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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0320400 |
| Transcript ID | LotjaGi6g1v0320400.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cellulose synthase; TAIR: AT4G18780.1 cellulose synthase family protein; Swiss-Prot: sp|Q8LPK5|CESA8_ARATH Cellulose synthase A catalytic subunit 8 [UDP]-forming]; TrEMBL-Plants: tr|A0A1J7HMN5|A0A1J7HMN5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0320400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63701002..63702500) extracted from Lotus japonicus Gifu genome v1.2.
ATTGGTTGGATCTATGGTTCAGTGACTGAGGATATCTTAACCGGGTTCAAGATGCACTGCAGAGGATGGAGGTCAATTTA CTGCATGCCCTTAAGGCCTGCATTCAAAGGGTCCGCGCCAATCAACCTTTCTGATCGGTTGCACCAAGTTCTTCGATGGG CCCTCGGATCAGTTGAAATTTTCTTTAGCAGACACTGCCCCCTATGGTATGGTTTTGCAGGCGGTCGCCTGAGCTGGCTG CAGAGACTGGCTTACATCAACACCATTGTCTACCCTTTCACATCTCTTCCTCTAGTTGCATATTGTTCTTTGCCTGCAAT TTGCCTTCTTACAGGAAAATTCATCATACCAACGGTAATTTCCTCATCGTTATCTTGGTCTTATCATACAATTGTTATTA ATTCACTCAATCCATACGGTAATTACAACAGATATAATATGGAATATGAATTTTGTGTTATTACAATAGTAGCGTGTTTG GATTGATGGTGACACACAATTCAAAACATGATAACTCCAGAAGCTACACTTTGTAGCTAATCCACCGAATTGATTAGGGG GATTTTCACGGCAGAACGAAACAGACTATATATATTCTAATGAAAACAATTTCAAGCAAATCAATTGATGTCAGTATTTC ACTACACTAAGTCCTTGCATCACATTGTTGTTGCTGATTTGATGCAGCTTTCAAACCTTGCAAGTGTTCTCTTTCTTGGA CTTTTCATTTCCATTATAGCCACTAGTGTGCTTGAGCTGCGGTGGAGCGGTGTAACCATCCAAGATTTGTGGCGAAACGA GCAGTTCTGGGTGATTGGAGGTGTTTCAGCTCATCTCTTCGCCGTCTTCCAAGGATTCCTAAAGATGTTTGCAGGTGTTG ACACCAACTTCACAGTCACTTCCAAATCTGCTGATGATGCAGAGTTTGGTGAACTATACATCATCAAATGGACTACACTT TTGATTCCTCCGACGACCCTTATCGTTGTTAACATGGTTGGTGTTGTTGCTGGATTTTCTGATGCACTCAATGGAGGATA TGAATCTTGGGGACCACTCATTGGAAAAGTTTTCTTTGCCTTCTGGGTGATTTTTCATCTCTATCCCTTCCTCAAAGGTC TCATGGGTCGCCAGAACCGTACTCCAACCGTGGTTATTCTGTGGTCAGTGCTTCTGGCCTCTGTCTTCTCCCTTGTTTGG GTTAAGATTGATCCATTTGTGAGTAAAGTTGACAGTGCAGCCATCTCTGGAACTTGCATTTCTATTGATTGTTAAGTCAC AACAACGATGCTTATCAAAAAGTTTTGATCATTATGTAAAAGATATGGATCATGATGATTCAAGTCATAAGCATTATTAG TTCTTTGTTGAAATGTGTAAGCATTTTGAAGTGAGGTTGTGTACTTCTTCTTTACCATGCTTTGGATGAATTTAATTTCT TGTGTAAAGATCAAACATTGACTAGTTATATCGATATAGTGATTTTTCTTTCCATTTAG
CDS sequence (LotjaGi6g1v0320400.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACTGCAGAGGATGGAGGTCAATTTACTGCATGCCCTTAAGGCCTGCATTCAAAGGGTCCGCGCCAATCAACCTTTC TGATCGGTTGCACCAAGTTCTTCGATGGGCCCTCGGATCAGTTGAAATTTTCTTTAGCAGACACTGCCCCCTATGGTATG GTTTTGCAGGCGGTCGCCTGAGCTGGCTGCAGAGACTGGCTTACATCAACACCATTGTCTACCCTTTCACATCTCTTCCT CTAGTTGCATATTGTTCTTTGCCTGCAATTTGCCTTCTTACAGGAAAATTCATCATACCAACGCTTTCAAACCTTGCAAG TGTTCTCTTTCTTGGACTTTTCATTTCCATTATAGCCACTAGTGTGCTTGAGCTGCGGTGGAGCGGTGTAACCATCCAAG ATTTGTGGCGAAACGAGCAGTTCTGGGTGATTGGAGGTGTTTCAGCTCATCTCTTCGCCGTCTTCCAAGGATTCCTAAAG ATGTTTGCAGGTGTTGACACCAACTTCACAGTCACTTCCAAATCTGCTGATGATGCAGAGTTTGGTGAACTATACATCAT CAAATGGACTACACTTTTGATTCCTCCGACGACCCTTATCGTTGTTAACATGGTTGGTGTTGTTGCTGGATTTTCTGATG CACTCAATGGAGGATATGAATCTTGGGGACCACTCATTGGAAAAGTTTTCTTTGCCTTCTGGGTGATTTTTCATCTCTAT CCCTTCCTCAAAGGTCTCATGGGTCGCCAGAACCGTACTCCAACCGTGGTTATTCTGTGGTCAGTGCTTCTGGCCTCTGT CTTCTCCCTTGTTTGGGTTAAGATTGATCCATTTGTGAGTAAAGTTGACATGATTTTTCTTTCCATTTAG
Protein sequence (LotjaGi6g1v0320400.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHCRGWRSIYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFFSRHCPLWYGFAGGRLSWLQRLAYINTIVYPFTSLP LVAYCSLPAICLLTGKFIIPTLSNLASVLFLGLFISIIATSVLELRWSGVTIQDLWRNEQFWVIGGVSAHLFAVFQGFLK MFAGVDTNFTVTSKSADDAEFGELYIIKWTTLLIPPTTLIVVNMVGVVAGFSDALNGGYESWGPLIGKVFFAFWVIFHLY PFLKGLMGRQNRTPTVVILWSVLLASVFSLVWVKIDPFVSKVDMIFLSI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 284 | 284 | 5.4E-156 | ||
| Phobius | 1 | 71 | 71 | - | – | |
| PANTHER | 1 | 284 | 284 | 4.6E-196 | – | |
| PANTHER | 1 | 284 | 284 | 4.6E-196 | – | |
| TMHMM | 34 | 56 | 23 | - | – | |
| TMHMM | 71 | 93 | 23 | - | – | |
| Phobius | 72 | 93 | 22 | - | – | |
| Phobius | 94 | 104 | 11 | - | – | |
| Phobius | 105 | 123 | 19 | - | – | |
| TMHMM | 105 | 127 | 23 | - | – | |
| Phobius | 124 | 142 | 19 | - | – | |
| TMHMM | 142 | 164 | 23 | - | – | |
| Phobius | 143 | 163 | 21 | - | – | |
| Phobius | 164 | 183 | 20 | - | – | |
| Phobius | 184 | 205 | 22 | - | – | |
| TMHMM | 184 | 206 | 23 | - | – | |
| Phobius | 206 | 224 | 19 | - | – | |
| TMHMM | 221 | 243 | 23 | - | – | |
| Phobius | 225 | 243 | 19 | - | – | |
| Phobius | 244 | 254 | 11 | - | – | |
| Phobius | 255 | 275 | 21 | - | – | |
| TMHMM | 256 | 273 | 18 | - | – | |
| Phobius | 276 | 289 | 14 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of LotjaGi6g1v0320400.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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