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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0329900 |
| Transcript ID | LotjaGi6g1v0329900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Squamosa promoter-binding-like protein; TAIR: AT1G20980.1 squamosa promoter binding protein-like 14; Swiss-Prot: sp|Q38741|SBP1_ANTMA Squamosa promoter-binding protein 1; TrEMBL-Plants: tr|I3S8Q2|I3S8Q2_LOTJA Squamosa promoter-binding-like protein; Found in the gene: LotjaGi6g1v0329900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64512007..64514484) extracted from Lotus japonicus Gifu genome v1.2.
CTCGTTTATTTATCTATCATATATCACCCATATAAATAATACAACTATAGGTAAGATCTTTATTTATGTGCTAACATTCA CTACATATATTTCCAATATCTTTATTTATGTGCTAAAATTAATTTGTAGAAAAATGCTTTTTAATTTATAAACCATATTT TTCTTATCATTGGAACAAATTAAAGTCATGTCACTAGTTCTCATTACTCACTTCTATTTTTATCTCAAATTTGAGGTATC AATCATTTTTTTTAAACTATTACATACCCTTAAGTTTGCCACCAATAAATGAAGAGCCTCTTGTGGAATTGTGGTCACCC TTTCTGTCATCTTATTCTTTTAACCCTTCTGTGTTTTTCTATTTATATCAACACATTTTTATGGTCTTCGCCTTGTCTTG ACTCTTGACTTCTCCATAACCTTGTTCATCAGGTGATTCATTGATCCTCTTTTTCTGCAGAATTCCCTGAACACTTATGG ATGGAAGGTGGAGTGAGGGAAAGAGGATCTTGATGTACAAGGAAGAGGATGAGTGTGAAGAAGAGCAAGAAGATGAAGAA GAAGAAGAAGAGGCCGTACTTTATGGAGAGGATGGAATTAGGAAGAAAAGGGTGGTGGTGACTGATCTATACAGCAAGAG AGGGTCCAAAGCCGGAGGCTCAGCTGTGCCGCCTTCTTGTCAGGTGGAGGGTTGCTATGCTGATCTAAGCGGCGCTAAGG CGTACCACCGGCGGCACAAGGTGTGTGAGCACCATGCCAAGGCTCCTTCCGTACTACTTTCTGAACAACAGCAAAGGTTT TGCCAGCAATGCAGCAGGTTTAGAAACCCTTACCTATTTCAAAAGAAACAGTTTTTTTTGTGAATCTAATTACACTATGG TATTTGTATTTTTTTTCTGTGATTGATGAAGGATGGGGTTTGATTAGGTTTGTGTGTCCACTATTCAATCAACCCTAGCT AGAGACAATTCTTATAGGGGTGTGGTTGATTGAAGGGTATGAAATAGGTCAATACTATATGTATAAAATTTGGAGTTTCT AACTTATTACCTTAGGAATTAAATATATATACCTATGCTATCTAGGTAGTTCATGTAATAATTAAGTTATAATTAAGTTT TTTTTTGGAAGGCCAAAAGTTAGAATTAAGTGTATTGAGAATAAGTTAGACAAGTCCGTAATTTCTAGAGGAAAAAATTT ATTGGTTAGGTTTGAGAACTCCACAAAATTGTGTACTTTCAGATTTCCACTCCTAGCAAGCATAGTTGGCTAGTAAGAGT GGTAAGCTATTTACTAGTAGTGGTACCAATAATAGTGGACAATTATATTGCTCTAGTTCTCCAAAGATTCAGAAAATGTC CAAATTGAACGATCTGATGTACATGATTCTTGACACTAGATACGTACCCTGATCATGATTTTTTTAAACCAAACCACAAG GGGTGCTTTAAACACGGTTAAACCTGTTTACAGGAGAAGGAGAAGAAAGAGAAATGCAACTCAAAGAGAATTGCAAAGCA AAACTTAAATGACAAAAATGAAAAAGCATAGCCAAATTGATGGGCATCGAGCATTTATACATGTCAATTAAGTATTTGTA CTAAGGCAGGGATCGGACACCTATGGAGATTGGAGTCATTTCTCATTGGCATTTATGTTAATTACATGTCAAGTATGGAT AGCATTTCCACTTCAGTGTGATCGATCACTTAACTCTGGAGTCATTTGTTTAATTCATTTTTTAAGTTAGAAGGTCCTCC AGGGTGTATGATCATGACAAAACACGATGGCTTCACAGTTCACACTTCACACCAAATAATGAACATTTTTGTTGCATGAC TTAATGAACAATGCTCGGTGAATGCAAGACCCAATTGATTTTGCAAATTTCGATCCATGTCTAGAAAATTTTCAATCAAT TATATAGCTAGCTAGCTAGTTGATGAGTTTGCTTTGGAACTTGGTGTTTGCTGCAGGTTTCATGAACTGTCAGAGTTTGA TGACACAAAAAGGAGTTGTAGAAGGCGCTTGGCTGGACATAATGAGAGGCGTCGCAAAAATGCATCTGAATTTCAAGGAG AAGGATTTAATGGATGAGGAGATATATTAATTTCAGACTTTCTCTCTTAATTAGGGGACAAGTCAAGCCGCCAAGCACCA CATGAGCATTAAAATAAAATCCCCCATGCATGAATCCTTCCTATTCAATCTGCGGAAGCTCTCTCTCTTCTGTCAAATCC TTGTCATTTTAAGATATATATTGTTGTTGCTGAGTTATATCTATCAATCTATGGAATATTTTCACCTGATGAATTCATAA AAAAGCTTGCTTCACTAGCTACATGCATGCCTATATTTAGTATGTGTGTTTCTTTTAATGTGTCCCAAAACTAGTACTCG AAATCTTGTCCAAATGATGCGGCATTCTTAAATAGATAGTTAGCATTGTGCCAAAGTAATATATTGAAAGAAAATTAG
CDS sequence (LotjaGi6g1v0329900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGGAAGGTGGAGTGAGGGAAAGAGGATCTTGATGTACAAGGAAGAGGATGAGTGTGAAGAAGAGCAAGAAGATGA AGAAGAAGAAGAAGAGGCCGTACTTTATGGAGAGGATGGAATTAGGAAGAAAAGGGTGGTGGTGACTGATCTATACAGCA AGAGAGGGTCCAAAGCCGGAGGCTCAGCTGTGCCGCCTTCTTGTCAGGTGGAGGGTTGCTATGCTGATCTAAGCGGCGCT AAGGCGTACCACCGGCGGCACAAGGTGTGTGAGCACCATGCCAAGGCTCCTTCCGTACTACTTTCTGAACAACAGCAAAG GTTTTGCCAGCAATGCAGCAGGTTTCATGAACTGTCAGAGTTTGATGACACAAAAAGGAGTTGTAGAAGGCGCTTGGCTG GACATAATGAGAGGCGTCGCAAAAATGCATCTGAATTTCAAGGAGAAGGATTTAATGGATGA
Protein sequence (LotjaGi6g1v0329900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDGRWSEGKRILMYKEEDECEEEQEDEEEEEEAVLYGEDGIRKKRVVVTDLYSKRGSKAGGSAVPPSCQVEGCYADLSGA KAYHRRHKVCEHHAKAPSVLLSEQQQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKNASEFQGEGFNG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 6 | 153 | 148 | 1.4E-56 | ||
| Coils | 13 | 33 | 21 | - | – | |
| PANTHER | 31 | 144 | 114 | 3.7E-56 | – | |
| Gene3D | 58 | 129 | 72 | 3.0E-35 | ||
| ProSiteProfiles | 65 | 142 | 78 | 32.163 | ||
| SUPERFAMILY | 66 | 145 | 80 | 2.09E-38 | ||
| Pfam | 68 | 141 | 74 | 1.3E-33 | ||
| MobiDBLite | 134 | 153 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Flower development | The process whose specific outcome is the progression of the flower over time, from its formation to the mature structure. The flower is the reproductive structure in a plant, and its development begins with the transition of the vegetative or inflorescence meristem into a floral meristem. |
Expression pattern of LotjaGi6g1v0329900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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