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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0327300 |
| Transcript ID | LotjaGi6g1v0327300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transmembrane protein, putative (Protein of unknown function, DUF599); TAIR: AT5G46060.1 spastin, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|Q9LPZ3|Y1141_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410; TrEMBL-Plants: tr|I3SHH2|I3SHH2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0327300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64238291..64239253) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGTTCCAAAGGGAGTACCTGGATTTGATTTTGGTCCCTAGTGGGTTGCTCATCATGTTTGCTTATCACCTCTTTCT GCTATACAAATATGTCAATCGCCCTCACACTACAGTCATGGGATTTGAGAATGATGACAAGAGAACTTGGGTTGCAAAAA TCATGCAGGCAAGTAATCCTTATAATCCTCCCTTTGGTTTTGATTTGATTGAAAACCCCTTAAATTATTTGAATTTGGAT TCTCTACAAGAGAAATCCTAAATTTGCGCAGTCACAGAATCTGAGTTGTTTGATCTAAGTTCGGATAGTTCAAATCCAAA GTTAATATCAAACCGTACAAATGTATTGACTGCTTGAATATAGGATTGACTTGCAGGGAACCCATATCCAAATCATATAG CTTGTTTTTTAACTTAGTAAATCATGAGCAGGCTGAAAACAAGGATGTTAAAACAGCTTTGTCTGTCCTTCAAAGCCACT CATCAACTGCTACATTCTTGGCCTCAGTCTCTTTGACTCTTTGTGCTCTTATTGGAGCTTGGATTGCCAACAATTCTAGT GTTTTCTTCCAGAGCCAATTAATCTATGGTGACACAAGACCAACCACCATTTCTATCAAGTACATTTGCCTCCTAATCTG CTTCCTCCTTGCTTTCTCATGCTTTGTTCAGTCAGCAAGGCACTTTGTTCATGCAAACTACTTGATAAGCATGCCAGATA GTTTTGTCCCAGTGAGTAGTGTGCAGCTTGCAGTTGTGAGGGGAAGTGATTTTTGGTCACTTGGTCTAAGAGCACTCTAT TTTGCTCTTGACTTGCTTCTTTGGTTTTTTGGGCCAATGCCCATGTTTGTTTGCTCAGTGGCTATGGTGCTGGTTCTCCA TTATCTTGACTCAAATTCAAGGCCATTGCACTCTACTATGATGCCAGTTTCATATGGCAAAATGAGGCCTTGACATAAAT TAA
CDS sequence (LotjaGi6g1v0327300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTCCAAAGGGAGTACCTGGATTTGATTTTGGTCCCTAGTGGGTTGCTCATCATGTTTGCTTATCACCTCTTTCT GCTATACAAATATGTCAATCGCCCTCACACTACAGTCATGGGATTTGAGAATGATGACAAGAGAACTTGGGTTGCTGAAA ACAAGGATGTTAAAACAGCTTTGTCTGTCCTTCAAAGCCACTCATCAACTGCTACATTCTTGGCCTCAGTCTCTTTGACT CTTTGTGCTCTTATTGGAGCTTGGATTGCCAACAATTCTAGTGTTTTCTTCCAGAGCCAATTAATCTATGGTGACACAAG ACCAACCACCATTTCTATCAAGTACATTTGCCTCCTAATCTGCTTCCTCCTTGCTTTCTCATGCTTTGTTCAGTCAGCAA GGCACTTTGTTCATGCAAACTACTTGATAAGCATGCCAGATAGTTTTGTCCCAGTGAGTAGTGTGCAGCTTGCAGTTGTG AGGGGAAGTGATTTTTGGTCACTTGGTCTAAGAGCACTCTATTTTGCTCTTGACTTGCTTCTTTGGTTTTTTGGGCCAAT GCCCATGTTTGTTTGCTCAGTGGCTATGGTGCTGGTTCTCCATTATCTTGACTCAAATTCAAGGCCATTGCACTCTACTA TGATGCCAGTTTCATATGGCAAAATGAGGCCTTGA
Protein sequence (LotjaGi6g1v0327300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEFQREYLDLILVPSGLLIMFAYHLFLLYKYVNRPHTTVMGFENDDKRTWVAENKDVKTALSVLQSHSSTATFLASVSLT LCALIGAWIANNSSVFFQSQLIYGDTRPTTISIKYICLLICFLLAFSCFVQSARHFVHANYLISMPDSFVPVSSVQLAVV RGSDFWSLGLRALYFALDLLLWFFGPMPMFVCSVAMVLVLHYLDSNSRPLHSTMMPVSYGKMRP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 215 | 215 | 1.3E-119 | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 1 | 215 | 215 | 1.3E-119 | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Pfam | 11 | 208 | 198 | 6.4E-61 | ||
| Phobius | 12 | 32 | 21 | - | – | |
| Phobius | 33 | 70 | 38 | - | – | |
| TMHMM | 68 | 90 | 23 | - | – | |
| Phobius | 71 | 91 | 21 | - | – | |
| Phobius | 92 | 110 | 19 | - | – | |
| Phobius | 111 | 129 | 19 | - | – | |
| TMHMM | 111 | 133 | 23 | - | – | |
| Phobius | 130 | 140 | 11 | - | – | |
| Phobius | 141 | 159 | 19 | - | – | |
| Phobius | 160 | 178 | 19 | - | – | |
| Phobius | 179 | 203 | 25 | - | – | |
| TMHMM | 181 | 203 | 23 | - | – | |
| Phobius | 204 | 224 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0327300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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