTGATGTTACCATTGAAGTTGGTGA AATTTCTTTTCTCCTCCACAAGGTAATGGTTGGTTTAAGTTAGCTTATTGCATACATTCTGTTTGATTTTTCTCCACAAT ATTTACCTTGTGTATCTTTGTTTGTCTCTCTCTGTCATGGACTAAATCCAAGTATGTATTCATGTTGGTCCTTAGTTTGC TTCAACATTTATGATTTTGATGCAGTTTCCATTGCTTTCTAGAAGTGGCCTACTGAAGAAACTCATTGCAGAGTGCTCGG ATGGATCAAGTTGTGTTTTGCAGCTTCATGATATCCCTGGTGGATCTATAACATTCGAGCTCATCGCCAAGTTTTGCTAC GGTATCAAAATAGAAGTCACAGCATTGAATGTAGTCCCCCTCAGGTGTTCAGCTGAGTACCTCCAAATGACTGAAAGCTA CAGCGAAGGGAACCTTATTAGACTAACAGAGTCTTTTCTCAATGAAGTTTTCAGCAATTGGCCAGATTCCATAAAAGTCC TTGAAACATGTGAGAAAGTGCTACCCTTTGCAGAGGATCTCCGCATAGTATCAAGATGCATTGATTCCGTGGCTATGAAG GCTTGTTCAGATCCCGAGTTATTAAATTGGCCTGTGACACGACGAAATAGCAATGAAAACAATTCTGCAGAAAGTGTGTT GTGGAATGGAATTTCTTCTGAGAGGAATCTAGGTGATGATTGGTGGTACTATGATGTGTCTTTGTTAAGTCTGCCCCTAT TTAAAAGATTGATTTCGTCCGTTGAATCAAAGGGAATGAAATCTGAGAGTGTTGCAGCATGTCTCATATATTATCTTAGG AGGTTTCTCCCCTTGATGCATAGGCAATCAAGCTTCACTGACACAAGTCATGCAACCATTCCTACAACTTCTGATGCAGA TCAAAGGGCTGTGCTGGAAGAAATTGTGGAGTTAATTCCAAATAAGAGGGGTGTCACATCGTCAAGGAACCTTTTCAGGC TTCTCCGAACCGCAATGATATTACAGGCAAGTCCATCATGCAGAGAGAATTTGGAGAAAAGGGTAGGAGCTCAGCTAGAC CAGGTTGCAGGTGTAGATCTTCTCATTCCAAATAGGGTATACTCGGTTGAGACCATTTATGATGTAGACTGCGTTCAGAG GATTGTTGATCATTTCATGTCTATATACCAGCCTGGATCATTATCAGCTTCTCCATTGATACCAGAAGCAGGGGGGGCTG ATACATTGACGCCTATGACAATGGTTGCAAATTTGGTAGATGGATATCTTGCTGAAGTGGCTTCAGATGCTAATTTGAGC TTGACTCAGTTTCAGGCACTTGGTGTTGCAATTCCAGATTATGCTAGGCCACTTGATGACGGTATATACCACGCAATAGA TATATACCTTAAGGTTAGATCATTTTGGATACCTTGTCTACCCTCAAGAATCTTGTTCATATATGATATCAACAAACAAA CAAACAAATAAGCCAACAACTCAAGAATAAACAAAACTTTTATCCCCCTAAGCGAGGTCAACTATATGGATCACAGATCC ATATTGAAGATATCAGCTAGTTTTTACATTGGCCGCGGGAAAGCCTAACACAATTTTCATCTTAGCATTATTATTATTTT CCTTTGTGCTCAACTATTTCAAAGTTGATAATACTAATGTAAGACATCCATTACAACTACAGGTACATCCATGGCTAACA GATTCGGAACGGGAGCAATTATGCAGACTGATGAACTGCCAGAAGCTCTCATTGGAAGCGAGCACTCACGCAGCGCAAAA TGAGAGATTGCCTCTCCGAGTGATTGTTCAAGTCCTATTTTTCGAACAGCTTAGACTTCGCACATCAATATCTGGTTGGT TCTTTGTTTCTGAAAATCTTGACAGTTCACAAAACCCAAGTGGAAGACTTGGCCTCCCGAGGACTGGTGGTGGTGCTTAT CAACTGGACTCCGCGGAGGAAACAGAAAGTGTGAGGGAACATCTTAAGGATCTGGAGAAGGAATGCTCAACCATTCGAAA AGATCTGCAGAAGCTGACAAAGACTAAGAAAAGTTGGAGCATTTTCCCAAAGAGGTTTGGCTTTAGAAGAAAGTCAGAGT GTTGCAATCCAAAAGAATCAAATAGCTGCGATGTAAAGACACAGCCATCCAATGTGAATGAAAATCCAAAAAATGAAAGT AGTTGAGGGGGGTTTACCGAACTTCATAGCTCAAGTTAGTGGAGATTATTTGTACACTTCTGCTTTACATTCTATTTATT TACCTATGCAAATGTAGTTGTAACCTCTCAATCAAATTGTTTTTTCTTTTCTCTTTTTTCCTTTGAAAATATGGTGGTCT ATTAACCAAAT
CDS sequence (LotjaGi6g1v0313100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCCATGAAGCTAGGATCAAAGCCTGAAAGCGCTTTTTATCGTGAAGGCCAAACTTGGGTTTGTACAACTGGACT TCCAAGTGATGTTACCATTGAAGTTGGTGAAATTTCTTTTCTCCTCCACAAGTTTCCATTGCTTTCTAGAAGTGGCCTAC TGAAGAAACTCATTGCAGAGTGCTCGGATGGATCAAGTTGTGTTTTGCAGCTTCATGATATCCCTGGTGGATCTATAACA TTCGAGCTCATCGCCAAGTTTTGCTACGGTATCAAAATAGAAGTCACAGCATTGAATGTAGTCCCCCTCAGGTGTTCAGC TGAGTACCTCCAAATGACTGAAAGCTACAGCGAAGGGAACCTTATTAGACTAACAGAGTCTTTTCTCAATGAAGTTTTCA GCAATTGGCCAGATTCCATAAAAGTCCTTGAAACATGTGAGAAAGTGCTACCCTTTGCAGAGGATCTCCGCATAGTATCA AGATGCATTGATTCCGTGGCTATGAAGGCTTGTTCAGATCCCGAGTTATTAAATTGGCCTGTGACACGACGAAATAGCAA TGAAAACAATTCTGCAGAAAGTGTGTTGTGGAATGGAATTTCTTCTGAGAGGAATCTAGGTGATGATTGGTGGTACTATG ATGTGTCTTTGTTAAGTCTGCCCCTATTTAAAAGATTGATTTCGTCCGTTGAATCAAAGGGAATGAAATCTGAGAGTGTT GCAGCATGTCTCATATATTATCTTAGGAGGTTTCTCCCCTTGATGCATAGGCAATCAAGCTTCACTGACACAAGTCATGC AACCATTCCTACAACTTCTGATGCAGATCAAAGGGCTGTGCTGGAAGAAATTGTGGAGTTAATTCCAAATAAGAGGGGTG TCACATCGTCAAGGAACCTTTTCAGGCTTCTCCGAACCGCAATGATATTACAGGCAAGTCCATCATGCAGAGAGAATTTG GAGAAAAGGGTAGGAGCTCAGCTAGACCAGGTTGCAGGTGTAGATCTTCTCATTCCAAATAGGGTATACTCGGTTGAGAC CATTTATGATGTAGACTGCGTTCAGAGGATTGTTGATCATTTCATGTCTATATACCAGCCTGGATCATTATCAGCTTCTC CATTGATACCAGAAGCAGGGGGGGCTGATACATTGACGCCTATGACAATGGTTGCAAATTTGGTAGATGGATATCTTGCT GAAGTGGCTTCAGATGCTAATTTGAGCTTGACTCAGTTTCAGGCACTTGGTGTTGCAATTCCAGATTATGCTAGGCCACT TGATGACGGTATATACCACGCAATAGATATATACCTTAAGGTACATCCATGGCTAACAGATTCGGAACGGGAGCAATTAT GCAGACTGATGAACTGCCAGAAGCTCTCATTGGAAGCGAGCACTCACGCAGCGCAAAATGAGAGATTGCCTCTCCGAGTG ATTGTTCAAGTCCTATTTTTCGAACAGCTTAGACTTCGCACATCAATATCTGGTTGGTTCTTTGTTTCTGAAAATCTTGA CAGTTCACAAAACCCAAGTGGAAGACTTGGCCTCCCGAGGACTGGTGGTGGTGCTTATCAACTGGACTCCGCGGAGGAAA CAGAAAGTGTGAGGGAACATCTTAAGGATCTGGAGAAGGAATGCTCAACCATTCGAAAAGATCTGCAGAAGCTGACAAAG ACTAAGAAAAGTTGGAGCATTTTCCCAAAGAGGTTTGGCTTTAGAAGAAAGTCAGAGTGTTGCAATCCAAAAGAATCAAA TAGCTGCGATGTAAAGACACAGCCATCCAATGTGAATGAAAATCCAAAAAATGAAAGTAGTTGA
Protein sequence (LotjaGi6g1v0313100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASMKLGSKPESAFYREGQTWVCTTGLPSDVTIEVGEISFLLHKFPLLSRSGLLKKLIAECSDGSSCVLQLHDIPGGSIT FELIAKFCYGIKIEVTALNVVPLRCSAEYLQMTESYSEGNLIRLTESFLNEVFSNWPDSIKVLETCEKVLPFAEDLRIVS RCIDSVAMKACSDPELLNWPVTRRNSNENNSAESVLWNGISSERNLGDDWWYYDVSLLSLPLFKRLISSVESKGMKSESV AACLIYYLRRFLPLMHRQSSFTDTSHATIPTTSDADQRAVLEEIVELIPNKRGVTSSRNLFRLLRTAMILQASPSCRENL EKRVGAQLDQVAGVDLLIPNRVYSVETIYDVDCVQRIVDHFMSIYQPGSLSASPLIPEAGGADTLTPMTMVANLVDGYLA EVASDANLSLTQFQALGVAIPDYARPLDDGIYHAIDIYLKVHPWLTDSEREQLCRLMNCQKLSLEASTHAAQNERLPLRV IVQVLFFEQLRLRTSISGWFFVSENLDSSQNPSGRLGLPRTGGGAYQLDSAEETESVREHLKDLEKECSTIRKDLQKLTK TKKSWSIFPKRFGFRRKSECCNPKESNSCDVKTQPSNVNENPKNESS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 604 | 604 | 1.1E-292 | ||
| PANTHER | 1 | 604 | 604 | 1.1E-292 | – | |
| Gene3D | 5 | 167 | 163 | 1.2E-9 | – | |
| SUPERFAMILY | 17 | 129 | 113 | 3.92E-17 | ||
| CDD | 21 | 123 | 103 | 4.48815E-45 | – | |
| Pfam | 28 | 114 | 87 | 1.1E-6 | ||
| ProSiteProfiles | 29 | 97 | 69 | 10.054 | ||
| Pfam | 209 | 467 | 259 | 1.6E-89 | ||
| ProSiteProfiles | 209 | 491 | 283 | 90.855 | ||
| Coils | 541 | 561 | 21 | - | – | |
| MobiDBLite | 579 | 607 | 29 | - | – | |
| MobiDBLite | 584 | 607 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0313100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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