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LotjaGi6g1v0330000.2

Overview

Field Value
Gene ID LotjaGi6g1v0330000
Transcript ID LotjaGi6g1v0330000.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Dof zinc finger protein; TAIR: AT3G52440.2 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp|Q8L9V6|DOF11_ARATH Dof zinc finger protein DOF1.1; TrEMBL-Plants: tr|I1M221|I1M221_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0330000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:64527336..64532667) extracted from Lotus japonicus Gifu genome v1.2.

CTTCTCTAATCCCTCACCCTATTCCTCCATCTTCTCCATCACTCATTCTTGTCTATCCTACTCCTCATCCACCCTCACAA CCCTCATTCCTTCCTCACCACATCTATCCTTCTCCAACCCTCATTTCCTTCCAAAAATTCAACTCATTGTGTCATTCACT CCACCTTTAAACCCTAATTTGATCAATAGTTTGTTTCATCTCACTCTTATCCTAAGCAACCTAATTCTCAGAATCGACAA CACACTTGTCACTACATGTTTATCATCAAGATCAACCTCAAAACTTTGGTTCTTTTCATTACTCCATCCATAGCAAAACA TGTTCTATAAGCTTCCCCTAAGACCTCAGCGGAGCAAAAAGGGTTTTCCATAGATCTGGATTCAACCCACAATTTGATTT TGACCCACTCGATTCTATCAAAATCCACAAAGAGGTACCTCCAATTAAAGAGTTTTCCAACAATAAGGAAGATTCTCGAA GATCAGGTCGAGCTCTGGCAAGTTCATCGCATCTGAAGACCTTGAAAGTGGCACCGGATCTCACAGAGGAAAAGTTGGAG GAGGCAGGTAAACTAATGGTATTTCTCTCATTTCTCTCATTGCATGGGTAGGCTTCAAAACTAGAATTGAAATTAGAAAA GGTGATAAGGGAAGGGAAGAGGTTGCACAGAATGAGGAAATGAAAAAAAGTGGAAAAAAAGATTGTATTTTATTTATGTT TGGAATTTTGGAGAGGTGGGGGTAGTGGAGGAAGATGTAAGGAGAAAATGGGAGATGGCAAAAGGAAATGATGGAGGGGA AGGAGGTATAGGTTGAGGAGGATGAGGAGGAGGCATGAGAAAAATGTAAGTTGGGGGAGGCGAAAGCGATAAAAGGTGGG ACACATTGGTGCGAGAGATGAATGAGTGAAGGGGAAACGACAAGGGTCAAGGGTGGGTGAGGGAGGGGAAGGCGGCAGGG TTCGGGGGACACATAGAATATGGGGTGAGGTGGACGAGAGGGGAAAGTGAAGGATATGAGGGTGGCATTGAATATGGCAT CATAGGAAGAGATGATGTTGTAATGAGGTGAGGGGGAATATGAGTGATGGGTGGAGGTAGGATGAATGAGGGGAAATAAG TGTGAGTGGGAGAACTCGAAGACAGGAGAAGGGGATATAGGTGGTGGAGATAGGAAAAGGGTAAGAGGTGAGGAATGCAG GGAGTGTTGAAGGGGGTGATAAAGGGAATAAATGAGGGTGCATCAAGGTCAAGGTGAAAGAGATGTAATGTTGGTGGGGG AAACAGATGAAAGAAGGGTGCATTAAGGTGAATGTGAAAGAGGTGTGGCGTTAGTGGGGGAGAAAAATTAGACAAGGGTG GATGTGGAGCCTATGAGGGAAAGGAAAGAGTTAGGAAGAGGGAATGAGAGAGTGAATGGGAGGATGTGGATAGCTTGGGG GAGAACGGGAAGTGAAGGATGTGAGGACAGTGGTGTAGGAGAGGCAGGAGGGACGTCAGAGGGAAGGGGGTGGAGTAATG GCAAAGGAGATGAGAAAAGATCTAGGTAACTTTGGGAAAAAGGTGAGTTGTGAAGAGGGAAAGATTGAGAAGGGGAAATG GTGGAGGATAAGGATGAGATGGTTGGAGCAAAGGAGGGGAAAGAGACCGTGTAGGGGAAAAAGGAGAACAAAAGAGAATG TGGTGAAGCAGACTGAAGGTTTTCAAAATCATTCATTTTGATTTCTAATCCACATCACATATGGAGTGAGATAGGAAAGT GAAGGAGTTAAGGGACAAATGGTGTTGAAGATGTGATAAGGAAAATGATAGGGGTGTAAGGAGGTCAACCATTGGTATTG GAGACAATGACTGAAGGGTAAGCGTGGAGTTGGCAAGGAGAGGAAAAAGGTATGGCAGAGAAAGATAATATTGGTGGAGT AGGGTTGGGAATGAGGTGGGGCGGGTGAGAAGAAGAGTGACAAAGGTGAGCGTGGTGTTGTACAAGGGGGACGGGGGAGT GGTGGAAGTGGAGGTGGAGGTGCAAGGGGAATAAAGGGGGAGGGGCAGAGTAGAGGAGAGGGTGAGAAAGGGAAGGATGC ATTATTGCCACACTAGATGCACACTATGCACTTAACATTTATATATGTTTGAATATTAGTTTTAAGCAATATGAATGAAC TTTCATCTAAATGGATCAAAATCTTTTGTCTTCAAATGATGTCTTATTTTCGATCTCACTAATATCATTGTGTAATATTA ATTAAAAATACAAATGTATAGTTATATATAAATATCATAATATTATATATATATATATATATTTAATTGACATAACATTT TTTAATTGAAGCAGAAAACAAAACATCATTCGAGAAGACAAGATCTAAATCTCATCCCTGATGATTATAATAGTTCTGTA AACCATTTCTCATAAAATGGATGATAATGTGTGTTTGCAATGATATGAATAGATATCCAAACATAACTAGATAAGCATCT AAAGTTTTACTAAGGAGGTTTTTCCTAGTTAGGTTTTAATGAGACATGTTTTCCTTAATCTTTCTCCAAAGGAGGTGGTG GGTGGAGGGTTATTTTCCAGTAGGAGATCTTTGTTGATGCTTTGTATTTTTTTTATTCTTTGTTCTTTCTCTTTTCTCAT TTCTTCCTTCTTGTATTGACTTATTAAAAAAAACATAACCATCTAAAGTAACATTTTGGTTATTATAAAAAAAAAGCAAC ATTTTGGTAAAGTGAACATGGTGGGCACTTATAATTAAATGAGTACTTTTACTATATATTTATATAGTTGAATGACTAAA TTGATTGATTCTTAATCTTTAAGAGGTCAAAATGAATATTCAGTATAGTTTATATTAAAATATTGTAAATTAATTATCGC CAAAGGTAAAAAAAGGTTTGCCAGAACATTAATTTGGAATGTAAAATTCTTGACCTTTACGACCGAAAATCAATTCTGAT ATCAACCAAATATCTATGACTTGTTCACAGAAATGGTCAGTATGTGGGTGTGAAAGGGGACCAAAAAAGAACGAAATGAT GTCATAAATACTAATCAAATAGTGAATAATTGTAGAAAATAGTATTTTTATATTTTATATTATTATCTTGACTGCTCATT CGTTTGATGGCTAAAGAAATTAAACTCATAAAACTGAAACAACAAAGTTTATATTATTTTATTAAAAATTTAATGAAATG AAGACTGAAAAACTGTTGCAGTGGTGAGGGATGAAAGGAATAAGAGAGACGAAAAAGTAAGAGAGAGAATTGATCGCAAC TCCGACACAGCCACCATCACTGCCACCCCCAACTTCTCTCTTTGTTGTGGTCCTTCTCCTTCACTCTGTAATCTTGCCAT GTTCTTCATCCGTGCTTATCTCTTCTATTGGTTGTATCTTTTTTCTGAGTCTGAACTCTGAACTGAATAAATAACCTATA GGGAAGGATCAGTATATAAATATCTATGTAAAAAATCAAGTTTGAATGGTATTAATTAATTTAATTTGTTCCTATAGCTC ATTAATTTCTTTCCTTAAGAGGCACCCTCAAATCAAAACTAAAAAATCCCAAGAGATTTTTCAGTTCTCCACTTTCCATC CTCATTTTGACCATACTACTAATACCATTGCCCAGCAAGTATATATCTTATATATTATCCTCCCAGAATCACCCAAGATT TCACATTTCCTCATCTTTTCACAAGCTAAACAATATTTGAGTCAATAGAAACTTAATTATAGTCAAGATTGTGAGTATAC ATTTGAGATTTAAAGCAACCTTCATTAAATTCATTACCAATTACAAAGATATATGTAGATATTCTCCCAAACTTTTTGAC TAAAATTGAAATTGAATTACCACAGTTGTTTTTGTTTTTGTAGAATTGTGGGTAGGTAGGAAGGAAGGAAGGATCATCGC CGTGGTTTTGCTCATTGGAGATTCTGAGAGGACACGTAGAGCTGAAACCCCCTCTTCCTTAATTCCTGCATGTCCTGACA AATCAAAGAAGCAAGCACCAACACTCTATAGAGCTACTTTCTTGTATAAATACAAACCCACCAACTCTCTTATTCTGAAC ACCCACACTCATACTCAATCAAAGGTGAGAAGAAGATCAAAGAGATGGAGCAAGGTCAAGGAGATGGAAGAAGAGGTGAA AGGAGAGTGCTGCAACAAGGTGAGGCTCTGGCCCAAGCCCAAGCCCAAGCCCAGGCCCGGCAACCACAGAAGTGTCCTCG CTGTGACTCCATGAACACAAAGTTCTGTTACTACAACAACTACAGCTTGACACAGCCTCGTTACTTTTGCAAGACATGCA GAAGGTACTGGACCCAAGGTGGGGCCCTCAGGAACGTTCCTGTTGGCGGTGGTTCCCGTAAAGCTAAGCGCGCTAGAAAC TCTTCCACCGCCGGCGCTGTTGCCGGGAATGCTTCCCGTCCCCGTCCCCTGCCTCAGCAGCCACCACAGGAGGTGGTGGT CCAAACACAGCAGCCGGTGGTGGCTAAGGAGCCTTCTGCAGCTGTAGCTCCGGTGGTGGCTCCGTTTTATCAAGGTGGTG TTGGTGGAGGTGGCGGTGGATATTTGGCTGCTCTGAACCCGTCACTCCCTTTTGATCAGTCTGTGAATGTTGGGGGTGAT GCTGTGCATTCTTATGTGGGTCTTCTCTCAGGTTTTGATGTTGCTGCTCCTCCTCTTGGCTTTCAAAGCCAGAGCTACTT TCATCCGTCGCTGTTCTATCCACCTGTTACCGGAGGAAGTGGCGTGGCGGCGTCGACTCTGTTTAACTCTCAACAAGGTT TGGTTCAATCCACCATGGCTAATGTTACCTCTGCTTCTCACCATGGCTGGTCTCACCAGCCTCAGAACTTGAGCTTCATG AATAATGCAGGTAGCAGGGCTTCTTCTGATGCAGCTATGTGGAGCACTTTCACTCCCAATGTTGGTGCTGGAAACTCATC TGTTGCTGGTGGTGGTGGCGCTGGTATTGGTGGTGGTTCTTTCTCTGTTGTTCCAGATGAGTGGCCTGATGTGGTGCCAG GGTATGATGCTCCTCCTCCACCTCCTCCTTTGAACTGAGCTGAGCTGTTGCACCTGAAAATCCGGACATGTTTATCAGCA ATTAGTTTGTCTTGTTTCAGCTTTCTTATGTTTTATTTGTCTTTGAAGTGTCAGTTGTAGAATATATAGCAAACTTTGGA CCCTAGAGAATTTTGTGTTGTCAGTAGCATCAAATTGCACAGATATGATAGAGAATTTCTGCAGGGGTTGGGTTAGGTTG GTTGTTTCGTTTCTAAACTTTGTTAATTACATATAATACAGTTATATGATCA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0330000.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGCAAGGTCAAGGAGATGGAAGAAGAGGTGAAAGGAGAGTGCTGCAACAAGGTGAGGCTCTGGCCCAAGCCCAAGC CCAAGCCCAGGCCCGGCAACCACAGAAGTGTCCTCGCTGTGACTCCATGAACACAAAGTTCTGTTACTACAACAACTACA GCTTGACACAGCCTCGTTACTTTTGCAAGACATGCAGAAGGTACTGGACCCAAGGTGGGGCCCTCAGGAACGTTCCTGTT GGCGGTGGTTCCCGTAAAGCTAAGCGCGCTAGAAACTCTTCCACCGCCGGCGCTGTTGCCGGGAATGCTTCCCGTCCCCG TCCCCTGCCTCAGCAGCCACCACAGGAGGTGGTGGTCCAAACACAGCAGCCGGTGGTGGCTAAGGAGCCTTCTGCAGCTG TAGCTCCGGTGGTGGCTCCGTTTTATCAAGGTGGTGTTGGTGGAGGTGGCGGTGGATATTTGGCTGCTCTGAACCCGTCA CTCCCTTTTGATCAGTCTGTGAATGTTGGGGGTGATGCTGTGCATTCTTATGTGGGTCTTCTCTCAGGTTTTGATGTTGC TGCTCCTCCTCTTGGCTTTCAAAGCCAGAGCTACTTTCATCCGTCGCTGTTCTATCCACCTGTTACCGGAGGAAGTGGCG TGGCGGCGTCGACTCTGTTTAACTCTCAACAAGGTAGCAGGGCTTCTTCTGATGCAGCTATGTGGAGCACTTTCACTCCC AATGTTGGTGCTGGAAACTCATCTGTTGCTGGTGGTGGTGGCGCTGGTATTGGTGGTGGTTCTTTCTCTGTTGTTCCAGA TGAGTGGCCTGATGTGGTGCCAGGGTATGATGCTCCTCCTCCACCTCCTCCTTTGAACTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0330000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEQGQGDGRRGERRVLQQGEALAQAQAQAQARQPQKCPRCDSMNTKFCYYNNYSLTQPRYFCKTCRRYWTQGGALRNVPV GGGSRKAKRARNSSTAGAVAGNASRPRPLPQQPPQEVVVQTQQPVVAKEPSAAVAPVVAPFYQGGVGGGGGGYLAALNPS LPFDQSVNVGGDAVHSYVGLLSGFDVAAPPLGFQSQSYFHPSLFYPPVTGGSGVAASTLFNSQQGSRASSDAAMWSTFTP NVGAGNSSVAGGGGAGIGGGSFSVVPDEWPDVVPGYDAPPPPPPLN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 34 34 - –
MobiDBLite
mobidb-lite
1 16 16 - –
PANTHER
PTHR31992
10 280 271 1.2E-59 –
PANTHER
PTHR31992:SF108
10 280 271 1.2E-59 –
Pfam
PF02701
33 89 57 3.4E-33
IPR003851
ProSiteProfiles
PS50884
35 89 55 28.789
IPR003851
ProSitePatterns
PS01361
37 73 37 -
IPR003851
MobiDBLite
mobidb-lite
78 114 37 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0330000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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