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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0324400 |
| Transcript ID | LotjaGi6g1v0324400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT1G29050.1 TRICHOME BIREFRINGENCE-LIKE 38; Swiss-Prot: sp|Q8VY22|TBL38_ARATH Protein trichome birefringence-like 38; TrEMBL-Plants: tr|I3SYA8|I3SYA8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0324400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63984986..63989879) extracted from Lotus japonicus Gifu genome v1.2.
CGAGATTAGGCACATAAATTGAATAACTTTTGTTTTTGTTTGCAAATGGTAAAGTGAATATTAAATTGAGTGCAATAGAT TCCATTTGGCCCGTGACAGTGTTAAGGGTAGAGAGAGACCAATGAAATGCAAAAGAAAGAACATTTCTTCAGCTTCCTCC GTGACTGTAGTAGTAGAATAACGTAGTGGTAGTAAAGTAACATCTGAGTTTCCCCATTAAAACCAAGCTCTTCAGTTTCA TAACCCCACATACCATTGACAATTCCACCCAAGATCCCATTATCAGCACCCACCATTGGAACCCACCGAGTACTCTTTTT TTCTTCCAGTTTCTCCTTCTATATATATATGACCCACACTAGTTTCATTCACTACCCATTCTCTCTCTCTTAAATCCCAG ATGGGTTTCAGTTTCAGGGTCATTGCTCTGTTTCTGATCTCTCTGTTTTGCCAAGCAAGTGCACAAAATTTCCACAATGT GACTGGCTTAAGAGGAAAAAAACCAGTAGTGAATGGAGGGTGCAATTTTTTCATAGGAACATGGGTTGTTGATCCTTCCA ACCATCTCTATGACTCTTCATCTTGCCCCTTCATTGATTCTGAGTTTAATTGCCAAAAGTATGGAAGACCTGACACTCAG TACCTCAAATATGCTTGGAAACCTGATTCATGTGCCTTACCCAGGTAATTTCCATGTTCATGTATCAATTTATTACCATT GGATCCAAACCAACATCAACTTGTTAATCACCATTGGATTTATTGTAGTGAATATAAAATTATTCATGTGATCTCATTTT ATGGATAATTAGTTCTTGACATGATATTAGAATATCTTTGATTAAACGGTCTACAGTAGTTCGATCCTTATCGTTTTACA TTACATACTAGGACTAGTAGTTAAACTCTTACCAAGTGTTTGATAAATTGTTTTTTTGTTAATGTGACTGCAATTATTCT GGTACAGGTTCGATGGGAAAGATTTTCTGAACAGGTGGAAGGGTAAGAAGATAATGTTTGTGGGTGATTCACTGAGTCTG AACATGTGGGAATCACTGGCTTGTATGATTCACGCGTCGGTGCCGAATGCAAAGACCAGCTTTTTGAGGAAAGAGTCACT GTCTACTGTGACGTTCCAGGTTTGCTTTTGTATTTTATATCTTTGTCTGCTTCTTGGTTTGGTAAATAAATCACCAGTGT TCACTGAATGCAAGCCTCACACGTTTGACTTCATTTTCATGTCTTTTGTTTGTTTGTTTCTGTGTATACTTTTTCATTTA TGGTTCATGTCCCTTGTTGGTTCTTCTATTTCTCTTTCTCCTACCCCAGCTATGTCATTTTTATCTCTAGCTGTTTTACA CTTTTACTAAGTTAAGTTGAGAAGCTATAATAAAGGATTGCTTACCAAAAAAAGAAGCTATAATAAAGGATTAAAGGAGT AGTAGAACTTTATCTCTCTAATCTAGACAGCATACCTTTGGGTAAGACAAGATTCCTTTTGCTGGGCCAGGAACAAACAG AGATTACAAAGTTAAATATGTTTTTTGATGTTAGTATTGATATGGCCTATGGGTAAATTGAATTTGGTTATTAAAAAAAC TTCTTAGTCTCCAACATTAAATATTGTAAAAAGATAATCCATGTCGTATTTTTGGCGACGGTTTTTGTGTATTAACGGTA AATTTTAATTGCCACAAATCATTTAGTTTTAGTGGCGGTTCATACCACAATAAAATGAGCTGAGTGTCTAATTTCATTCA TTTCATTAATATTGGGATTGAAAGCTATAATTTCTTTTTAAAAGAATCAAATTCAATTCATTCTTATTTTACACAAACTA AAAACATATTTAACCATAAAAATAGGCAAATAGCAATAAAAGTACTTATAGCCCAAAAGAAAACACTCACACCCTGCAAT AAGAAGACATAATTTCCAATATTTGGATTGAAGGAACCCAAAAGCTTACAGTTTACTAATGCAGTACTTAAGAGAAGGGG CCCACAAATTTTTTTGGAATAAAATAGTTATAATGAAATTTGGATTTATAAATTGCTATAAAATTTCCAGGTCACTCATT ATTAACCCAACCCTAATGGAATATCTGATTAAAAACTCTCACTTCCTCTCATTGAAGCTTATGGAATTGAGAATTGTTTC ATCAAAATTAAGCCAGAAAACAGAGGTTTCATATAGATGTAGACGAATTATGTCGACAAGATGTGAGGCAGGCCATGCCA ACTTGTGATTACAAGTTGGAGGCTGCTCACAATTATCAATCACAGAACATGGCACTTTTGTTTTCATATTTAAATACCAT TTATGGCATGTCAACATTGTCATACCACAAATTGTGCCTTGTTTGTGATAAAATCCAGCTTAATTTTTTTCATGCTAAAT GTGTATACTGTATATAATAAACAAACTTTCATTCTTAGTGGGTGTTAATGTCTATTTGAACTGAGTTCCTCTTGTAACCA AAAAATGTCTATTTACCCTTATGTTAACTGATATTCAAACTTTGCTCTATTGTTATATCGTATTTATATTTTTTAACTGC TGACTTAATTTTAATTTGCAGCTAATTTTATTCTATCCTAATCACTTTAGAATTATAATAATATTTATCATTATTAACAT ATGATGGTTTTTTTTGAAAGACATATGATGGTTAATGAGTAATAGTTTGTTCACCATTGAAATACACTCCCACCTTTAAT TAGGTACTTACTAATTATCAATGATAAAAAATTGTAAGCATATAGGGCAATGATAGCATTATAATACTATTTTTTCTGAT AGTGATCTTGACAGAGCAGGGCATGTTTGATTCATTGATTGTCCTGCACGTTAATATTTTATGCACACAAATACATGTTT CTGCTTTTGAAAATCACGTTTCTAAAAAAAACACTTAATTGTCTGGTTTGTCATACATCTGGGGGTGTTGCAATTGAATT TCAGCCATCCAAAGTGGATTGATGGTGATGATGATGCCTGTGTTTGCAGGACTATGGAGTAACAATACAGCTATACCGCA CACCATATTTAGTGGACATCATTCGAGAAAATGTTGGTCGAGTGCTTACATTGGACTCCATTGTGGCTGGAAATGCTTGG AAAGGCATGGACATGTTGATTTTCAACTCATGGCATTGGTGGATCCACACTGGAAAATCTCAAGGGTATGCTTTTAATTA GTATGATAATCATCATTAATTGCCATAAATTAATACAACCACATTGTAAAGTTGTTTTGAGTTAGCACTACTATAAGTGT TAAATTATTCATTCCCTGTCCCTTTGTTTTGATTGTGATATTCAGATGGGACTACATCAGAGATGGACCCAATCTGGTGA AGAACATGGACCGTTTGGAGGCATACACTAAGGGATTGACCACTTGGGCTAGATGGGTTGATCTCAATGTTGATCCCTCC AAAACTAAAGTCTTCTTTCAAGGCATTTCCCCTACTCATTATCAGTAAGCAACTCCTACTCTCATCTCTTTCTTGTGTGC ATTTAAATGAGTTTGATTCAATTGAATATTAAAATGAAGACCTAAAACTTAAATTGTATGTAATGGATAACAACGCATGC TTAGCTCAAGTGATACATGCTTCATTACCATAAGCAAGACCTCGAGTTTGAGTTTTGTATATGGAAAAAACATGTGGCCT TGAAGAACTAGCCCCATTTTGATATGGATGCTCCCGCTTCGAATAGGATTGCCTCCCGTGCTGGATGTCTCACTTATACA AAACAAATTGTATGTAATGGATATCTTTCAAAACTATCAACAAACAATTGAGAAATTATACTAAAAATTGGTTAGAAGTT GGAAGCAATTAATAGATGCAACAATCCAGAAAATAAACTGAAACTTAATGTTATGATATCTGTTTGACTCAAACAGAGGC AAGGAGTGGAATCAACCTAAGAGAAGCTGTAGTGGACAACTTGAACCATTAGCTGGTTCAACATATCCAGCAGGTCTACC TCAAGCAGCTAACATCCTGAACAGTGTGTTAAAGAAGATGAATAATCCAGTTTATCTGCTTGACATTACACTCCTTTCGC AACTAAGGAAAGATGCACACCCTTCTACCTACGGCGAGGATCACTCTGGCAATGACTGCAGCCACTGGTGCCTGCCAGGG TTACCTGATACATGGAACCAGCTCCTGTACGCAGCTCTTACCAACAATTGATCCTGTAATTTCTTCATCCCTTGGTTATG TGTTCTGTTGGTGACTTCAAAATTTGTACATTACTTGCAAGGCAGAGATGCTAACCAGGGGTGAAAGTCGATTGTAAAAT TATATGATTCTTGGATAATATACAAAAAAAAGTTTGTCAGAGAGATCAAAACTCTTACATATCAAGAAATGTACTTTACA AGAGTATAAACTAATTTTATTGGATCACAAAATGATGTTGAACTTTACCATAATTGATGCACAGATAATGTAAGTTCCAT AATTGTGAACAGCTACAAGGCTGATTCTATTAGTGAAACTTCCTTTCCTCCCAAGAAAGAAGGAATTCTGCTAGACTGTC ATTGATCATTTTTGGCTTAAATGCATTTTGTGCCCCTGATGTTTTAGGGGCGTGCAAATGACACCCTTCTTCTAATTTTG TCAACGTTTGTACCCTCAATGTTCTGAGAAAGTATAGCGAATGCCCCTCCGTCAAATTGACGTTAAAAAACTAACGGAGG GGCTGACGTGACTTTTCTTTTTATTTCCTCAAATGACACGTCATTAAATAAAAATCAGAAACTTAAAAAGGGGTGGGGGA GATTCGAACCCAAGACATGAAAGTGGCAAAACACACACTTTACCAGTTAAGCTACACAAACAATTAGTAATATTATGAAC AAAGATTTATTTAT
CDS sequence (LotjaGi6g1v0324400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTTCAGTTTCAGGGTCATTGCTCTGTTTCTGATCTCTCTGTTTTGCCAAGCAAGTGCACAAAATTTCCACAATGT GACTGGCTTAAGAGGAAAAAAACCAGTAGTGAATGGAGGGTGCAATTTTTTCATAGGAACATGGGTTGTTGATCCTTCCA ACCATCTCTATGACTCTTCATCTTGCCCCTTCATTGATTCTGAGTTTAATTGCCAAAAGTATGGAAGACCTGACACTCAG TACCTCAAATATGCTTGGAAACCTGATTCATGTGCCTTACCCAGGTTCGATGGGAAAGATTTTCTGAACAGGTGGAAGGG TAAGAAGATAATGTTTGTGGGTGATTCACTGAGTCTGAACATGTGGGAATCACTGGCTTGTATGATTCACGCGTCGGTGC CGAATGCAAAGACCAGCTTTTTGAGGAAAGAGTCACTGTCTACTGTGACGTTCCAGGACTATGGAGTAACAATACAGCTA TACCGCACACCATATTTAGTGGACATCATTCGAGAAAATGTTGGTCGAGTGCTTACATTGGACTCCATTGTGGCTGGAAA TGCTTGGAAAGGCATGGACATGTTGATTTTCAACTCATGGCATTGGTGGATCCACACTGGAAAATCTCAAGGATGGGACT ACATCAGAGATGGACCCAATCTGGTGAAGAACATGGACCGTTTGGAGGCATACACTAAGGGATTGACCACTTGGGCTAGA TGGGTTGATCTCAATGTTGATCCCTCCAAAACTAAAGTCTTCTTTCAAGGCATTTCCCCTACTCATTATCAAGGCAAGGA GTGGAATCAACCTAAGAGAAGCTGTAGTGGACAACTTGAACCATTAGCTGGTTCAACATATCCAGCAGGTCTACCTCAAG CAGCTAACATCCTGAACAGTGTGTTAAAGAAGATGAATAATCCAGTTTATCTGCTTGACATTACACTCCTTTCGCAACTA AGGAAAGATGCACACCCTTCTACCTACGGCGAGGATCACTCTGGCAATGACTGCAGCCACTGGTGCCTGCCAGGGTTACC TGATACATGGAACCAGCTCCTGTACGCAGCTCTTACCAACAATTGA
Protein sequence (LotjaGi6g1v0324400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFSFRVIALFLISLFCQASAQNFHNVTGLRGKKPVVNGGCNFFIGTWVVDPSNHLYDSSSCPFIDSEFNCQKYGRPDTQ YLKYAWKPDSCALPRFDGKDFLNRWKGKKIMFVGDSLSLNMWESLACMIHASVPNAKTSFLRKESLSTVTFQDYGVTIQL YRTPYLVDIIRENVGRVLTLDSIVAGNAWKGMDMLIFNSWHWWIHTGKSQGWDYIRDGPNLVKNMDRLEAYTKGLTTWAR WVDLNVDPSKTKVFFQGISPTHYQGKEWNQPKRSCSGQLEPLAGSTYPAGLPQAANILNSVLKKMNNPVYLLDITLLSQL RKDAHPSTYGEDHSGNDCSHWCLPGLPDTWNQLLYAALTNN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| PANTHER | 6 | 359 | 354 | 1.1E-217 | ||
| PANTHER | 6 | 359 | 354 | 1.1E-217 | – | |
| Phobius | 7 | 17 | 11 | - | – | |
| Phobius | 18 | 21 | 4 | - | – | |
| Phobius | 22 | 361 | 340 | - | – | |
| Pfam | 40 | 91 | 52 | 4.7E-21 | ||
| Pfam | 93 | 356 | 264 | 1.5E-96 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0324400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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