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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0318600 |
| Transcript ID | LotjaGi6g1v0318600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Photosystem II reaction center protein H; TAIR: AT3G29170.1 transmembrane protein (DUF872); Swiss-Prot: sp|Q5ZLH4|TM230_CHICK Transmembrane protein 230; TrEMBL-Plants: tr|I3T1S3|I3T1S3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0318600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63568436..63572796) extracted from Lotus japonicus Gifu genome v1.2.
TTTCATCAAGATTTAAATTTTTTTATCATAAGCAATATATCAGTGACGACTTTTGCGACAGAAATAATCCTTTAAATAAA ACCAAACTCGGTTCTTGGGATTCTAGTTGCAGATGCTAACCGTGACTTGACCGGAACTTGAAACATAATCGGCACCTCAA GATCAAGGTTTCTTCTCTTCTATTCAACTTGTTTCTGGGCATCGCTCTTTGTTACTGATTCCCCTGATTCATGCTTTCAG CCATTTTTACATGATTTTTTGAATTTTCATCCAAATTGAACTTTTTCATAGAATTTAATTGTGGGTGTGGTAGGTTTGGG GATCTTGAAGTGTTTTCTGTAGTAATTGGAATTGATTTTGTGTGATTGAGCAACACAGGCTTTTCTGGTTTTATCATTGA GATACTTCATGAAAAGCTACGTAACTGTTAAGCATGATGAAGAAACCCATGAACTCAATTCCTTTTTTGTTGGGTTATTT GGAGAGAAAGAAAAATCTAGTAGAAATTTGGATGTATTAGCAAGGCAAAGGTACCCATTTTGTTGTTTAGAAGTTTAGTG AGTGATTGTGGGATTTGGAGTTTTATTATGCTCTTTAGGTATACTAATCTGATTTTCTCTGTTTGCTGAAACTGCTGTGC TTTCGTAGTCTTCGGACCGGGTGTTGGGGAGTTTGATCATTAATCTATTGTCATTGGGATGGAGTATTCAAGATAAGAAT ATAGGGATTGTGTTTGTTCTACTGTTACTTCTGTATGATGAATTGTATAAAATTACAAATCTAATGCTGCTCTGATGGTT TTCCCCCCATTCTTCTGTCCTCTTTGCTGAACCTCACAACGTATAAGCAATTTGGTAAATCATGTTGATTGTTGATGTTA AACCAGAACATGACATAAGGCAACAACTAACACCCCAAAATATACTCTTAATATCAAATATTAAAACATAAGCTGATGTG TCTTAGATGGATAATATGCCTTATATAGGAAATTCGGAGAGTTTTTATATGAAATTATCTTCAGTTCCATTTATTCTGCC AAATAACTTTGAAGGAGTTCTAGTGCAGAAGAAAATCAAGGAATTTTATTTGAGTCATTGATAGCAATATGAAGTACCAA TGCTCATGATTTTTAATTCTACTCCCCTTGTGCTAGTGAATGGGAACTTCTCAAGATCTTTAATGTTTCCACCCTGGTTC GATTTCACTATGGGTAGAACCAAAAATGGAACTGAAGGCAGAACTATTATGTATTTATATTTATAGGCAGGATTATACCG AATGTACTCTATTTAAAGTTGTTCCAATACTGGAATTGGATAGATGATGCACTTATTCATTATACATCAATCCTCAATAC AGTTTTTTCACCCCTGTCACAACTAGTGGCTTGTGTAAAGTCCTCAACCGAATCCTAAGTTTCTTATAGTCACATGATTG AATTATGATTCTAAATTACAGGCTGCATGGAGTTTTTTTTTTGTTTTCAAATGTAATGTTAACTATACAATTTAACTATT GAATTGAATTTGGTCATTAATGTATCTCTTTTCTTTTATAATATGTTAGAGTGAAGTGATAGATTTTTTTCTTATGCAGC AGAACCCTCCCTTAACCTGAAGGACTCCATCTTCAACAACCTGCCAATTAACTGTAAGTCTGTCCCTGCCCTTCTACTCT GTGGTGTTAAAAGTTTCTGCTTCAGTTCTTTATCAGCACCCATCGGATCTTAATTTAACATGGCCCTTTATATTTGGGTT GAGGGACACAGGTCATCTTGGGTTAAAATCTTAGGAGCAAAGAGCTAAGGAAGATTGGATATGGCAACTAGACGTGTTCG ATACACCCCTCTTGCCACGGATGAGGATGATTATGTTGGTGATAGAAATAGACCATTTGATCCTCGATTTGATTATACGC CAAAAGCCTTGGATAGAGTTCCCTGGAAATCCATTGCCCTTGCACTCTTCCTGTTATTTCTCGGTACAGGACTTCTGTTC CTTTCATACTTTATCTTCACTGGTCATATGGGGGGAGAACGTTCTCAAGCATATGGCCTATTAGCCCTTGGGTTTCTTAG CTTTCTCCCAGGTATGTTGGAGTCCCAGAATGTTATTATATGTTTTTTTTATGTGTGTGAACTGTTTTTGTTTAACAAGG AAATTATAATTGTTTTTGATAAGTGAGACTGAAAATATGCATTGGATAAATTTGTTGAAAGTTGTGCATTAAGATCCATA AAGACAATTTTGCTGCAACTGCTTTCAGCTTTACAATTAGAAACACAAACCAGCAATGAGGTTTCAATATTGTCAATGTT CAAGTCAATTTGGTCAAATTGGGGGAAAGTGGATGCACTTCATGATTTGCAGAGAAATAATTCTGATGGGCTCTGAAGAA AAGATCAGAAAAGCTAAACTTCTATGCCCTGTGGCAGCAGCCACAATTACCCATATAGTTGTCTATCATCCCCGCACCCT ATGCCTTCCCTCATATTCACGCCCCCTCTACTCATTCCTGCATCCCCAGTTCTCTCCCTTGGATCTCATTTGTTAGGATC CAGCATAATCAAATTCCCTTGCTCCGGTTCTCTCTTTTCGGTGCACTCCCCATAGGAGGCCCATCAAATTCATGAATCAT AAACTTCTCAAACTATGCACCTTCCTCGCGTGGTCAACATCGATACAGTGAATCACCAAGAAATGTTCGAAGAAAATGGG ACACGCCAATACTCACCTAGAACTGTAAATAAAATTTCCATAGAAAAGCTGTTGCTTTGCTGTATGGAAAAGTTACATAC TGTTGCTGAACTAGAATTGCACATAATGTGAGGCATTCAATTCTGTACCTTCAGATCCCATATCCTAATTTTCTGTCCCA CCATTTATATGCCACCTAGCCGGTCCCAAGCTCAGGTAAAGGAGGTGGGTTGTGGTAGACCTTTAGCAGCCAACAGTTAA TGGAAAACTAACTGATGTTTTTAATATGGACCACTTACATGCCACCTAGAGATTAGTGTGTCATTTATAGTTACACAATT TAGGTAAATACCACTGATGTTTACGACTTCAGGTATCATTTTTCATGGTTAGAGACTTAGAGTTAGGCTGGAAATGGGGA CAGGTGATCTCCATCCCTATGGTTATGATTGATTACCACTAAAAATTAAGGATTTCTGTCAATCATTTTTAGATGTGTCA TAATGATGTTGCTTGACATTATTTCCACCTGTTTTATTTGTTCTAAAGCTTTAAATATCTGCAAGGATAGAGAATAGATT TTAGCTTGTATCTACCAAACCATGCCTTTTATTTTTATGACCATTTAACTCTGCAGAGATGAACTTATCTGTCATGAGAA TATTTCAATAGCTAAACTTGCAACTTGCTTCTATTGATTTGTGAATACAGGGTTTTATGAGACTCGACTTGCTTATTACG CATGGCGGGGTGCCAAAGGATACCGCTTTTCTGCCATCCCTGATTATTAGAGCACTTTACTTCAGTTGTCTTGTGGATAA GGTTGCAGGTTCTGTTGAAGGAATAACCAATTTTCATATTTAAAGTGAATATTTAAAGCTACACTTCCTTTTCCATTTCT TCTATAGCTTCCACTTTCTTATAATGACAATCGCTGTCAATTATGTATGATTACTTATTAAACTATCCAGGGCTTAGATC AGAAAGAACTAGCTTGTATAATAGTTTTATGCGGTGGACCAACACAGTACACAATATAATTGCTATTTAGTTCACACGTT CATGTGAGGTGAGATATCAATCGAAATAATGGTAGAGGGAGAAATGTAAGAGAAATAAGATCTTCAATTTAATAATCTCA TTTTTAATTGTTTAGAATCTTAAACAGGATCAAAACCTCACATATTATATCTCTTCCTATCATATTTGCTTCTGGTTTAA TCTTAGTCTTTATCTGAACCAGATTGAACATCAGAAACCAACTAGAAATGAGGCTGAAAGTGAAAGGGTGATAGCGATTG TTGGCCTCTTATTTACTCAAACAAATAATCATATAACACAAAAATCAAATAAATGGTTTGCATTATTATTGTTCTCTCGA TCATTCATTTTACCAGACCATATGAATGCGAGCCACACGTTCACTTATGACTTCTCTGTGATAACGTGTGATGACTTTTT CCTTTTTCTGTATACACTTTTATATTCTATGATATATCCAAAATTGGAGGGGACATATCTCTTGAATTAATTCTCCAGCC ATTACGTCCCCATTGTCATATTCACTCAATCACAATTCTAGTAACTTGAGCCAAAATATATTAATAATGATAAATTGATA ATATCTCAGTCGTTGTGGGAATTTTTTTTCGTATTCTCTGG
CDS sequence (LotjaGi6g1v0318600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACTAGACGTGTTCGATACACCCCTCTTGCCACGGATGAGGATGATTATGTTGGTGATAGAAATAGACCATTTGA TCCTCGATTTGATTATACGCCAAAAGCCTTGGATAGAGTTCCCTGGAAATCCATTGCCCTTGCACTCTTCCTGTTATTTC TCGGTACAGGACTTCTGTTCCTTTCATACTTTATCTTCACTGGTCATATGGGGGGAGAACGTTCTCAAGCATATGGCCTA TTAGCCCTTGGGTTTCTTAGCTTTCTCCCAGGGTTTTATGAGACTCGACTTGCTTATTACGCATGGCGGGGTGCCAAAGG ATACCGCTTTTCTGCCATCCCTGATTATTAG
Protein sequence (LotjaGi6g1v0318600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATRRVRYTPLATDEDDYVGDRNRPFDPRFDYTPKALDRVPWKSIALALFLLFLGTGLLFLSYFIFTGHMGGERSQAYGL LALGFLSFLPGFYETRLAYYAWRGAKGYRFSAIPDY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 44 | 44 | - | – | |
| PANTHER | 3 | 116 | 114 | 2.6E-41 | – | |
| PANTHER | 3 | 116 | 114 | 2.6E-41 | – | |
| Pfam | 39 | 116 | 78 | 7.4E-29 | ||
| Phobius | 45 | 66 | 22 | - | – | |
| TMHMM | 45 | 67 | 23 | - | – | |
| Phobius | 67 | 77 | 11 | - | – | |
| TMHMM | 77 | 99 | 23 | - | – | |
| Phobius | 78 | 99 | 22 | - | – | |
| Phobius | 100 | 116 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0318600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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