Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0334900 |
| Transcript ID | LotjaGi6g1v0334900.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sugar transporter, putative; TAIR: AT2G20780.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q0WUU6|PLT4_ARATH Probable polyol transporter 4; TrEMBL-Plants: tr|K7M1M1|K7M1M1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0334900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64942800..64944665) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGGTGGTTTGCAAACTAGCAATTATGATACAAAGAAATATATCATTGCATGTGCCATCTTTGCTTCTCTCAATTCC GTGCTTCTCGGCTATGGTAGGTAATTCTATTTCTCTATCTTATCTTTTCCTAATTTTGTGCTTAAATTTTGATCTGCTCA TAAAATCCCAAATATCATATATGTGTTTTGCGTATAAGCATGTTTGGATCAGTTTTTATTTCCCCAGAATCAATTATGAA ACCTAGAAATTACTCATAAAAGCTTCTTCTCATAATTGACTCAGACTTCAGAATCACCTGTAGAAAGATTTCCAAACGTG CAGGAAATGCTATTGTTAGACACTTACTAACAATTGAACACAGAATCCTCTAGTTGTATTCAACCATGTTGTATTGATTT ATTTTGACATTTACTACTTAAACATTGCTCGCGCGTGTTTATTTATGCTATTAATGAGGATCGAAACTCAGGCTATAGCC ATCTTTGCTTATAATTTTGCAGATATAGGTGTTATGAGTGGAGCAGTTTTATTCATTCAGGATGATTTGAAGATAACAGA TGTTCAGGTGGAGGTACTTGTTGGAATTTTGAGCATAATATCGCTGTTGGGCAGTTTAGCAGGTGGAAAGACATCCGATG CTATCGGCAGAAAATGGACAATTGGTTTGGCAGCGATTATCTTCCAAACAGGTGGGGCTGTTATGGCTCTTGCTCCATCC TTCAAAGTGTTGATGATAGGCAGACTCTTGGCTGGGGTAGGTATAGGTTTCGGTGTCATGATCGCACCTGTGTATATCGC TGAAATTTCTCCTGCCATTGCTAGGGGATCTCTTACTTCTTTCCCTGAGATATGTATAAACTTGGGAATCCTTCTCGGTT ACATATCAAACTATGCATTTTCGGGTCTTCCAGCTCATATAAGTTGGAGGATAATGCTTGGTGTGGGACTTCTTCCTTCA GTTGTTATTGCTGTTGCACTCTTTTTCATACCTGAATCCCCAAGATGGCTTGTGGTGCAGAATAGGATTGAAGAAGCTAG ACTAGTGTTGTTAAAGATAAATGCAAGCGAGAAGGAGGCCGAAGAAAAGTTGCAAGAAATTCAGGTAGCTGCAGGTTCAG CGAATACTGAGAATTATGAACCAAAAGCTGTCTGGCGAGAAATCTTTTGTCCTTCTCCTCCAGTTCGAAGGATGCTTATA ACTGGTTGTGGAATTCAGTGTTTCCAGCAGATAACAGGCATAGACACCACTGTATACTACAGCCCCACAATTTTCAAGAA TGCTGGGATCACTGGCAAGTCTGAGGTCCTCGCAGCAACTGTTGCTGTTGGGTTCACCAAAACTCTCTTCATCTTGGTAG CTATAATGCTTATTGATAAACTGGGGAGAAAGCCTTTGCTTTATGCGAGCACGATTGGGATGACAGTTAGTTTGTTTAGC CTCAGCTTCTCTCTGGCTTTTCTGAGCCATGCAAAAATTGGGATCACATTGGCAATTATTGCAGTTTGTGGAAATGTAGC TTCCTTCTCAGTGGGAATTGGCCCCATATGCTGGGTGTTGACATCTGAGATATTTCCTTTGAGGCTCAGAGCTCAAGCAT CAGCTCTTGGAGCAGTGGGAAGCAGGGTGAGTAGTGGTGTGATCTCCATGACCTTCCTCTCGGTCTCTGAAGCAATCACA GTAGCAGGAACCTTCTTTGTCTTTGGTGTTATTTCATGTAGCGCGGTTGCCTTTGTTCATTACTGTGTTCCTGAGACAAA AGGAAAGACTCTTGAGGAAATTGAAGTGCTCTTCCAAGACAAGGATGAATTGCAAGAAAATGAAGTGGAAATGGGAGATG TGGAGCGACTGATGCAGAAGTCATGA
CDS sequence (LotjaGi6g1v0334900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGTGGTTTGCAAACTAGCAATTATGATACAAAGAAATATATCATTGCATGTGCCATCTTTGCTTCTCTCAATTCC GTGCTTCTCGGCTATGGCAGATATAGGTGTTATGAGTGGAGCAGTTTTATTCATTCAGGATGATTTGAAGATAACAGATG TTCAGGTGGAGGTACTTGTTGGAATTTTGAGCATAATATCGCTGTTGGGCAGTTTAGCAGGTGGAAAGACATCCGATGCT ATCGGCAGAAAATGGACAATTGGTTTGGCAGCGATTATCTTCCAAACAGGTGGGGCTGTTATGGCTCTTGCTCCATCCTT CAAAGTGTTGATGATAGGCAGACTCTTGGCTGGGGTAGGTATAGGTTTCGGTGTCATGATCGCACCTGTGTATATCGCTG AAATTTCTCCTGCCATTGCTAGGGGATCTCTTACTTCTTTCCCTGAGATATGTATAAACTTGGGAATCCTTCTCGGTTAC ATATCAAACTATGCATTTTCGGGTCTTCCAGCTCATATAAGTTGGAGGATAATGCTTGGTGTGGGACTTCTTCCTTCAGT TGTTATTGCTGTTGCACTCTTTTTCATACCTGAATCCCCAAGATGGCTTGTGGTGCAGAATAGGATTGAAGAAGCTAGAC TAGTGTTGTTAAAGATAAATGCAAGCGAGAAGGAGGCCGAAGAAAAGTTGCAAGAAATTCAGGTAGCTGCAGGTTCAGCG AATACTGAGAATTATGAACCAAAAGCTGTCTGGCGAGAAATCTTTTGTCCTTCTCCTCCAGTTCGAAGGATGCTTATAAC TGGTTGTGGAATTCAGTGTTTCCAGCAGATAACAGGCATAGACACCACTGTATACTACAGCCCCACAATTTTCAAGAATG CTGGGATCACTGGCAAGTCTGAGGTCCTCGCAGCAACTGTTGCTGTTGGGTTCACCAAAACTCTCTTCATCTTGGTAGCT ATAATGCTTATTGATAAACTGGGGAGAAAGCCTTTGCTTTATGCGAGCACGATTGGGATGACAGTTAGTTTGTTTAGCCT CAGCTTCTCTCTGGCTTTTCTGAGCCATGCAAAAATTGGGATCACATTGGCAATTATTGCAGTTTGTGGAAATGTAGCTT CCTTCTCAGTGGGAATTGGCCCCATATGCTGGGTGTTGACATCTGAGATATTTCCTTTGAGGCTCAGAGCTCAAGCATCA GCTCTTGGAGCAGTGGGAAGCAGGGTGAGTAGTGGTGTGATCTCCATGACCTTCCTCTCGGTCTCTGAAGCAATCACAGT AGCAGGAACCTTCTTTGTCTTTGGTGTTATTTCATGTAGCGCGGTTGCCTTTGTTCATTACTGTGTTCCTGAGACAAAAG GAAAGACTCTTGAGGAAATTGAAGTGCTCTTCCAAGACAAGGATGAATTGCAAGAAAATGAAGTGGAAATGGGAGATGTG GAGCGACTGATGCAGAAGTCATGA
Protein sequence (LotjaGi6g1v0334900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKVVCKLAIMIQRNISLHVPSLLLSIPCFSAMADIGVMSGAVLFIQDDLKITDVQVEVLVGILSIISLLGSLAGGKTSDA IGRKWTIGLAAIIFQTGGAVMALAPSFKVLMIGRLLAGVGIGFGVMIAPVYIAEISPAIARGSLTSFPEICINLGILLGY ISNYAFSGLPAHISWRIMLGVGLLPSVVIAVALFFIPESPRWLVVQNRIEEARLVLLKINASEKEAEEKLQEIQVAAGSA NTENYEPKAVWREIFCPSPPVRRMLITGCGIQCFQQITGIDTTVYYSPTIFKNAGITGKSEVLAATVAVGFTKTLFILVA IMLIDKLGRKPLLYASTIGMTVSLFSLSFSLAFLSHAKIGITLAIIAVCGNVASFSVGIGPICWVLTSEIFPLRLRAQAS ALGAVGSRVSSGVISMTFLSVSEAITVAGTFFVFGVISCSAVAFVHYCVPETKGKTLEEIEVLFQDKDELQENEVEMGDV ERLMQKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 21 | 21 | - | – | |
| Gene3D | 14 | 468 | 455 | 2.4E-122 | – | |
| ProSiteProfiles | 20 | 453 | 434 | 45.917 | ||
| TMHMM | 21 | 43 | 23 | - | – | |
| SUPERFAMILY | 22 | 461 | 440 | 1.96E-66 | ||
| Phobius | 22 | 44 | 23 | - | – | |
| PANTHER | 31 | 485 | 455 | 3.6E-233 | – | |
| PANTHER | 31 | 485 | 455 | 3.6E-233 | – | |
| CDD | 34 | 460 | 427 | 0.0 | – | |
| TIGRFAM | 34 | 460 | 427 | 4.0E-98 | ||
| Phobius | 45 | 55 | 11 | - | – | |
| Pfam | 52 | 464 | 413 | 6.1E-103 | ||
| Phobius | 56 | 73 | 18 | - | – | |
| TMHMM | 58 | 75 | 18 | - | – | |
| ProSitePatterns | 74 | 91 | 18 | - | ||
| Phobius | 74 | 84 | 11 | - | – | |
| Phobius | 85 | 104 | 20 | - | – | |
| TMHMM | 87 | 106 | 20 | - | – | |
| Phobius | 105 | 110 | 6 | - | – | |
| TMHMM | 110 | 132 | 23 | - | – | |
| PRINTS | 111 | 130 | 20 | 1.7E-19 | ||
| Phobius | 111 | 132 | 22 | - | – | |
| ProSitePatterns | 116 | 141 | 26 | - | ||
| Phobius | 133 | 137 | 5 | - | – | |
| Phobius | 138 | 161 | 24 | - | – | |
| TMHMM | 139 | 161 | 23 | - | – | |
| Phobius | 162 | 172 | 11 | - | – | |
| Phobius | 173 | 196 | 24 | - | – | |
| TMHMM | 174 | 196 | 23 | - | – | |
| Phobius | 197 | 301 | 105 | - | – | |
| Coils | 223 | 243 | 21 | - | – | |
| PRINTS | 275 | 285 | 11 | 1.7E-19 | ||
| Phobius | 302 | 324 | 23 | - | – | |
| TMHMM | 302 | 324 | 23 | - | – | |
| ProSitePatterns | 320 | 337 | 18 | - | ||
| Phobius | 325 | 330 | 6 | - | – | |
| Phobius | 331 | 353 | 23 | - | – | |
| TMHMM | 334 | 356 | 23 | - | – | |
| Phobius | 354 | 358 | 5 | - | – | |
| Phobius | 359 | 387 | 29 | - | – | |
| TMHMM | 363 | 385 | 23 | - | – | |
| PRINTS | 365 | 386 | 22 | 1.7E-19 | ||
| PRINTS | 388 | 400 | 13 | 1.7E-19 | ||
| Phobius | 388 | 398 | 11 | - | – | |
| Phobius | 399 | 419 | 21 | - | – | |
| Phobius | 420 | 424 | 5 | - | – | |
| TMHMM | 425 | 447 | 23 | - | – | |
| Phobius | 425 | 449 | 25 | - | – | |
| Phobius | 450 | 487 | 38 | - | – | |
| Coils | 453 | 473 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi6g1v0334900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…