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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0333600 |
| Transcript ID | LotjaGi6g1v0333600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CBS domain-containing protein CBSX5; TAIR: AT5G53750.1 CBS domain-containing protein; Swiss-Prot: sp|Q84WQ5|CBSX5_ARATH CBS domain-containing protein CBSX5; TrEMBL-Plants: tr|A0A1J7FUW7|A0A1J7FUW7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0333600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64829840..64833548) extracted from Lotus japonicus Gifu genome v1.2.
GGCTTTGTTTGGATATCAATATGTCCTTTGTAAGTAAAAAGTGAATATTTATTTAATTATTTATGAATTGCGATCAAATG ATTTTAACGTTGTTCTTGCATGAACATGGAGATCCTAGATTTAGGGTTTTATGCAACCATTATTGAGCTTAAGAAAGAAC CTTATTTGTTATGAATGAGGTTTTGTCTTTTATAGGGGGGCAATCTATTACAAAATGGGTCTTAGAACAGCTTAATGAAA CTTTAGTCAAGGACTAGCCCAACTCGCAAGGATTCTGTCTAAGTCCTAAGAGGTGGACTCGCATGAGACGCTCGTTCATT CCTGTGTAGGTCGAGCCGCTCAGCTTATGAAGAGACCGGTTCACATGCCCGCAAGACGCTGAGTTCAAGCGTGTCCTAGA CTTGACTCATCGAACCCCTCGTGGCGCGAAACCTTCAAGCTAACAAGGCGCAAGTCAACTGGAGGACCCGCCCAACAGTA TGAAGATCCTCCACCCAAGGGGCATGACGCTAGCTCCAGGACGCGATGCCCTAACTGGATCAAACGTTAATTTAATTGGT ATCCAAACTCACATGGTAAACTCTACCCATTAGGTTACAAAATTGACGGCAGCCCTGGAAACATTTTTTTTCTTTGGTAA ATAGTAAATACTTTTTTTTATCTTTTTTTGTCAAATTTAAAAAAATTAATTTGAACGGTTCCTGAATATTCAGTGGCCTT GTGTTCTCCAAATCAAAGCCATGTGCTCCTCCTATAAATACTCTTTTCTCCTTCCGTTTCTCTCTCAATCTCAACAACAT TCTGATTCTTCTTCTTCTTCTCCTCTCCCATTCGTAATCAACATTGCAATTGAAATTGAAATTGAAATCCCTCTGTGTAT GGCAGTTAAATTGTTATCAGGTTATGAGGTTTCCGATCTCTGTCTTGGCAAACCCGCGCTCAGGTCCCTTCGTCTCACCG ACACCGTCGCCGACGCCCTCTCCGCCTTAAAGAGAACCGCCGGAGACACCCACCACCTCAGCGTCTGGAACTGCCACCAT TCCCTCACCAACAACATCAACAAATTACAATCTGACGAAGACAAACAGGAGGATAAGGATTGCATATGCATCGGTAAGGT TTGCATGGTCGACATCATCTGCTTCCTTTGCAAACCCCTCAACCTCGCTTCCCCTTCCGCCGCCCTGTGCTCCCCCGTCT CCGTTCTCCTCCCTGACCATTCCGCCGCCCTCCTCCGCCACCTACAACCCAATGCCAGGTTGGTTGGTTTCCGCATCTCT CTTAATTGTTTGTAGAATATTCCATCCATTATGCGAGAGGAGGGTCACGCGTGTCTCGTGTGTATGTGTGTGGCTCTGTT AATTCCGTGACTTTTGTGTGGCTTTAAATTCAGTTTGACTCCATAAATTGGGAAAAAATAAATTAATATCTACGATAATT TTTTAAGGTGATTTTTTTGACCTTTGACCAATTAAAACATGGAAGCAAACTGCCATATTAAAGCTTGTAACGTGCAAAAT TAATGGGAATGGGAATTTGTTATTTTAACCTTGTTAATTAGTAATTATTACTATAGGAAATTTAATTTTGCTAGAATCAA TTCTACAACTCAAATGCACAAACTTAGTTTAAGAAAGAGTAATTGATTTAGTTAAAAGTTAGAGAGATTAGCTTCTATTG TGAGATTCTATATATGATATTACAAAATCAATTTTATAAATGTGTACAATAACAAACATATTTCATTACACGCCAACTTA GGTAGACATAAACAACCACATTTTGAGTCATCTCTCATTGATTGAAGATTCGAACTCTTGCATTTAGTAAAATTATGTAG TAAAATCTCAATTAATGGACGAAAAACCTCCTATCCTACTTCGAAGTAGGAGTGATTCTATGCTGAGAGGTGCTTTTTGT CCATTATACACAATTCTACTATGATGTTCTAAGCCGGCCTCATATATGAGTCTATAGTTACATAAGGATACTTGAAATCA CCTAAAATAATTTTGAGTGTTATAAATTTTTTTAAGTGATTCGTCAATGCATTGCATTAGTCAATCACGTGGCAAAGAAG TCAAAACATCCGAGTTCACAAAAAGAACTGCAGCAAGAGGAACCTCACCTCCTCCCCCCAAATTGAAGTTTTGAGTGTTA ATAATTGATTTTGGAAGAAGTAACTTGAAAACTTAACTCAAAAATTAATTTTGACTTGGAAACATGCAGTTTGTTTGATG TGTTTAATTTGATTGCAGCTTATTGGAGGGAATCGATGCTATGTATGAAGGGGTGCACAATCTGGTGATACCCATACACA AAGAGAACAGGACAAGGAGAAAAGAGGTTGAATCTTTGGAGTGGTCAAGAACCCTGCACAACAAAAACCGCACCTACTGT TGGCTCACACAAGAGGACGTGATTCGCTTCCTCATCAACTCAATCGGAGTGTTCTCCCCAACACCAGCAAGCCCCATCAA CACCCTCAACGTCATCGACACACAGAACATCTTCGCCGTCAGCTACGACGACCCTGCTTCCTCTGCTCTGAACCTTCTCA CCGCCTCCCTCCTCCACCAATCCTCCGTCGCCATTGTCGACCCGCAGGGGAAGCTCGTCGGTGAAATCTCCCCTTCCATG CTAAACTCCTGCGACGAGGCCGTCGCCCCCGCCATTGCCACTCTCTCCGCCGGTGACCTCATGGCCTACATAGACTGTGG TTCCCCGCCGGAGGACATGGTCCAGCTGGTGAAAGAGAGACTCGAGGAACAGAATCTAGGTGCGGCTGTGGAGTTGTTGC TTGGTGGCGATGAAAGTGGGGTTGTGCTACCTTCTTGGCCGTCGTTTTCTTCAACGTCTTCTTCGTCGGATGAGGACTTT GGCAGCTCCGGGAAGAGCTGGAAGTCCTCGGCGGCGAGGGGGGCGAGGAGAACGGAGGCGACTGTAACTGTTTGCTATCC GTGGAGCTCGTTGGTGGCGGTGATGATTCAGGCACTTGCACACAGGGTGAGTTACGCGTGGGTTGTGGAAGAGGATGGGA CCTTGATGGGGATTGTTACGTTTGAAAATATGTTGAAAATTTTCAGGGAACAGCTGAAATCAATGTGCTAACAGTAGTGA TAAATGCTCTATGGACATGTTTTTGTATTATTTTATGTCACCTGTTTTGTCAATGAATCTAATATTGTGAGATAGATACT ACGGATTGTGCTTACACGATGATGTTTGTTTGTTGCTGATGAACAGGGTACCACGGTGCCAGAAACAAAAGTGTGTTTTT CCTCTTGTATATATTACGTGCTCGTGGCTCGTGCTTAGCGATGTGACTCTTTCATGAGATTCATTGTGTTTCCACAACTT TCGCTCCATTTCGTTCATGGGATAAAACGGGAAAATAACACCATACTGATCCACTTTTTTTTCTGTTTCACAAGAAGCAA CTTAACAAAATGGACTTTGAGTTCTCATAACTAGAACACTTAAACATCTTTAGACACCGAGAGTATATGCATAGATCAAA TGACTCAAGGAATTAATCACAAGAAGCAACTTCTCTGATTGCATCCAACGAGGGGTATTCTTAGATATTTATTGTTATTA CTTTATTAGGGTGTTTAAGTATAAGAGTTAGGTGACATCGGCTTCTCTAATTGCACCAAATGATGATTGCATCAAATGAG AGATGTTCTAAATTATTTATTATTATTAG
CDS sequence (LotjaGi6g1v0333600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGCTCCTCCTATAAATACTCTTTTCTCCTTCCGTTTCTCTCTCAATCTCAACAACATTCTGATTCTTCTTCTTCTTC TCCTCTCCCATTCGTAATCAACATTGCAATTGAAATTGAAATTGAAATCCCTCTGTGTATGGCAGTTAAATTGTTATCAG GTTATGAGGTTTCCGATCTCTGTCTTGGCAAACCCGCGCTCAGGTCCCTTCGTCTCACCGACACCGTCGCCGACGCCCTC TCCGCCTTAAAGAGAACCGCCGGAGACACCCACCACCTCAGCGTCTGGAACTGCCACCATTCCCTCACCAACAACATCAA CAAATTACAATCTGACGAAGACAAACAGGAGGATAAGGATTGCATATGCATCGGTAAGGTTTGCATGGTCGACATCATCT GCTTCCTTTGCAAACCCCTCAACCTCGCTTCCCCTTCCGCCGCCCTGTGCTCCCCCGTCTCCGTTCTCCTCCCTGACCAT TCCGCCGCCCTCCTCCGCCACCTACAACCCAATGCCAGCTTATTGGAGGGAATCGATGCTATGTATGAAGGGGTGCACAA TCTGGTGATACCCATACACAAAGAGAACAGGACAAGGAGAAAAGAGGTTGAATCTTTGGAGTGGTCAAGAACCCTGCACA ACAAAAACCGCACCTACTGTTGGCTCACACAAGAGGACGTGATTCGCTTCCTCATCAACTCAATCGGAGTGTTCTCCCCA ACACCAGCAAGCCCCATCAACACCCTCAACGTCATCGACACACAGAACATCTTCGCCGTCAGCTACGACGACCCTGCTTC CTCTGCTCTGAACCTTCTCACCGCCTCCCTCCTCCACCAATCCTCCGTCGCCATTGTCGACCCGCAGGGGAAGCTCGTCG GTGAAATCTCCCCTTCCATGCTAAACTCCTGCGACGAGGCCGTCGCCCCCGCCATTGCCACTCTCTCCGCCGGTGACCTC ATGGCCTACATAGACTGTGGTTCCCCGCCGGAGGACATGGTCCAGCTGGTGAAAGAGAGACTCGAGGAACAGAATCTAGG TGCGGCTGTGGAGTTGTTGCTTGGTGGCGATGAAAGTGGGGTTGTGCTACCTTCTTGGCCGTCGTTTTCTTCAACGTCTT CTTCGTCGGATGAGGACTTTGGCAGCTCCGGGAAGAGCTGGAAGTCCTCGGCGGCGAGGGGGGCGAGGAGAACGGAGGCG ACTGTAACTGTTTGCTATCCGTGGAGCTCGTTGGTGGCGGTGATGATTCAGGCACTTGCACACAGGGTGAGTTACGCGTG GGTTGTGGAAGAGGATGGGACCTTGATGGGGATTGTTACGTTTGAAAATATGTTGAAAATTTTCAGGGAACAGCTGAAAT CAATGTGCTAA
Protein sequence (LotjaGi6g1v0333600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCSSYKYSFLLPFLSQSQQHSDSSSSSPLPFVINIAIEIEIEIPLCMAVKLLSGYEVSDLCLGKPALRSLRLTDTVADAL SALKRTAGDTHHLSVWNCHHSLTNNINKLQSDEDKQEDKDCICIGKVCMVDIICFLCKPLNLASPSAALCSPVSVLLPDH SAALLRHLQPNASLLEGIDAMYEGVHNLVIPIHKENRTRRKEVESLEWSRTLHNKNRTYCWLTQEDVIRFLINSIGVFSP TPASPINTLNVIDTQNIFAVSYDDPASSALNLLTASLLHQSSVAIVDPQGKLVGEISPSMLNSCDEAVAPAIATLSAGDL MAYIDCGSPPEDMVQLVKERLEEQNLGAAVELLLGGDESGVVLPSWPSFSSTSSSSDEDFGSSGKSWKSSAARGARRTEA TVTVCYPWSSLVAVMIQALAHRVSYAWVVEEDGTLMGIVTFENMLKIFREQLKSMC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 47 | 455 | 409 | 1.8E-127 | – | |
| PANTHER | 47 | 455 | 409 | 1.8E-127 | – | |
| Coils | 99 | 119 | 21 | - | – | |
| CDD | 222 | 297 | 76 | 1.70331E-4 | – | |
| Gene3D | 250 | 451 | 202 | 8.7E-13 | – | |
| ProSiteProfiles | 252 | 314 | 63 | 8.485 | ||
| SUPERFAMILY | 253 | 450 | 198 | 6.55E-11 | – | |
| ProSiteProfiles | 397 | 454 | 58 | 8.867 | ||
| Pfam | 402 | 446 | 45 | 0.0023 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0333600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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