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LotjaGi6g1v0322000.1

Overview

Field	Value
Gene ID	LotjaGi6g1v0322000
Transcript ID	LotjaGi6g1v0322000.1
Lotus japonicus genome version	Gifu v1.2
Description	Transcription factor-related, putative; TAIR: AT4G18650.1 transcription factor-like protein; Swiss-Prot: sp\|Q84JC2\|DOGL4_ARATH Protein DOG1-like 4; TrEMBL-Plants: tr\|I1M1S8\|I1M1S8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0322000
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr6:63818260..63819469) extracted from Lotus japonicus Gifu genome v1.2.

CCACCCTCTCTTCTTCTGCAAAGCGTCAAAAACTAAAACCATTTCTTCACAAAACGCACTAGTAGGCAATTGCTGCGCGT AAGCCATGCACTAATTGACCAGAAACACTGTTTAATACCGTGTCCTTCTCTCCCTTTTCCATCTGGTAACCTCTTAGCTT CAATTCCACCTTAAAACGCAACACACATTCTCACAATCAAACCACATTCATTCATTCAAACTCCTCTGTTTCTCACTCTG TTCTGTGTATGTAACAATGAAGAATTATGACCCGGTGAGGGAGAATTTCTCTGAATTCTACGAGAAATGGGTGTGGAACC TGGAGGAGATTTTCCACCAGCTTCTTGAGGTGTCAAGGAAGAGAAATGAGATGAGTGAAGCAGAGATGCAAGCTTTGGTG AACAGAGTAACTTCCCATGTGAAAGAATACTACACTGTGAAATGGGGTTTAGCTCATCAAGATGTTCTGGTTTTCTTCTC ACCAACGTGGCTGAGTCCTCTGGAGAATGCGTACAGCTGGATCACTGGTTGGAAGCCCTCTGCAATTTTCAGGCTTCTGT TGAAGAAGGGTCATGATCAGAAAATCATGTTTGAGATGACAGAGGAGCAGCAGAGGAAGGTGGAGGGGCTGAGAGTGAGG ATTAAGATGGAGGAGGAGAAGGTGGAGAGGGAGATGGAGCGGCACCAGGTGGCGTTGGCTGATCCCAAGATGTTGGAATT AGCAAAGCTTTGTAGCAGAGCGAGGAATGGTGGTGGTGGTGGTGGTGATGATGCAGTTGCGAGGGTTGATGGGTATGTGG AGGTGGCGTTGAAGGGTGTGGTTGCAGGGTTGGAGAAGGTGATGAAGGCTTCTGATTGTGTGAGGCTGAAGGCACTGAAA GGGGTGTTGGATTTGCTTGGTCCAGTGCAGTGTGTGGAGTTTTTGGCTGCTTTCATAGCTATGCAGCTGAGGCTGAGGCA ATGTGGGAAGAAGAGACCAGAGATGGATGCAGGGTCCATCAAGTGATGAACAATGTAGAAAAAAATTAAGAATTTTCAGC TTTAGTTATTAGGATGTTTTGTACTTCAATCGATCATTTTGATTAGCACCAAGAAAGATTCATAGTTGCTTAGTTTAAAG CTATTTCTCTTGTTGGTTTCAATTAATGTAGTTGAGTCGATTGCCTAAAATGTTCATTTCTTTATCGCTTACATGATTTG ATTTCTTCCA

Download Genomic Sequence

CDS sequence (LotjaGi6g1v0322000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGAATTATGACCCGGTGAGGGAGAATTTCTCTGAATTCTACGAGAAATGGGTGTGGAACCTGGAGGAGATTTTCCA CCAGCTTCTTGAGGTGTCAAGGAAGAGAAATGAGATGAGTGAAGCAGAGATGCAAGCTTTGGTGAACAGAGTAACTTCCC ATGTGAAAGAATACTACACTGTGAAATGGGGTTTAGCTCATCAAGATGTTCTGGTTTTCTTCTCACCAACGTGGCTGAGT CCTCTGGAGAATGCGTACAGCTGGATCACTGGTTGGAAGCCCTCTGCAATTTTCAGGCTTCTGTTGAAGAAGGGTCATGA TCAGAAAATCATGTTTGAGATGACAGAGGAGCAGCAGAGGAAGGTGGAGGGGCTGAGAGTGAGGATTAAGATGGAGGAGG AGAAGGTGGAGAGGGAGATGGAGCGGCACCAGGTGGCGTTGGCTGATCCCAAGATGTTGGAATTAGCAAAGCTTTGTAGC AGAGCGAGGAATGGTGGTGGTGGTGGTGGTGATGATGCAGTTGCGAGGGTTGATGGGTATGTGGAGGTGGCGTTGAAGGG TGTGGTTGCAGGGTTGGAGAAGGTGATGAAGGCTTCTGATTGTGTGAGGCTGAAGGCACTGAAAGGGGTGTTGGATTTGC TTGGTCCAGTGCAGTGTGTGGAGTTTTTGGCTGCTTTCATAGCTATGCAGCTGAGGCTGAGGCAATGTGGGAAGAAGAGA CCAGAGATGGATGCAGGGTCCATCAAGTGA

Download CDS Sequence

Protein sequence (LotjaGi6g1v0322000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKNYDPVRENFSEFYEKWVWNLEEIFHQLLEVSRKRNEMSEAEMQALVNRVTSHVKEYYTVKWGLAHQDVLVFFSPTWLS PLENAYSWITGWKPSAIFRLLLKKGHDQKIMFEMTEEQQRKVEGLRVRIKMEEEKVEREMERHQVALADPKMLELAKLCS RARNGGGGGGDDAVARVDGYVEVALKGVVAGLEKVMKASDCVRLKALKGVLDLLGPVQCVEFLAAFIAMQLRLRQCGKKR PEMDAGSIK

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR46354 View details on PTHR46354 Search for proteins/transripts with this domain View external data on PTHR46354	6	243	238	2.1E-104	–
PANTHER	PTHR46354:SF2 View details on PTHR46354:SF2 Search for proteins/transripts with this domain View external data on PTHR46354:SF2	6	243	238	2.1E-104	–
ProSiteProfiles	PS51806 View details on PS51806 Search for proteins/transripts with this domain View external data on PS51806	8	243	236	26.885	IPR025422 Show description in modal box View details on IPR025422 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	30	50	21	-	–
Pfam	PF14144 View details on PF14144 Search for proteins/transripts with this domain View external data on PF14144	35	102	68	4.3E-23	IPR025422 Show description in modal box View details on IPR025422 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	115	142	28	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0006351 View details of GO:0006351 AmiGO InterPro QuickGO	Biological process	Transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.	Subterm of View details of GO:0034645 View details of GO:0097659 Part of View details of GO:0010467
GO:0043565 View details of GO:0043565 AmiGO InterPro QuickGO	Molecular function	Sequence-specific DNA binding	Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.	Subterm of View details of GO:0003677

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0322000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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