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LotjaGi6g1v0326400.1

Overview

Field Value
Gene ID LotjaGi6g1v0326400
Transcript ID LotjaGi6g1v0326400.1
Lotus japonicus genome version Gifu v1.2
Description Ethylene-responsive transcription factor, putative; TAIR: AT4G17500.1 ethylene responsive element binding factor 1; Swiss-Prot: sp|O04681|PTI5_SOLLC Pathogenesis-related genes transcriptional activator PTI5; TrEMBL-Plants: tr|G7IFJ0|G7IFJ0_MEDTR Ethylene response factor; Found in the gene: LotjaGi6g1v0326400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:64154497..64156059) extracted from Lotus japonicus Gifu genome v1.2.

AAATGATGCTAATTGTAACCCATACAGCACATAGCAATTAAAGCAAGTCCACTCTCTCCTGCCCCGTGTTCCTAAAACCT TCCTATCTACCACAAAATATTCTATGGCCCCATCTTTGCCCATTTATTCCACATCTATATGCAACTCTTCAACACAATCT TCCTCCCATTCCTTCAAAACAGAGAGATTCATACCCTCACACCAAACAAAACAGGGGAAGAAGCTAAACAGAGTAAATTT TCCAATAGAAGAAGAAGCAATTAGCAAAGCCAATTCATAAGCCATGGTTTTGATTTCTCAATCCCAAACAGAGTTACCCT TAAACGAGAATGATTCACAGGATATGGTCATATACCAAGTTCTCAATGAAGCCAGTGCTCTGAGCAACACTTTTCAGAAT CAGAGGCAGCAGCACCAAGGCTTAGAAGCCACAAGGAGCATCGCCAAGAAGCATTACAGAGGGGTGCGCCGCCGCCCCTG GGGGAAGTATGCGGCGGAGATTCGTGACTCGGCACGCCATGGAGCGAGGGTGTGGCTTGGCACGTTCCAAACTGCTGAAG AAGCTGCCATGGCTTATGACAGAGCAGCTTTCAGGATGAGAGGTTCCAAGGCGTTGCTCAATTTTCCAGCTGAAGTTGTT GCTGCTGCTGCTGCTGCTGCATCTTCCACGAAGATGGAGTTGAAGAAATTGAATAGCAATCATGATTCTGAATCAAGTGC TAGCAGCTCATGCATTTCCAATTCCAATTCAAATTCCAATTCCAATTGGGTGAATAGTACTCAGTTTGAAAGCACGAGTA GCACTGGAAGCTAAGCTTATTGGAGAAAAATGAAAATAGCTTCTTCTTCTGAAGAAGATTTTTTTTTCTGAAATGGGTTG GTTTGGTTTATTTGTATCTGTCTACGAAACAGGGGAAGATAAATTGAATTTGAATGTGATTCATACTAAGATTAGTTCAT AAATATGTTAAAAAGTTCACTGTATTTTTGTTATCCTTGTCGAATCTTTTTTTTGTTAGTGTTGTTGTTTGTGCGTCTCT TATGGGTCCCCTGAGTTTGTAAATGATGAGGCTAGTGTTCTACTACACAAAGTTATGGGAAAAGTGGATATAGTATCCAC AATGATGCAGCAATTTGAACTAAATCTCCATTTCCTTTTGGTGAAATATTCACGTTGGCAACAATGAGATTAACCCCTAG AGGTGAGATCACATTTACTAGGTATATCTGGTTCCAACAATTTTTTTTCCATGCACACCGTTCAAAGATCGAACGTAGAC AAGATGCTTAAGGAGTAGTTGTGCTTGACCTTGCTAAAATCTCCATTTCTGGATGACTTATAAAAGTTGTCTTTTCTAGA ATGGAGGCTATAAAGAAATTGGTATGCTCTGTTTCTCTAAATAACCAATTCACTATTCAGAACTAACTACTTTGTTGAGG ATGAATGGGTCATCATGCTTAATGTCTTCAATAAGGATGACAATATTGAACATCAAGTCAATATTTGATTATATTTGTAA ACATGAAAACCATTCTTATCTAATCTAGCAGTCTCAATTGTTT
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0326400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTTTGATTTCTCAATCCCAAACAGAGTTACCCTTAAACGAGAATGATTCACAGGATATGGTCATATACCAAGTTCT CAATGAAGCCAGTGCTCTGAGCAACACTTTTCAGAATCAGAGGCAGCAGCACCAAGGCTTAGAAGCCACAAGGAGCATCG CCAAGAAGCATTACAGAGGGGTGCGCCGCCGCCCCTGGGGGAAGTATGCGGCGGAGATTCGTGACTCGGCACGCCATGGA GCGAGGGTGTGGCTTGGCACGTTCCAAACTGCTGAAGAAGCTGCCATGGCTTATGACAGAGCAGCTTTCAGGATGAGAGG TTCCAAGGCGTTGCTCAATTTTCCAGCTGAAGTTGTTGCTGCTGCTGCTGCTGCTGCATCTTCCACGAAGATGGAGTTGA AGAAATTGAATAGCAATCATGATTCTGAATCAAGTGCTAGCAGCTCATGCATTTCCAATTCCAATTCAAATTCCAATTCC AATTGGGTGAATAGTACTCAGTTTGAAAGCACGAGTAGCACTGGAAGCTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0326400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVLISQSQTELPLNENDSQDMVIYQVLNEASALSNTFQNQRQQHQGLEATRSIAKKHYRGVRRRPWGKYAAEIRDSARHG ARVWLGTFQTAEEAAMAYDRAAFRMRGSKALLNFPAEVVAAAAAAASSTKMELKKLNSNHDSESSASSSCISNSNSNSNS NWVNSTQFESTSSTGS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31190:SF145
2 175 174 1.7E-78 –
PANTHER
PTHR31190
2 175 174 1.7E-78 –
CDD
cd00018
56 116 61 6.82762E-32
IPR001471
Gene3D
G3DSA:3.30.730.10
56 118 63 6.9E-32
IPR036955
ProSiteProfiles
PS51032
57 115 59 23.709
IPR001471
SMART
SM00380
57 121 65 1.4E-36
IPR001471
SUPERFAMILY
SSF54171
57 117 61 1.44E-23
IPR016177
Pfam
PF00847
57 107 51 1.0E-13
IPR001471
PRINTS
PR00367
58 69 12 2.0E-11
IPR001471
PRINTS
PR00367
81 97 17 2.0E-11
IPR001471
MobiDBLite
mobidb-lite
135 176 42 - –
MobiDBLite
mobidb-lite
140 176 37 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0326400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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