Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0314800 |
| Transcript ID | LotjaGi6g1v0314800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Programmed cell death protein 2; TAIR: AT4G02220.1 zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein; Swiss-Prot: sp|Q2YDC9|PDCD2_BOVIN Programmed cell death protein 2; TrEMBL-Plants: tr|C6TKD7|C6TKD7_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0314800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63301376..63306158) extracted from Lotus japonicus Gifu genome v1.2.
CTAATCTTACCAACTTTCATTGTAAAAAAAATAACTTTACACATGAAGTGGACTCAAGGCCCAAATAAGGTGTGCGAAAA AAAAACTATTACAGAGGACAAAAGCCCAAATACAAAAGAACCGTTTGTCGTACAACGGAAAAACCTAAGACTTGAGTTCC TGCGGCTAAGCGATTCTATCACCTAAGACAGATGGATACTGATGTTGTTGGAGATTCTGTCAACAAGCAAAATGATGATG AAGTTTACAAAGAGGAAGATGTAGATGAGGATTTTGATGATGATGATGATGATGATGATGATGATGATGATGATGACGAA CCTGCCACTCTTGGTTTCGTTGACAAGCCAAAGGATGAATGGTCTCTTTGCCGCCAATATTTCCCAAGCAAAGCTGGAGG AGTCCCGGCTTGGCTTGACCCTCTTAATATACCATCAGGAAGTTCATCTGTGTGTGACATTTGTGGAGACCCTTTACAGT TCCTGCTTCAGGTAATGCTTCAGTTTCAGTACTATTATTTGTCTTGTACTTGAGGATCATGATTAATTATATATATGAAA CCCTTAAACTGCTAGGTTTATGCGCCAACTGAGAAGGAAACCACGTTTCACCGGATGCTGTTTGTTTTTATATGTCCTTC TATGACATGTCTTCTCAGGGATCAGCATGAGCAATGGAAACGCCACCCTGAAAGACCATCTAGAAGGTTAGAATTAAATC ATGCTTTTAAACAGTTTTTCCATTCTTTTTACTACTTTTTTACTGTTGATCTCTGATTATTTGATAATTTAATCAAGTGT GAAGGTTTTCCGTTGTCAGTTACCTTGTGTTAATCCGTTTTACTCAAGCGAATGCCCTAAGGATGATGGAAGCCACAAGC CTGCCACCAGTGGAGGTGGGTTTTACTCATCATCATAACATTTTGTAGGGAATAATCACATTTTATCCATATCTTCCAAA ACCATTTATACAATCTCATTTTCTCTTCAATTTATGAATGTTTCGCTATTTAGGGTAATTCTTTCATACTTGTTTAGAGG TCCTCTGCTTTGGTGTGGTGAAGATAGATTGTTGTTTGTCTTTATTTGCCAGCTTTCTTAGTTGTGTCTATTGACTTATG AATCTTTATGATTGTGACTGTCTTAATGTGTGTACTACTTCATGAGCTTGAAAGAGTATTGTGATTTCATGTTATCCATC TTTCTGCCATGGCTACATATGCTCATGCTTTTATCTGGGAATAAGTATGATGTCACATTTTAGTGTGAAACTTAATTTGG TTTCCCTGAACAAGCCTCACCCATTGTATTCTTATTCTTGTGATACTCCACATTATATCAACAATTATTTTACTTGATGT ACAACTAATATATGGCCTGCTTGCCCATTAAGATAAGTGGATTGACACTTCTGATGAGTTGTGTTTTGGGGAACATGTTT GTGCCGTGCACATTCTATTATATGAATTAGGTTCCAAATCTACCTCTGCTCTGATAGAATCTCTTCTTACTTTTAGCTGC TCTTTGTGATTGGTGTGGCACTTGGAAAGGAGATAAGCTCTGTAGTAGTTGCAGACAAGTGCGGTATTGCTGTGAAAAAC ACCAGGTAACTGAATTGCTAACCTCGTCACTTAGTTATCTATCCACAACTTTGATTCCTTTAATGTTCCTTTTCTCTTTC AATAACCAGGTCATGAGTTGGCGCTCAGGGCATAAAATTGCTTGCCAGCAGATAAAAGTTTCTTCATCTGTTAGTGGACC CAACAAAAGTGTAACAACCTCATTGGAGTCTCGTAAGGGTCAGTGATTTAAGATTTGTATATTCTTAAAGGGTTTATCTG CTAGTTGGCGATAACAAAAGTACTCAATTTTTAGGTGAAGTAGAAAAAAATGTTAAAACTACTTGCAGAAGTGCTCAGAC TGTAAGAAAATAACAATCTAATCCTGAATATTTGAAGAACATAAAAAAGAAACGGAAAATATATTTAGATTTGTATCTGG GTAATAACTTCAAACATGCTTAATGGCCTCCAGAATGCAACTTTCATTGGAATTAGAGGTTATTTTGTAAAATGCTTATG ATATTTGCCTTCCTGTTATTTCTGATCTGAGATCATTACCATGCAGTTGGAAGCAACAATGTGTGGCCTGAATTTGAGAT CACCATTGAAGATGAAAGTGAATATAACAGAGACATATCCGATACCTTAGCTAATTCCTTGAGATTAAGTGATTCCTTGA TCTCGAAGAATACGGCTGATGAATCAATGAATTTAGATTTAGATAGCTTTCAGGTATTACCTCTATCTTTTATTATGAGT ATAATTTTATTCTAGTATATCATTTGCTAATTATGGTGGGTGAATAGGGTGATGATGAGAAAAAGAGCTGGGTCTCCTTC CAGGATCGAATTGCCAAAGCCCCTGAACAAGTGTTGAGGTGATTAATATTTATAAAATTTAGAGTGCTGAACTGATTTGG AGAACTGTGTTATATGCCTTAAGGAAGGGCAGATTATTTACTGAACTGAATGTGAAAAAAAAATCGACAAATGAATTATC TTGCCTTAGGAGATAAAATAAGCAGAAAAAATTTCTATTGCCTCTGACTGTCTAACCAAACAGTTGAAGGTATCAAGATT TTTTAACATCCTAAGCATATTTGCAAAATCTGGTAATGCATATTTGCTTACTCTGATAATGGTCATAAGATGATGTTATA TTTGCATAACTAACATGATAAATAAATGTTGAAGTCTGGGGGGCAAAAGTTGGGCTTAAGATTATGAATCTTAATTGCCC CTCAAAATCACATTTTCGAAGGTGCATTGCTTAGACAATCATGTTGCGATACATGATGAAATAAATGAAAAATTCAAATA TAACCTTGCTGATGTTGTTATTTTTGTGTTTAATTACAGGTATTACAGGAATACTAATGCTAGGCCACTATGGCCTGTTT TTAGTGGTCGGCCATCCGAAGCTGATATCCCTAAATGCAGCTATTGTGGTGGAACTATGTGCTGTGAGTTTCAGGTGAGA AATGAATTGTTGAAACTGAGTACCATTCTGCTTAATCAACCAAATTTCTGCTCTTGTTTTCATCAAATACTGAGTTGTTA ATTTTGGTGTTGCCAGGTTTTGCCGCAGCTTCTGTATTACTTCGGCGTTGACAATGAACCCAACTCTTTGGATTGGGCTA CAATTGTCGTGTATGCATGTGAAGCCTCTTGCGAAGCAAGTTTGCATTACAAGCAAGAATATGCTTGGGTTCAACTTTAT TCATCTTCTGCTACCTAATGATGACATTTTTACGCTCAAATTTTGAAATAGTTAAAGCATTGTGGATGAGATAGGAATTT CTTTATTTAAGTAAACCAACAATTGAGGATTACGACAGGTGATTGTGTAACTTATAGATTTGTGTTGCGTACAAAAAATT TGCCCCTCTAAAAATAGGTTATTGCTTGTTCTTTTATATTGTTGTTGGTTTTCCATATTACATTTAAAATCATTCATGAA ACCACTCACTTGTACAATCATCTTTGTCAAATACTAACTAGCTTTTCTTTAAATTTACTTTGAAATTCTTATCCATATAG AGTAAGCAGTAACGGAAACGTTTCACTGATTGAACTTAACTAACAATTAGTGTAACACATCCTGCAAATGGTACTTAAAA AACATTAACTTAAACTATTCCTATTTTTAAGAAAAAAGTGGATTGGTTAACTTTAAATATATTGTATTCTAAGAAAAAGA AACTGAAAGCAAACAAAAGAAACAGAGTTTTGGTTTCACTTATAAACTAAGGAAGTGCTTAGATTCTTAAAGAACCACCA ATGGTCCAAACACAGAAACACTTGCTCACTCACTAGTCACTACAATACAGTTATAGATCAGGGTCTTTATCAGTAGCTGG AGAGAATTGCAATATCAAATCCTTGAGAACCTGAACCAATGCCTTCAAATCCTTGGTGCCCACTTGAAGACAATCTCTGA TTAACCCTCCTTCCACCACCTCCTTTTGCAACGTCTCCACTATTTCCCTCACCACTTTCTGCAATATGCTCAAATCAATC AATACAATACTAACACAGTAACCACATATACAAAGGTTACAAGGATTAAAAACTGAAAAATATTTTTTCAGGGACTAAAA ACAACAATTACTATATTTCCAAGGACTAGAAACATATTTAAACAAATTAAATAACATAAATGTAATTACCGATTGACCAA ACGAATTGAGAAGCTTGCGGGATAGGGATTTAGTGACTTTGAGGAGTTTTTGGTAATTTCGGGAAAGCCAAGCAGAGGTT TGAGCGGGCGATTCCAAGCGAGTGAACTCGTTCAAGCTTCTCAGCAACTCGTTGATGTCGGAAACGGCGCCGTAGAGGTC AGTGAGGGAGAGGTCCTTCCATGACCAGGACCAGGCGGACCATAGGAACCTCAGGAACCCAATGCCGGACATCTTGTCGA TGCTGTCAGCCATGGCTCTGGCCCTGTCGGCGGCGGCGACATCGCCGCGGGAGGCGCGGAGGTTGGCGACGGCGGTGAGG AGGGAATGTGAGAGGGAGAAGAGGTTTCGGTAGCGGAGGTAGGAAGAGAAGGAGAGTGATTGGGAGGGTGTGACGAAGAG GAAGAAGATGAAGAAGAAGACGAGGGTTGAGTTTGATCGGACGGTTGACATTTGATTTTGAAACTCAGAAATCGCGTTTG ATCAGATTTGGATAGGAAGGGGTGATGCATTTCATATTGTTGGGTCCAGACCCCCAAAATTCC
CDS sequence (LotjaGi6g1v0314800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATACTGATGTTGTTGGAGATTCTGTCAACAAGCAAAATGATGATGAAGTTTACAAAGAGGAAGATGTAGATGAGGA TTTTGATGATGATGATGATGATGATGATGATGATGATGATGATGACGAACCTGCCACTCTTGGTTTCGTTGACAAGCCAA AGGATGAATGGTCTCTTTGCCGCCAATATTTCCCAAGCAAAGCTGGAGGAGTCCCGGCTTGGCTTGACCCTCTTAATATA CCATCAGGAAGTTCATCTGTGTGTGACATTTGTGGAGACCCTTTACAGTTCCTGCTTCAGGTTTATGCGCCAACTGAGAA GGAAACCACGTTTCACCGGATGCTGTTTGTTTTTATATGTCCTTCTATGACATGTCTTCTCAGGGATCAGCATGAGCAAT GGAAACGCCACCCTGAAAGACCATCTAGAAGTGTGAAGGTTTTCCGTTGTCAGTTACCTTGTGTTAATCCGTTTTACTCA AGCGAATGCCCTAAGGATGATGGAAGCCACAAGCCTGCCACCAGTGGAGCTGCTCTTTGTGATTGGTGTGGCACTTGGAA AGGAGATAAGCTCTGTAGTAGTTGCAGACAAGTGCGGTATTGCTGTGAAAAACACCAGGTCATGAGTTGGCGCTCAGGGC ATAAAATTGCTTGCCAGCAGATAAAAGTTTCTTCATCTGTTAGTGGACCCAACAAAAGTGTAACAACCTCATTGGAGTCT CGTAAGGTTGGAAGCAACAATGTGTGGCCTGAATTTGAGATCACCATTGAAGATGAAAGTGAATATAACAGAGACATATC CGATACCTTAGCTAATTCCTTGAGATTAAGTGATTCCTTGATCTCGAAGAATACGGCTGATGAATCAATGAATTTAGATT TAGATAGCTTTCAGGGTGATGATGAGAAAAAGAGCTGGGTCTCCTTCCAGGATCGAATTGCCAAAGCCCCTGAACAAGTG TTGAGGTATTACAGGAATACTAATGCTAGGCCACTATGGCCTGTTTTTAGTGGTCGGCCATCCGAAGCTGATATCCCTAA ATGCAGCTATTGTGGTGGAACTATGTGCTGTGAGTTTCAGGTTTTGCCGCAGCTTCTGTATTACTTCGGCGTTGACAATG AACCCAACTCTTTGGATTGGGCTACAATTGTCGTGTATGCATGTGAAGCCTCTTGCGAAGCAAGTTTGCATTACAAGCAA GAATATGCTTGGGTTCAACTTTATTCATCTTCTGCTACCTAA
Protein sequence (LotjaGi6g1v0314800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDTDVVGDSVNKQNDDEVYKEEDVDEDFDDDDDDDDDDDDDDEPATLGFVDKPKDEWSLCRQYFPSKAGGVPAWLDPLNI PSGSSSVCDICGDPLQFLLQVYAPTEKETTFHRMLFVFICPSMTCLLRDQHEQWKRHPERPSRSVKVFRCQLPCVNPFYS SECPKDDGSHKPATSGAALCDWCGTWKGDKLCSSCRQVRYCCEKHQVMSWRSGHKIACQQIKVSSSVSGPNKSVTTSLES RKVGSNNVWPEFEITIEDESEYNRDISDTLANSLRLSDSLISKNTADESMNLDLDSFQGDDEKKSWVSFQDRIAKAPEQV LRYYRNTNARPLWPVFSGRPSEADIPKCSYCGGTMCCEFQVLPQLLYYFGVDNEPNSLDWATIVVYACEASCEASLHYKQ EYAWVQLYSSSAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 48 | 48 | - | – | |
| MobiDBLite | 19 | 45 | 27 | - | – | |
| PANTHER | 38 | 411 | 374 | 8.5E-137 | – | |
| Gene3D | 177 | 221 | 45 | 1.0E-5 | – | |
| SUPERFAMILY | 177 | 221 | 45 | 2.44E-9 | – | |
| ProSitePatterns | 180 | 218 | 39 | - | ||
| Pfam | 180 | 218 | 39 | 5.5E-5 | ||
| ProSiteProfiles | 180 | 218 | 39 | 11.024 | ||
| Pfam | 249 | 406 | 158 | 3.7E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
Expression pattern of LotjaGi6g1v0314800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…