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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0330900 |
| Transcript ID | LotjaGi6g1v0330900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT4G20970.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FLI1|BH036_ARATH Transcription factor bHLH36; TrEMBL-Plants: tr|I3T3N0|I3T3N0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0330900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64605178..64607889) extracted from Lotus japonicus Gifu genome v1.2.
CCCCACAACCGTCACAATCACTGAACTTTGATCAGCAGCATGTAATGATATTATCTTGCTTTTCTAAAAGACATGCACCA ACGATTCCAAGAAACTGACAACTATTATATGAGAAGCTAAGCTAGCTTGCTCTTTTCATGGAATGAGCATTTTCTGCTAC CTACATTGAGGTTGTGCTCCTGGAATATTGATGGATAACAACCCTAGTTCATCCAGAGTTGATAGAAAAGTCATTGAGAG GAATAGAAGAAATCAAATGAGAACACTCTACCGCAAGCTCAACTCACTGGTGCTTCATCAAACCTCAAAGGTCCCTCTCT TTTCTCTCATCTTCTTATACACATCAGAACTTCACTGACCGATTTAGGGATTCATCTGAAAAAAGTTAGTTGCTAATTAG TTACTAAACTGTTAGCGGCTGAGAAAAATTGTCGCTCTTTTAGCAAAAAAATTTGGTACTTTAATGTTAGAACTATAAAA TAAATCTATTCACATTTTTTTTAGATAAGGAAAATTTGATATAAAAAGAAGTACTATGAGTACTCCAAGCAATTACAAGT GAAATAGATATTGTTAGCAAGGAGCCAACTATTATCTGGTAAAAACAGAACAGGACTGCCAAATAATACTCCCAGCAAGA ATTATCAAAAACAGGGCTTATAACAACATACATTTTAAGAACACTTGATCCAAACATGTAATTTAAGTCTTTATGACAAA GTGAAATAAAATTTCATCCTTGTTGCAACCATCATTCTAATAAAAAATTCAATTTCAACACAAATTTGCAGTAATTTAAC CAATTTAGTGATTGATGTGAAAATAACCAGTCGCTAATTTAGTTGTTAAACTGTTAGTGTTTGAAGCGACTAAAAAACTA TCCCTCTTGGAGCAAATTTTTTGGTAGTATAATGTTAGAACTATAATATAAACCTCTTCATCTGTTTCACCTAAAAACAT AATTTTTTAGGACATTTCATCAAAACATGTTTTTAGTTTTTATGACAGCCATATAGAATTTCATCATTGTTGCTGCTATT ATTCTGATAAAAGATGTATTTGAACACAAAACTGCATTAATTTGACCAATCTAGCTATTGAACTAAGAACAAATTCAGGC ACTAATTTAGTCACTAAACTGCCATCAACCGAAGCCATTGTAATTTTTGTTGTTTGAGCAACTTTTTTGGTAGTGTAACA TTAGAAGTATGACATAAAATTGTGGGACACTTGATCATCACATGTAATTAAAGGCATTACGATAAAATGGTCTAGAGTTT GGTCGGTGTTGCTCAGTTGCTGTCATTATTCAAATAAAAATTTGAATTTCAGCACAAAATATAAAATATAAGTAATTTGA AGTATATGTTTGCTCTTTTATTTGAATATACAGGAGGCAATTTCACTACCAGATCAGCTAGAGGAAGCCACAAACTACAT AAAAAGATTACAGGTGAACCTAGAGAAAATGAAGGAAAAGAAGAACACCCTGTTGGGAATTGAGAGGCCTAATGTGATGA GTTTGAAAGAAGGCCCGAGCATGGGGTTAAAATCTCCAAAAATTGAGATACAACAAATGGGTTCAGCCTTAGATGTTGTT CTGATAACTGGGTCGGATTGTCAGTTCATGTTCAATGAGACAATTCGCGTTCTTCATGAAGAAGGAGTAGATGTTGTTAA TGCAAGTTATAAAGTCATTGAAGGTTCTGCTTTCCATTCAATACACTGCCTGGTTAGTTATATATAATAACTCTAAGTGA TCTTGATTTCCATAATGTTTATTCATGTAATAACTCTGATTGCATTGTTCAGGTGACAGGATCTGCCAATGTTGCTGAGA GGATTTCTGAACGACTAAACAAGTTTATATATGGTTCTAGCTATATTACCTTTTGATTTCTTTTGTCACAATATTGTATT TTTGATAGCATGTTTTGATGATTTTCTCGTTCTCATAATCAATTACTAAAACCCAGAAGCAATTACCAAAACTCAGCTGC AAAAAACATCTCCCTAAAATTTATTTATTATGGCTTCAGAATTAATTGTAGTAGAATTTACAAACATGTCAGAGGCTCGT GACCGTACATAAGTGGATTTAGAATTTTTTTTAAAGTTTATTTATTACTTACACCGTTCTTCTGTTTTGTGTTTGTTAAT CTTTAAACATAGGCTCATGACCAGGCAATTTGTTAAGATCTCAAATATAAACTCCATCATCAAAAAATGTGTATTCTCGT TCAGGAAAAATCATTGGACAAGGACCTTGTTATTCTAGCATCAAGATGTATCCTTCTACATCTGTTATGCTAAGAGTGGT ATTTGTAAATCCTGAGACAGATGGTGTTCCGGTATGGAACTATCAAGCAAGGGCTAAACAGTTTGAGAGCGATAGAAAAC TAACAAAATGAGAAAATGTGTGAAAAGTTAGATCTCACACCTCTTGGGTGGTGTCTGATATTTATAGCTTGGTTCTGACC CGCTTGGGATCAAGGATCGCCCGGCCCATTATGTGTACAAGTATTGCGAAGCCCACAATATTACAAAGTTGGAACGCCCA TATCAGTAATGCATATTTCCTAAGTTCTCGGCGCTTATAGAATTAATGCGCCATATAAGCTCATACCAGTACACAAGCCC ACAAGACACCAAGTCTTAAAAGCTTTAAGACGAAGTGTCTTCTTTTCGAGCCCACAAGTAATCAACTCACCC
CDS sequence (LotjaGi6g1v0330900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATAACAACCCTAGTTCATCCAGAGTTGATAGAAAAGTCATTGAGAGGAATAGAAGAAATCAAATGAGAACACTCTA CCGCAAGCTCAACTCACTGGTGCTTCATCAAACCTCAAAGGAGGCAATTTCACTACCAGATCAGCTAGAGGAAGCCACAA ACTACATAAAAAGATTACAGGTGAACCTAGAGAAAATGAAGGAAAAGAAGAACACCCTGTTGGGAATTGAGAGGCCTAAT GTGATGAGTTTGAAAGAAGGCCCGAGCATGGGGTTAAAATCTCCAAAAATTGAGATACAACAAATGGGTTCAGCCTTAGA TGTTGTTCTGATAACTGGGTCGGATTGTCAGTTCATGTTCAATGAGACAATTCGCGTTCTTCATGAAGAAGGAGTAGATG TTGTTAATGCAAGTTATAAAGTCATTGAAGGTTCTGCTTTCCATTCAATACACTGCCTGGTGACAGGATCTGCCAATGTT GCTGAGAGGATTTCTGAACGACTAAACAAGTTTATATATGGTTCTAGCTATATTACCTTTTGA
Protein sequence (LotjaGi6g1v0330900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDNNPSSSRVDRKVIERNRRNQMRTLYRKLNSLVLHQTSKEAISLPDQLEEATNYIKRLQVNLEKMKEKKNTLLGIERPN VMSLKEGPSMGLKSPKIEIQQMGSALDVVLITGSDCQFMFNETIRVLHEEGVDVVNASYKVIEGSAFHSIHCLVTGSANV AERISERLNKFIYGSSYITF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 172 | 172 | 3.1E-69 | – | |
| PANTHER | 1 | 172 | 172 | 3.1E-69 | ||
| Gene3D | 1 | 85 | 85 | 1.9E-9 | ||
| CDD | 5 | 64 | 60 | 1.7976E-5 | ||
| SUPERFAMILY | 5 | 74 | 70 | 1.44E-10 | ||
| ProSiteProfiles | 7 | 59 | 53 | 10.677 | ||
| Pfam | 9 | 60 | 52 | 2.0E-7 | ||
| Coils | 49 | 76 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi6g1v0330900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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