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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0324400 |
| Transcript ID | LotjaGi6g1v0324400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT1G29050.1 TRICHOME BIREFRINGENCE-LIKE 38; Swiss-Prot: sp|Q8VY22|TBL38_ARATH Protein trichome birefringence-like 38; TrEMBL-Plants: tr|I3SYA8|I3SYA8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0324400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63985347..63989196) extracted from Lotus japonicus Gifu genome v1.2.
GTTTCATTCACTACCCATTCTCTCTCTCTTAAATCCCAGATGGGTTTCAGTTTCAGGGTCATTGCTCTGTTTCTGATCTC TCTGTTTTGCCAAGCAAGTGCACAAAATTTCCACAATGTGACTGGCTTAAGAGGAAAAAAACCAGTAGTGAATGGAGGGT GCAATTTTTTCATAGGAACATGGGTTGTTGATCCTTCCAACCATCTCTATGACTCTTCATCTTGCCCCTTCATTGATTCT GAGTTTAATTGCCAAAAGTATGGAAGACCTGACACTCAGTACCTCAAATATGCTTGGAAACCTGATTCATGTGCCTTACC CAGGTAATTTCCATGTTCATGTATCAATTTATTACCATTGGATCCAAACCAACATCAACTTGTTAATCACCATTGGATTT ATTGTAGTGAATATAAAATTATTCATGTGATCTCATTTTATGGATAATTAGTTCTTGACATGATATTAGAATATCTTTGA TTAAACGGTCTACAGTAGTTCGATCCTTATCGTTTTACATTACATACTAGGACTAGTAGTTAAACTCTTACCAAGTGTTT GATAAATTGTTTTTTTGTTAATGTGACTGCAATTATTCTGGTACAGGTTCGATGGGAAAGATTTTCTGAACAGGTGGAAG GGTAAGAAGATAATGTTTGTGGGTGATTCACTGAGTCTGAACATGTGGGAATCACTGGCTTGTATGATTCACGCGTCGGT GCCGAATGCAAAGACCAGCTTTTTGAGGAAAGAGTCACTGTCTACTGTGACGTTCCAGGTTTGCTTTTGTATTTTATATC TTTGTCTGCTTCTTGGTTTGGTAAATAAATCACCAGTGTTCACTGAATGCAAGCCTCACACGTTTGACTTCATTTTCATG TCTTTTGTTTGTTTGTTTCTGTGTATACTTTTTCATTTATGGTTCATGTCCCTTGTTGGTTCTTCTATTTCTCTTTCTCC TACCCCAGCTATGTCATTTTTATCTCTAGCTGTTTTACACTTTTACTAAGTTAAGTTGAGAAGCTATAATAAAGGATTGC TTACCAAAAAAAGAAGCTATAATAAAGGATTAAAGGAGTAGTAGAACTTTATCTCTCTAATCTAGACAGCATACCTTTGG GTAAGACAAGATTCCTTTTGCTGGGCCAGGAACAAACAGAGATTACAAAGTTAAATATGTTTTTTGATGTTAGTATTGAT ATGGCCTATGGGTAAATTGAATTTGGTTATTAAAAAAACTTCTTAGTCTCCAACATTAAATATTGTAAAAAGATAATCCA TGTCGTATTTTTGGCGACGGTTTTTGTGTATTAACGGTAAATTTTAATTGCCACAAATCATTTAGTTTTAGTGGCGGTTC ATACCACAATAAAATGAGCTGAGTGTCTAATTTCATTCATTTCATTAATATTGGGATTGAAAGCTATAATTTCTTTTTAA AAGAATCAAATTCAATTCATTCTTATTTTACACAAACTAAAAACATATTTAACCATAAAAATAGGCAAATAGCAATAAAA GTACTTATAGCCCAAAAGAAAACACTCACACCCTGCAATAAGAAGACATAATTTCCAATATTTGGATTGAAGGAACCCAA AAGCTTACAGTTTACTAATGCAGTACTTAAGAGAAGGGGCCCACAAATTTTTTTGGAATAAAATAGTTATAATGAAATTT GGATTTATAAATTGCTATAAAATTTCCAGGTCACTCATTATTAACCCAACCCTAATGGAATATCTGATTAAAAACTCTCA CTTCCTCTCATTGAAGCTTATGGAATTGAGAATTGTTTCATCAAAATTAAGCCAGAAAACAGAGGTTTCATATAGATGTA GACGAATTATGTCGACAAGATGTGAGGCAGGCCATGCCAACTTGTGATTACAAGTTGGAGGCTGCTCACAATTATCAATC ACAGAACATGGCACTTTTGTTTTCATATTTAAATACCATTTATGGCATGTCAACATTGTCATACCACAAATTGTGCCTTG TTTGTGATAAAATCCAGCTTAATTTTTTTCATGCTAAATGTGTATACTGTATATAATAAACAAACTTTCATTCTTAGTGG GTGTTAATGTCTATTTGAACTGAGTTCCTCTTGTAACCAAAAAATGTCTATTTACCCTTATGTTAACTGATATTCAAACT TTGCTCTATTGTTATATCGTATTTATATTTTTTAACTGCTGACTTAATTTTAATTTGCAGCTAATTTTATTCTATCCTAA TCACTTTAGAATTATAATAATATTTATCATTATTAACATATGATGGTTTTTTTTGAAAGACATATGATGGTTAATGAGTA ATAGTTTGTTCACCATTGAAATACACTCCCACCTTTAATTAGGTACTTACTAATTATCAATGATAAAAAATTGTAAGCAT ATAGGGCAATGATAGCATTATAATACTATTTTTTCTGATAGTGATCTTGACAGAGCAGGGCATGTTTGATTCATTGATTG TCCTGCACGTTAATATTTTATGCACACAAATACATGTTTCTGCTTTTGAAAATCACGTTTCTAAAAAAAACACTTAATTG TCTGGTTTGTCATACATCTGGGGGTGTTGCAATTGAATTTCAGCCATCCAAAGTGGATTGATGGTGATGATGATGCCTGT GTTTGCAGGACTATGGAGTAACAATACAGCTATACCGCACACCATATTTAGTGGACATCATTCGAGAAAATGTTGGTCGA GTGCTTACATTGGACTCCATTGTGGCTGGAAATGCTTGGAAAGGCATGGACATGTTGATTTTCAACTCATGGCATTGGTG GATCCACACTGGAAAATCTCAAGGGTATGCTTTTAATTAGTATGATAATCATCATTAATTGCCATAAATTAATACAACCA CATTGTAAAGTTGTTTTGAGTTAGCACTACTATAAGTGTTAAATTATTCATTCCCTGTCCCTTTGTTTTGATTGTGATAT TCAGATGGGACTACATCAGAGATGGACCCAATCTGGTGAAGAACATGGACCGTTTGGAGGCATACACTAAGGGATTGACC ACTTGGGCTAGATGGGTTGATCTCAATGTTGATCCCTCCAAAACTAAAGTCTTCTTTCAAGGCATTTCCCCTACTCATTA TCAGTAAGCAACTCCTACTCTCATCTCTTTCTTGTGTGCATTTAAATGAGTTTGATTCAATTGAATATTAAAATGAAGAC CTAAAACTTAAATTGTATGTAATGGATAACAACGCATGCTTAGCTCAAGTGATACATGCTTCATTACCATAAGCAAGACC TCGAGTTTGAGTTTTGTATATGGAAAAAACATGTGGCCTTGAAGAACTAGCCCCATTTTGATATGGATGCTCCCGCTTCG AATAGGATTGCCTCCCGTGCTGGATGTCTCACTTATACAAAACAAATTGTATGTAATGGATATCTTTCAAAACTATCAAC AAACAATTGAGAAATTATACTAAAAATTGGTTAGAAGTTGGAAGCAATTAATAGATGCAACAATCCAGAAAATAAACTGA AACTTAATGTTATGATATCTGTTTGACTCAAACAGAGGCAAGGAGTGGAATCAACCTAAGAGAAGCTGTAGTGGACAACT TGAACCATTAGCTGGTTCAACATATCCAGCAGGTCTACCTCAAGCAGCTAACATCCTGAACAGTGTGTTAAAGAAGATGA ATAATCCAGTTTATCTGCTTGACATTACACTCCTTTCGCAACTAAGGAAAGATGCACACCCTTCTACCTACGGCGAGGAT CACTCTGGCAATGACTGCAGCCACTGGTGCCTGCCAGGGTTACCTGATACATGGAACCAGCTCCTGTACGCAGCTCTTAC CAACAATTGA
CDS sequence (LotjaGi6g1v0324400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTTCAGTTTCAGGGTCATTGCTCTGTTTCTGATCTCTCTGTTTTGCCAAGCAAGTGCACAAAATTTCCACAATGT GACTGGCTTAAGAGGAAAAAAACCAGTAGTGAATGGAGGGTGCAATTTTTTCATAGGAACATGGGTTGTTGATCCTTCCA ACCATCTCTATGACTCTTCATCTTGCCCCTTCATTGATTCTGAGTTTAATTGCCAAAAGTATGGAAGACCTGACACTCAG TACCTCAAATATGCTTGGAAACCTGATTCATGTGCCTTACCCAGGTTCGATGGGAAAGATTTTCTGAACAGGTGGAAGGG TAAGAAGATAATGTTTGTGGGTGATTCACTGAGTCTGAACATGTGGGAATCACTGGCTTGTATGATTCACGCGTCGGACT ATGGAGTAACAATACAGCTATACCGCACACCATATTTAGTGGACATCATTCGAGAAAATGTTGGTCGAGTGCTTACATTG GACTCCATTGTGGCTGGAAATGCTTGGAAAGGCATGGACATGTTGATTTTCAACTCATGGCATTGGTGGATCCACACTGG AAAATCTCAAGGATGGGACTACATCAGAGATGGACCCAATCTGGTGAAGAACATGGACCGTTTGGAGGCATACACTAAGG GATTGACCACTTGGGCTAGATGGGTTGATCTCAATGTTGATCCCTCCAAAACTAAAGTCTTCTTTCAAGGCATTTCCCCT ACTCATTATCAAGGCAAGGAGTGGAATCAACCTAAGAGAAGCTGTAGTGGACAACTTGAACCATTAGCTGGTTCAACATA TCCAGCAGGTCTACCTCAAGCAGCTAACATCCTGAACAGTGTGTTAAAGAAGATGAATAATCCAGTTTATCTGCTTGACA TTACACTCCTTTCGCAACTAAGGAAAGATGCACACCCTTCTACCTACGGCGAGGATCACTCTGGCAATGACTGCAGCCAC TGGTGCCTGCCAGGGTTACCTGATACATGGAACCAGCTCCTGTACGCAGCTCTTACCAACAATTGA
Protein sequence (LotjaGi6g1v0324400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFSFRVIALFLISLFCQASAQNFHNVTGLRGKKPVVNGGCNFFIGTWVVDPSNHLYDSSSCPFIDSEFNCQKYGRPDTQ YLKYAWKPDSCALPRFDGKDFLNRWKGKKIMFVGDSLSLNMWESLACMIHASDYGVTIQLYRTPYLVDIIRENVGRVLTL DSIVAGNAWKGMDMLIFNSWHWWIHTGKSQGWDYIRDGPNLVKNMDRLEAYTKGLTTWARWVDLNVDPSKTKVFFQGISP THYQGKEWNQPKRSCSGQLEPLAGSTYPAGLPQAANILNSVLKKMNNPVYLLDITLLSQLRKDAHPSTYGEDHSGNDCSH WCLPGLPDTWNQLLYAALTNN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 6 | 132 | 127 | 1.2E-199 | – | |
| PANTHER | 6 | 132 | 127 | 1.2E-199 | ||
| Phobius | 7 | 17 | 11 | - | – | |
| Phobius | 18 | 21 | 4 | - | – | |
| Phobius | 22 | 341 | 320 | - | – | |
| Pfam | 40 | 91 | 52 | 4.3E-21 | ||
| Pfam | 130 | 336 | 207 | 8.5E-70 | ||
| PANTHER | 133 | 339 | 207 | 1.2E-199 | – | |
| PANTHER | 133 | 339 | 207 | 1.2E-199 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0324400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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