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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0334900 |
| Transcript ID | LotjaGi6g1v0334900.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sugar transporter, putative; TAIR: AT2G20780.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q0WUU6|PLT4_ARATH Probable polyol transporter 4; TrEMBL-Plants: tr|G7IPQ6|G7IPQ6_MEDTR Polyol/monosaccharide transporter 1; Found in the gene: LotjaGi6g1v0334900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64942800..64944265) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTGACATTTACTACTTAAACATTGCTCGCGCGTGTTTATTTATGCTATTAATGAGGATCGAAACTCAGGCTATAGCC ATCTTTGCTTATAATTTTGCAGATATAGGTGTTATGAGTGGAGCAGTTTTATTCATTCAGGATGATTTGAAGATAACAGA TGTTCAGGTGGAGGTACTTGTTGGAATTTTGAGCATAATATCGCTGTTGGGCAGTTTAGCAGGTGGAAAGACATCCGATG CTATCGGCAGAAAATGGACAATTGGTTTGGCAGCGATTATCTTCCAAACAGGTGGGGCTGTTATGGCTCTTGCTCCATCC TTCAAAGTGTTGATGATAGGCAGACTCTTGGCTGGGGTAGGTATAGGTTTCGGTGTCATGATCGCACCTGTGTATATCGC TGAAATTTCTCCTGCCATTGCTAGGGGATCTCTTACTTCTTTCCCTGAGATATGTATAAACTTGGGAATCCTTCTCGGTT ACATATCAAACTATGCATTTTCGGGTCTTCCAGCTCATATAAGTTGGAGGATAATGCTTGGTGTGGGACTTCTTCCTTCA GTTGTTATTGCTGTTGCACTCTTTTTCATACCTGAATCCCCAAGATGGCTTGTGGTGCAGAATAGGATTGAAGAAGCTAG ACTAGTGTTGTTAAAGATAAATGCAAGCGAGAAGGAGGCCGAAGAAAAGTTGCAAGAAATTCAGGTAGCTGCAGGTTCAG CGAATACTGAGAATTATGAACCAAAAGCTGTCTGGCGAGAAATCTTTTGTCCTTCTCCTCCAGTTCGAAGGATGCTTATA ACTGGTTGTGGAATTCAGTGTTTCCAGCAGATAACAGGCATAGACACCACTGTATACTACAGCCCCACAATTTTCAAGAA TGCTGGGATCACTGGCAAGTCTGAGGTCCTCGCAGCAACTGTTGCTGTTGGGTTCACCAAAACTCTCTTCATCTTGGTAG CTATAATGCTTATTGATAAACTGGGGAGAAAGCCTTTGCTTTATGCGAGCACGATTGGGATGACAGTTAGTTTGTTTAGC CTCAGCTTCTCTCTGGCTTTTCTGAGCCATGCAAAAATTGGGATCACATTGGCAATTATTGCAGTTTGTGGAAATGTAGC TTCCTTCTCAGTGGGAATTGGCCCCATATGCTGGGTGTTGACATCTGAGATATTTCCTTTGAGGCTCAGAGCTCAAGCAT CAGCTCTTGGAGCAGTGGGAAGCAGGGTGAGTAGTGGTGTGATCTCCATGACCTTCCTCTCGGTCTCTGAAGCAATCACA GTAGCAGGAACCTTCTTTGTCTTTGGTGTTATTTCATGTAGCGCGGTTGCCTTTGTTCATTACTGTGTTCCTGAGACAAA AGGAAAGACTCTTGAGGAAATTGAAGTGCTCTTCCAAGACAAGGATGAATTGCAAGAAAATGAAGTGGAAATGGGAGATG TGGAGCGACTGATGCAGAAGTCATGA
CDS sequence (LotjaGi6g1v0334900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTATTAATGAGGATCGAAACTCAGGCTATAGCCATCTTTGCTTATAATTTTGCAGATATAGGTGTTATGAGTGGAGC AGTTTTATTCATTCAGGATGATTTGAAGATAACAGATGTTCAGGTGGAGGTACTTGTTGGAATTTTGAGCATAATATCGC TGTTGGGCAGTTTAGCAGGTGGAAAGACATCCGATGCTATCGGCAGAAAATGGACAATTGGTTTGGCAGCGATTATCTTC CAAACAGGTGGGGCTGTTATGGCTCTTGCTCCATCCTTCAAAGTGTTGATGATAGGCAGACTCTTGGCTGGGGTAGGTAT AGGTTTCGGTGTCATGATCGCACCTGTGTATATCGCTGAAATTTCTCCTGCCATTGCTAGGGGATCTCTTACTTCTTTCC CTGAGATATGTATAAACTTGGGAATCCTTCTCGGTTACATATCAAACTATGCATTTTCGGGTCTTCCAGCTCATATAAGT TGGAGGATAATGCTTGGTGTGGGACTTCTTCCTTCAGTTGTTATTGCTGTTGCACTCTTTTTCATACCTGAATCCCCAAG ATGGCTTGTGGTGCAGAATAGGATTGAAGAAGCTAGACTAGTGTTGTTAAAGATAAATGCAAGCGAGAAGGAGGCCGAAG AAAAGTTGCAAGAAATTCAGGTAGCTGCAGGTTCAGCGAATACTGAGAATTATGAACCAAAAGCTGTCTGGCGAGAAATC TTTTGTCCTTCTCCTCCAGTTCGAAGGATGCTTATAACTGGTTGTGGAATTCAGTGTTTCCAGCAGATAACAGGCATAGA CACCACTGTATACTACAGCCCCACAATTTTCAAGAATGCTGGGATCACTGGCAAGTCTGAGGTCCTCGCAGCAACTGTTG CTGTTGGGTTCACCAAAACTCTCTTCATCTTGGTAGCTATAATGCTTATTGATAAACTGGGGAGAAAGCCTTTGCTTTAT GCGAGCACGATTGGGATGACAGTTAGTTTGTTTAGCCTCAGCTTCTCTCTGGCTTTTCTGAGCCATGCAAAAATTGGGAT CACATTGGCAATTATTGCAGTTTGTGGAAATGTAGCTTCCTTCTCAGTGGGAATTGGCCCCATATGCTGGGTGTTGACAT CTGAGATATTTCCTTTGAGGCTCAGAGCTCAAGCATCAGCTCTTGGAGCAGTGGGAAGCAGGGTGAGTAGTGGTGTGATC TCCATGACCTTCCTCTCGGTCTCTGAAGCAATCACAGTAGCAGGAACCTTCTTTGTCTTTGGTGTTATTTCATGTAGCGC GGTTGCCTTTGTTCATTACTGTGTTCCTGAGACAAAAGGAAAGACTCTTGAGGAAATTGAAGTGCTCTTCCAAGACAAGG ATGAATTGCAAGAAAATGAAGTGGAAATGGGAGATGTGGAGCGACTGATGCAGAAGTCATGA
Protein sequence (LotjaGi6g1v0334900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLMRIETQAIAIFAYNFADIGVMSGAVLFIQDDLKITDVQVEVLVGILSIISLLGSLAGGKTSDAIGRKWTIGLAAIIF QTGGAVMALAPSFKVLMIGRLLAGVGIGFGVMIAPVYIAEISPAIARGSLTSFPEICINLGILLGYISNYAFSGLPAHIS WRIMLGVGLLPSVVIAVALFFIPESPRWLVVQNRIEEARLVLLKINASEKEAEEKLQEIQVAAGSANTENYEPKAVWREI FCPSPPVRRMLITGCGIQCFQQITGIDTTVYYSPTIFKNAGITGKSEVLAATVAVGFTKTLFILVAIMLIDKLGRKPLLY ASTIGMTVSLFSLSFSLAFLSHAKIGITLAIIAVCGNVASFSVGIGPICWVLTSEIFPLRLRAQASALGAVGSRVSSGVI SMTFLSVSEAITVAGTFFVFGVISCSAVAFVHYCVPETKGKTLEEIEVLFQDKDELQENEVEMGDVERLMQKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 439 | 439 | 45.343 | ||
| Phobius | 1 | 11 | 11 | - | – | |
| Gene3D | 4 | 454 | 451 | 1.0E-121 | – | |
| SUPERFAMILY | 11 | 447 | 437 | 1.31E-65 | ||
| Phobius | 12 | 30 | 19 | - | – | |
| CDD | 13 | 446 | 434 | 0.0 | – | |
| TMHMM | 13 | 32 | 20 | - | – | |
| PANTHER | 19 | 471 | 453 | 4.6E-233 | – | |
| PANTHER | 19 | 471 | 453 | 4.6E-233 | – | |
| TIGRFAM | 20 | 446 | 427 | 9.2E-98 | ||
| Phobius | 31 | 41 | 11 | - | – | |
| TMHMM | 37 | 59 | 23 | - | – | |
| Pfam | 38 | 450 | 413 | 9.4E-103 | ||
| Phobius | 42 | 59 | 18 | - | – | |
| ProSitePatterns | 60 | 77 | 18 | - | ||
| Phobius | 60 | 70 | 11 | - | – | |
| Phobius | 71 | 90 | 20 | - | – | |
| TMHMM | 71 | 93 | 23 | - | – | |
| Phobius | 91 | 96 | 6 | - | – | |
| PRINTS | 97 | 116 | 20 | 1.6E-19 | ||
| Phobius | 97 | 118 | 22 | - | – | |
| TMHMM | 97 | 119 | 23 | - | – | |
| ProSitePatterns | 102 | 127 | 26 | - | ||
| Phobius | 119 | 123 | 5 | - | – | |
| Phobius | 124 | 147 | 24 | - | – | |
| TMHMM | 126 | 148 | 23 | - | – | |
| Phobius | 148 | 158 | 11 | - | – | |
| Phobius | 159 | 182 | 24 | - | – | |
| TMHMM | 163 | 182 | 20 | - | – | |
| Phobius | 183 | 287 | 105 | - | – | |
| Coils | 209 | 229 | 21 | - | – | |
| PRINTS | 261 | 271 | 11 | 1.6E-19 | ||
| TMHMM | 288 | 310 | 23 | - | – | |
| Phobius | 288 | 310 | 23 | - | – | |
| ProSitePatterns | 306 | 323 | 18 | - | ||
| Phobius | 311 | 316 | 6 | - | – | |
| Phobius | 317 | 339 | 23 | - | – | |
| TMHMM | 320 | 342 | 23 | - | – | |
| Phobius | 340 | 344 | 5 | - | – | |
| Phobius | 345 | 373 | 29 | - | – | |
| TMHMM | 349 | 371 | 23 | - | – | |
| PRINTS | 351 | 372 | 22 | 1.6E-19 | ||
| PRINTS | 374 | 386 | 13 | 1.6E-19 | ||
| Phobius | 374 | 384 | 11 | - | – | |
| Phobius | 385 | 405 | 21 | - | – | |
| Phobius | 406 | 410 | 5 | - | – | |
| Phobius | 411 | 435 | 25 | - | – | |
| TMHMM | 411 | 433 | 23 | - | – | |
| Phobius | 436 | 473 | 38 | - | – | |
| Coils | 439 | 459 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi6g1v0334900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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