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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0320400 |
| Transcript ID | LotjaGi6g1v0320400.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cellulose synthase; TAIR: AT4G18780.1 cellulose synthase family protein; Swiss-Prot: sp|Q8LPK5|CESA8_ARATH Cellulose synthase A catalytic subunit 8 [UDP]-forming]; TrEMBL-Plants: tr|A0A072V4N8|A0A072V4N8_MEDTR Cellulose synthase; Found in the gene: LotjaGi6g1v0320400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63696907..63702276) extracted from Lotus japonicus Gifu genome v1.2.
GATTTTTGGGACCAAAGGGAATTTTGAGGGAAAAGATTAACTTTGAGGTGGCAGATATTCTCTTCTTTGTTCTAGTTCTT ACTGCTAAGTTCAAATTTGCACTTACAACCTCTCCTTACATTATGTAGGATGTTGGAATCCATGCTAGGCATGTCAGTAC TGTTTCCACAGTGGACAGTGGTAAGGAAGAGACTTCAGACCACATTTTCTACTTCTAGTACAATTTCTATAGAAATTCTC ATTAATAGTCATAACACGGTTTCTTCTTGTAGAATTAAATGATGAATCTGGGAATCCAATCTGGAAAAATAGAGTTGAAA GCTGGAAGGAAAAGGATAAAAAGAAAAAGAAGAAAAAGGAAGCACCTAAGGCTGAAAATGAGATGCCAATTCCACCAGAA CAGCAGATGGAAGAAATGCAGTAAGTTCATTGAGAAATGTAACACATGCAAGACTGTTAATTGATGATGAATATTTTTCA TGAGCTTATTATTTTTGTTGGCTTTCCTCCATTGATTTAAAATCTGTCATACAAATTTAGTCACATTTATTCTGATGTAC ATGGCTACATGCTGCTGATATGTTTTGCAGGTCCACAGAGGCTGCTGCAGCTGAGCCACTTTCAGTCATTATTCCAATCT CAAAAACTAAACTCTCACCATACAGATTTGTTATAATCATGCGACTGATAATCTTGGGTCTCTTCTTCCATTATCGAGTT ACTCATCCTGTTGATAGTGCTTTTGGTCTCTGGTTGACATCTATCATCTGTGAGATCTGGTTTGCATTTTCATGGGTGTT AGATCAGTTCCCTAAATGGTCTCCCATCAATAGGGAAACTTTCATTGACAGGCTCTCTGCAAGGTAAATAATACACAAAG TTGCAAAGTATATGGTAACATTGTTCCTTGTACTTTAAACTTTGAGCTGAAAAATCATGTTGCAGTAGATAAGGTATGCC TCAGTATTTGTTTCTTTACATGTTCAGAATTTGTGAAAGGTAATGCATAAAAAATGTAATCAGTGGAGATCTTTTAACAA TTGAACTTAATACATGATAAAGTATTATCGTGCGTGATTGGATCAGCATTTGTCACAACCAATTTTAGTAAAATTGATTA TAGTAAAAGCAAGTTGAAAGTGAAGTGATTTATATTTAGGTACATTTATGAAAAAATTACTTTTTTAGGTAATGTTGTTA AACTCAGTTGTAAAATATTACAATTGATTACGTTCAACGCTAGCTTCTGCCAGAATTGATTTTGGGTCTAAAATCAATTC TCCAACATGACTCCAAAACATCAATATTTTCATCCAGAATTGGTTTTACTCTACCATAATTGATACTGGGGTTTCCAAGG GGAAACCTAATGTAATATTTAAATTGATTGAGAACTGATATTTAGTCTGCAATGTGTATTTTGCATGTTGAATGCTAACT CTATTGCCAATCCAGGTATGAACAAAACGTTGAACCCTCTCAGCTTGCTGCTGTGGATTTCTTCGTCAGTACAGTTGATC CTCTGAAAGAACCGCCATTGATCACGGCTAATACAGTTCTTTCTATCCTTGCTGTGGACTACCCTGTGGACAAAGTATCC TGTTATGTTTCAGATGATGGTGCTGCAATGCTGTCATTTGAATCCCTTGTGGAGACAGCTGACTTTGCAAGAAGGTGGGT TCCATTCTGCAAAAAGTTTTCAATTGAACCGCGAGCACCTGAATTTTACTTCTCTCAGAAGATTGACTACCTTAAAGACA AAGTACAACCTTCTTTTGTGAAGGAACGTCGAGCTATGAAGGTAAGCATCTGAAGCTTCCTATCTATGATGTCAAAGACA GGATAATCTTGATATTTGAATACATCTGTTTTACTATACTCACCGCCTCTTCATGATTATCTTTCATTTGTTTCAGAGAG ACTATGAAGAGTTTAAAGTACGAATGAATGCCTTGGTAGCGAAGGCTCTGAAAACACCAGAAGAAGGGTGGACTATGCAA GATGGAACATCTTGGCCAGGAAATAATACACGCGATCATCCTGGCATGATTCAGGTATATCCATTCACTTTGTGTGTAAT CAAATCTAAATGCTGATAGGCATTGTTAGATGCCTAGTTTCTGCAACTTGTCTACAGAGTTATTGAAAGGACCAAATATT GAGGCAGCACGTGCTTAGAATTTTAATGGAATGCATTATAAGTTTTAATTATCTATTTTAATTAATAACATATAATGTCA CCAAATTAAGCCTTTGTGTTCCTTTCTTCAATTTCCACAATATTTGTTCTTACTGTTTCCTCCATTATAAATGACTGCTC CATCTGAAGATTCTATACCTTCATAAAAGCAGTTAGTGTTATGTGTGGGAAGTGAGTACCTTTTTTGTTTTTGTAAGATT GAATAGTTCTATTAATCAATTATTGGAATAAGTTCATTCTATACAATTCTTATGCTTCTCGTAGGCTGCGTAGCTGCAAA AACTGAATTTTCAAGTGATACTTGTGTTTACCATTGTCAGGTTTTCCTTGGACAAACTGGTGCCCAGGACCTAGAAGGAA ATGAACTTCCCAGGTTGGTCTATGTATCCAGAGAGAAAAGGCCAGGTTACCAACACCACAAAAAGGCTGGTGCTGAAAAT GCACTGGTATGGATAGATATTTTCAGTTTTTCACATTAACATTTTATATAATAAGGCCATTAAGATTTTATAATGCTTGA TGCTGACTTGGATTTATACAGGTGAGGGTATCAGCAGTTCTCACAAATGCTCCCTTCATTCTCAATCTTGACTGTGATCA TTATCTTAACAATAGCAAGGCTATTCGGGAAGCAATGTGTTTTCTGATGGATCCAGTAGTTGGTAGAGATGTGTGTTATG TGCAGTTCCCCCAAAGATTTGATGGTATTGATCGTAGTGATCGATATGCCAATCGCAACACAGTTTTCTTTGACGTAAGT TCAAATAAAAAATGAAGAATTTTACCACTTATACCTTATAGTTACTGTAGCTTCTGTGAATTAGAAATATTAACTATCAA ACAAGTACTCACAGCAAAGGTTTTCCTAGACATGAGATTGAAGAGGACTAGTTTTTTTAATCTTTGCATTTGTTTTTTTT GTGAATGATAGAGTCCAACTACTTTGGAATTTCCCTGCTTCTAGGTCCAGAAATTGTCCCATCATAACAATATTTACATT GTGATGTATATAGTGCATGCAGTGCTGAAACTTTTTAACAACTAAGAAGTAAAAATCACGGACACTACCATTATAACATG TTTGGATCAACTTCTATTTCCTTTGAATCAATTCTGACACCCAGAAGCTTCTCTCCGTAATTGATTTTGGTTTTAGAATT AATTGTTGAAGGATTTCCAAACATGCACTTACTGTAGTTTCCGACCCTGATAGGTTAACATGAAAGGACTTGATGGCATT CAAGGACCTATGTATGTGGGGACTGGATGTGTTTTCAATAGACAAGCACTTTATGGCTACAGCCCACCTTCTATGCCCAG CTTACCAAAATCTTCATCATGCTGTTGCTGCCGCCCAAAGAAGCCTACCAAAGATGTCTCAGAGCTTTATAGAGATGCAA AGAGGGAAGAGCTTGATGCTGCTATTTTTAATCTTAGAGAGATTGAAAGTAAGCACAGTTAACTTTGTCAGCCAGTTTTA CTTAAACATATAGCAGATTCTTCAATGAGGAATATTGTTTTGGTTTCTTTTCTTTCTTGCAGATTATGATGAGTATGAGA GGTCAATGCTGATTTCACAAATGAGCTTTGAGAAAACATTTGGTTTGTCCACTGTTTTCATTGAATCTACACTAATGGAG TATGGAGGGGTGCCTGAATCTGTGGATCCCTCAATGCTGATCAAGGAGGCCATTCATGTAATTAGTTGTGGATATGAAGA GAAGACTGCATGGGGAAAAGAGGTTAGGCTTTTATGTTCATGGTGTTCTTTAACACCTAATGCTCATAATCATGTTCTTT TATTGTAACATCATCTTGAGAATTTGGATCTCCTTTTCTATTTTCAAATTACACTATCGAATACCAATTAATCAAATGGC ATCTTATCTATTCAGATTGGTTGGATCTATGGTTCAGTGACTGAGGATATCTTAACCGGGTTCAAGATGCACTGCAGAGG ATGGAGGTCAATTTACTGCATGCCCTTAAGGCCTGCATTCAAAGGGTCCGCGCCAATCAACCTTTCTGATCGGTTGCACC AAGTTCTTCGATGGGCCCTCGGATCAGTTGAAATTTTCTTTAGCAGACACTGCCCCCTATGGTATGGTTTTGCAGGCGGT CGCCTGAGCTGGCTGCAGAGACTGGCTTACATCAACACCATTGTCTACCCTTTCACATCTCTTCCTCTAGTTGCATATTG TTCTTTGCCTGCAATTTGCCTTCTTACAGGAAAATTCATCATACCAACGGTAATTTCCTCATCGTTATCTTGGTCTTATC ATACAATTGTTATTAATTCACTCAATCCATACGGTAATTACAACAGATATAATATGGAATATGAATTTTGTGTTATTACA ATAGTAGCGTGTTTGGATTGATGGTGACACACAATTCAAAACATGATAACTCCAGAAGCTACACTTTGTAGCTAATCCAC CGAATTGATTAGGGGGATTTTCACGGCAGAACGAAACAGACTATATATATTCTAATGAAAACAATTTCAAGCAAATCAAT TGATGTCAGTATTTCACTACACTAAGTCCTTGCATCACATTGTTGTTGCTGATTTGATGCAGCTTTCAAACCTTGCAAGT GTTCTCTTTCTTGGACTTTTCATTTCCATTATAGCCACTAGTGTGCTTGAGCTGCGGTGGAGCGGTGTAACCATCCAAGA TTTGTGGCGAAACGAGCAGTTCTGGGTGATTGGAGGTGTTTCAGCTCATCTCTTCGCCGTCTTCCAAGGATTCCTAAAGA TGTTTGCAGGTGTTGACACCAACTTCACAGTCACTTCCAAATCTGCTGATGATGCAGAGTTTGGTGAACTATACATCATC AAATGGACTACACTTTTGATTCCTCCGACGACCCTTATCGTTGTTAACATGGTTGGTGTTGTTGCTGGATTTTCTGATGC ACTCAATGGAGGATATGAATCTTGGGGACCACTCATTGGAAAAGTTTTCTTTGCCTTCTGGGTGATTTTTCATCTCTATC CCTTCCTCAAAGGTCTCATGGGTCGCCAGAACCGTACTCCAACCGTGGTTATTCTGTGGTCAGTGCTTCTGGCCTCTGTC TTCTCCCTTGTTTGGGTTAAGATTGATCCATTTGTGAGTAAAGTTGACAGTGCAGCCATCTCTGGAACTTGCATTTCTAT TGATTGTTAA
CDS sequence (LotjaGi6g1v0320400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAATTCCACCAGAACAGCAGATGGAAGAAATGCAGTCCACAGAGGCTGCTGCAGCTGAGCCACTTTCAGTCATTAT TCCAATCTCAAAAACTAAACTCTCACCATACAGATTTGTTATAATCATGCGACTGATAATCTTGGGTCTCTTCTTCCATT ATCGAGTTACTCATCCTGTTGATAGTGCTTTTGGTCTCTGGTTGACATCTATCATCTGTGAGATCTGGTTTGCATTTTCA TGGGTGTTAGATCAGTTCCCTAAATGGTCTCCCATCAATAGGGAAACTTTCATTGACAGGCTCTCTGCAAGGTATGAACA AAACGTTGAACCCTCTCAGCTTGCTGCTGTGGATTTCTTCGTCAGTACAGTTGATCCTCTGAAAGAACCGCCATTGATCA CGGCTAATACAGTTCTTTCTATCCTTGCTGTGGACTACCCTGTGGACAAAGTATCCTGTTATGTTTCAGATGATGGTGCT GCAATGCTGTCATTTGAATCCCTTGTGGAGACAGCTGACTTTGCAAGAAGGTGGGTTCCATTCTGCAAAAAGTTTTCAAT TGAACCGCGAGCACCTGAATTTTACTTCTCTCAGAAGATTGACTACCTTAAAGACAAAGTACAACCTTCTTTTGTGAAGG AACGTCGAGCTATGAAGAGAGACTATGAAGAGTTTAAAGTACGAATGAATGCCTTGGTAGCGAAGGCTCTGAAAACACCA GAAGAAGGGTGGACTATGCAAGATGGAACATCTTGGCCAGGAAATAATACACGCGATCATCCTGGCATGATTCAGGTTTT CCTTGGACAAACTGGTGCCCAGGACCTAGAAGGAAATGAACTTCCCAGGTTGGTCTATGTATCCAGAGAGAAAAGGCCAG GTTACCAACACCACAAAAAGGCTGGTGCTGAAAATGCACTGGTGAGGGTATCAGCAGTTCTCACAAATGCTCCCTTCATT CTCAATCTTGACTGTGATCATTATCTTAACAATAGCAAGGCTATTCGGGAAGCAATGTGTTTTCTGATGGATCCAGTAGT TGGTAGAGATGTGTGTTATGTGCAGTTCCCCCAAAGATTTGATGGTATTGATCGTAGTGATCGATATGCCAATCGCAACA CAGTTTTCTTTGACGTTAACATGAAAGGACTTGATGGCATTCAAGGACCTATGTATGTGGGGACTGGATGTGTTTTCAAT AGACAAGCACTTTATGGCTACAGCCCACCTTCTATGCCCAGCTTACCAAAATCTTCATCATGCTGTTGCTGCCGCCCAAA GAAGCCTACCAAAGATGTCTCAGAGCTTTATAGAGATGCAAAGAGGGAAGAGCTTGATGCTGCTATTTTTAATCTTAGAG AGATTGAAAATTATGATGAGTATGAGAGGTCAATGCTGATTTCACAAATGAGCTTTGAGAAAACATTTGGTTTGTCCACT GTTTTCATTGAATCTACACTAATGGAGTATGGAGGGGTGCCTGAATCTGTGGATCCCTCAATGCTGATCAAGGAGGCCAT TCATGTAATTAGTTGTGGATATGAAGAGAAGACTGCATGGGGAAAAGAGATTGGTTGGATCTATGGTTCAGTGACTGAGG ATATCTTAACCGGGTTCAAGATGCACTGCAGAGGATGGAGGTCAATTTACTGCATGCCCTTAAGGCCTGCATTCAAAGGG TCCGCGCCAATCAACCTTTCTGATCGGTTGCACCAAGTTCTTCGATGGGCCCTCGGATCAGTTGAAATTTTCTTTAGCAG ACACTGCCCCCTATGGTATGGTTTTGCAGGCGGTCGCCTGAGCTGGCTGCAGAGACTGGCTTACATCAACACCATTGTCT ACCCTTTCACATCTCTTCCTCTAGTTGCATATTGTTCTTTGCCTGCAATTTGCCTTCTTACAGGAAAATTCATCATACCA ACGCTTTCAAACCTTGCAAGTGTTCTCTTTCTTGGACTTTTCATTTCCATTATAGCCACTAGTGTGCTTGAGCTGCGGTG GAGCGGTGTAACCATCCAAGATTTGTGGCGAAACGAGCAGTTCTGGGTGATTGGAGGTGTTTCAGCTCATCTCTTCGCCG TCTTCCAAGGATTCCTAAAGATGTTTGCAGGTGTTGACACCAACTTCACAGTCACTTCCAAATCTGCTGATGATGCAGAG TTTGGTGAACTATACATCATCAAATGGACTACACTTTTGATTCCTCCGACGACCCTTATCGTTGTTAACATGGTTGGTGT TGTTGCTGGATTTTCTGATGCACTCAATGGAGGATATGAATCTTGGGGACCACTCATTGGAAAAGTTTTCTTTGCCTTCT GGGTGATTTTTCATCTCTATCCCTTCCTCAAAGGTCTCATGGGTCGCCAGAACCGTACTCCAACCGTGGTTATTCTGTGG TCAGTGCTTCTGGCCTCTGTCTTCTCCCTTGTTTGGGTTAAGATTGATCCATTTGTGAGTAAAGTTGACAGTGCAGCCAT CTCTGGAACTTGCATTTCTATTGATTGTTAA
Protein sequence (LotjaGi6g1v0320400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPIPPEQQMEEMQSTEAAAAEPLSVIIPISKTKLSPYRFVIIMRLIILGLFFHYRVTHPVDSAFGLWLTSIICEIWFAFS WVLDQFPKWSPINRETFIDRLSARYEQNVEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGA AMLSFESLVETADFARRWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEFKVRMNALVAKALKTP EEGWTMQDGTSWPGNNTRDHPGMIQVFLGQTGAQDLEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFI LNLDCDHYLNNSKAIREAMCFLMDPVVGRDVCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPMYVGTGCVFN RQALYGYSPPSMPSLPKSSSCCCCRPKKPTKDVSELYRDAKREELDAAIFNLREIENYDEYERSMLISQMSFEKTFGLST VFIESTLMEYGGVPESVDPSMLIKEAIHVISCGYEEKTAWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPLRPAFKG SAPINLSDRLHQVLRWALGSVEIFFSRHCPLWYGFAGGRLSWLQRLAYINTIVYPFTSLPLVAYCSLPAICLLTGKFIIP TLSNLASVLFLGLFISIIATSVLELRWSGVTIQDLWRNEQFWVIGGVSAHLFAVFQGFLKMFAGVDTNFTVTSKSADDAE FGELYIIKWTTLLIPPTTLIVVNMVGVVAGFSDALNGGYESWGPLIGKVFFAFWVIFHLYPFLKGLMGRQNRTPTVVILW SVLLASVFSLVWVKIDPFVSKVDSAAISGTCISIDC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 36 | 36 | - | – | |
| PANTHER | 4 | 835 | 832 | 0.0 | – | |
| PANTHER | 4 | 835 | 832 | 0.0 | – | |
| Phobius | 37 | 56 | 20 | - | – | |
| TMHMM | 40 | 57 | 18 | - | – | |
| Phobius | 57 | 61 | 5 | - | – | |
| Phobius | 62 | 83 | 22 | - | – | |
| TMHMM | 64 | 83 | 20 | - | – | |
| Phobius | 84 | 572 | 489 | - | – | |
| Pfam | 117 | 827 | 711 | 0.0 | ||
| SUPERFAMILY | 131 | 637 | 507 | 1.03E-9 | ||
| Gene3D | 247 | 407 | 161 | 5.4E-13 | ||
| Phobius | 573 | 593 | 21 | - | – | |
| Phobius | 594 | 612 | 19 | - | – | |
| TMHMM | 611 | 633 | 23 | - | – | |
| Phobius | 613 | 633 | 21 | - | – | |
| Phobius | 634 | 644 | 11 | - | – | |
| TMHMM | 645 | 667 | 23 | - | – | |
| Phobius | 645 | 663 | 19 | - | – | |
| Phobius | 664 | 682 | 19 | - | – | |
| TMHMM | 682 | 704 | 23 | - | – | |
| Phobius | 683 | 703 | 21 | - | – | |
| Phobius | 704 | 723 | 20 | - | – | |
| Phobius | 724 | 745 | 22 | - | – | |
| TMHMM | 724 | 746 | 23 | - | – | |
| Phobius | 746 | 764 | 19 | - | – | |
| TMHMM | 761 | 783 | 23 | - | – | |
| Phobius | 765 | 783 | 19 | - | – | |
| Phobius | 784 | 794 | 11 | - | – | |
| Phobius | 795 | 815 | 21 | - | – | |
| TMHMM | 796 | 813 | 18 | - | – | |
| Phobius | 816 | 836 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of LotjaGi6g1v0320400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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