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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0334900 |
| Transcript ID | LotjaGi6g1v0334900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sugar transporter, putative; TAIR: AT2G20780.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q0WUU6|PLT4_ARATH Probable polyol transporter 4; TrEMBL-Plants: tr|K7MA42|K7MA42_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0334900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64942800..64944792) extracted from Lotus japonicus Gifu genome v1.2.
TACGGAACTTTAAATTCCGTATTTGATAAAGTGGGGTGCCAAGCCCCATAGGTGGGGTGCCAAACCCAACTCCCCAAAAC CAAGTACATCAGAATGACCTCTGATCTCACTGAAGCTGAAGAAGAAGATGAAGGTGGTTTGCAAACTAGCAATTATGATA CAAAGAAATATATCATTGCATGTGCCATCTTTGCTTCTCTCAATTCCGTGCTTCTCGGCTATGGTAGGTAATTCTATTTC TCTATCTTATCTTTTCCTAATTTTGTGCTTAAATTTTGATCTGCTCATAAAATCCCAAATATCATATATGTGTTTTGCGT ATAAGCATGTTTGGATCAGTTTTTATTTCCCCAGAATCAATTATGAAACCTAGAAATTACTCATAAAAGCTTCTTCTCAT AATTGACTCAGACTTCAGAATCACCTGTAGAAAGATTTCCAAACGTGCAGGAAATGCTATTGTTAGACACTTACTAACAA TTGAACACAGAATCCTCTAGTTGTATTCAACCATGTTGTATTGATTTATTTTGACATTTACTACTTAAACATTGCTCGCG CGTGTTTATTTATGCTATTAATGAGGATCGAAACTCAGGCTATAGCCATCTTTGCTTATAATTTTGCAGATATAGGTGTT ATGAGTGGAGCAGTTTTATTCATTCAGGATGATTTGAAGATAACAGATGTTCAGGTGGAGGTACTTGTTGGAATTTTGAG CATAATATCGCTGTTGGGCAGTTTAGCAGGTGGAAAGACATCCGATGCTATCGGCAGAAAATGGACAATTGGTTTGGCAG CGATTATCTTCCAAACAGGTGGGGCTGTTATGGCTCTTGCTCCATCCTTCAAAGTGTTGATGATAGGCAGACTCTTGGCT GGGGTAGGTATAGGTTTCGGTGTCATGATCGCACCTGTGTATATCGCTGAAATTTCTCCTGCCATTGCTAGGGGATCTCT TACTTCTTTCCCTGAGATATGTATAAACTTGGGAATCCTTCTCGGTTACATATCAAACTATGCATTTTCGGGTCTTCCAG CTCATATAAGTTGGAGGATAATGCTTGGTGTGGGACTTCTTCCTTCAGTTGTTATTGCTGTTGCACTCTTTTTCATACCT GAATCCCCAAGATGGCTTGTGGTGCAGAATAGGATTGAAGAAGCTAGACTAGTGTTGTTAAAGATAAATGCAAGCGAGAA GGAGGCCGAAGAAAAGTTGCAAGAAATTCAGGTAGCTGCAGGTTCAGCGAATACTGAGAATTATGAACCAAAAGCTGTCT GGCGAGAAATCTTTTGTCCTTCTCCTCCAGTTCGAAGGATGCTTATAACTGGTTGTGGAATTCAGTGTTTCCAGCAGATA ACAGGCATAGACACCACTGTATACTACAGCCCCACAATTTTCAAGAATGCTGGGATCACTGGCAAGTCTGAGGTCCTCGC AGCAACTGTTGCTGTTGGGTTCACCAAAACTCTCTTCATCTTGGTAGCTATAATGCTTATTGATAAACTGGGGAGAAAGC CTTTGCTTTATGCGAGCACGATTGGGATGACAGTTAGTTTGTTTAGCCTCAGCTTCTCTCTGGCTTTTCTGAGCCATGCA AAAATTGGGATCACATTGGCAATTATTGCAGTTTGTGGAAATGTAGCTTCCTTCTCAGTGGGAATTGGCCCCATATGCTG GGTGTTGACATCTGAGATATTTCCTTTGAGGCTCAGAGCTCAAGCATCAGCTCTTGGAGCAGTGGGAAGCAGGGTGAGTA GTGGTGTGATCTCCATGACCTTCCTCTCGGTCTCTGAAGCAATCACAGTAGCAGGAACCTTCTTTGTCTTTGGTGTTATT TCATGTAGCGCGGTTGCCTTTGTTCATTACTGTGTTCCTGAGACAAAAGGAAAGACTCTTGAGGAAATTGAAGTGCTCTT CCAAGACAAGGATGAATTGCAAGAAAATGAAGTGGAAATGGGAGATGTGGAGCGACTGATGCAGAAGTCATGA
CDS sequence (LotjaGi6g1v0334900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCTCTGATCTCACTGAAGCTGAAGAAGAAGATGAAGGTGGTTTGCAAACTAGCAATTATGATACAAAGAAATATAT CATTGCATGTGCCATCTTTGCTTCTCTCAATTCCGTGCTTCTCGGCTATGATATAGGTGTTATGAGTGGAGCAGTTTTAT TCATTCAGGATGATTTGAAGATAACAGATGTTCAGGTGGAGGTACTTGTTGGAATTTTGAGCATAATATCGCTGTTGGGC AGTTTAGCAGGTGGAAAGACATCCGATGCTATCGGCAGAAAATGGACAATTGGTTTGGCAGCGATTATCTTCCAAACAGG TGGGGCTGTTATGGCTCTTGCTCCATCCTTCAAAGTGTTGATGATAGGCAGACTCTTGGCTGGGGTAGGTATAGGTTTCG GTGTCATGATCGCACCTGTGTATATCGCTGAAATTTCTCCTGCCATTGCTAGGGGATCTCTTACTTCTTTCCCTGAGATA TGTATAAACTTGGGAATCCTTCTCGGTTACATATCAAACTATGCATTTTCGGGTCTTCCAGCTCATATAAGTTGGAGGAT AATGCTTGGTGTGGGACTTCTTCCTTCAGTTGTTATTGCTGTTGCACTCTTTTTCATACCTGAATCCCCAAGATGGCTTG TGGTGCAGAATAGGATTGAAGAAGCTAGACTAGTGTTGTTAAAGATAAATGCAAGCGAGAAGGAGGCCGAAGAAAAGTTG CAAGAAATTCAGGTAGCTGCAGGTTCAGCGAATACTGAGAATTATGAACCAAAAGCTGTCTGGCGAGAAATCTTTTGTCC TTCTCCTCCAGTTCGAAGGATGCTTATAACTGGTTGTGGAATTCAGTGTTTCCAGCAGATAACAGGCATAGACACCACTG TATACTACAGCCCCACAATTTTCAAGAATGCTGGGATCACTGGCAAGTCTGAGGTCCTCGCAGCAACTGTTGCTGTTGGG TTCACCAAAACTCTCTTCATCTTGGTAGCTATAATGCTTATTGATAAACTGGGGAGAAAGCCTTTGCTTTATGCGAGCAC GATTGGGATGACAGTTAGTTTGTTTAGCCTCAGCTTCTCTCTGGCTTTTCTGAGCCATGCAAAAATTGGGATCACATTGG CAATTATTGCAGTTTGTGGAAATGTAGCTTCCTTCTCAGTGGGAATTGGCCCCATATGCTGGGTGTTGACATCTGAGATA TTTCCTTTGAGGCTCAGAGCTCAAGCATCAGCTCTTGGAGCAGTGGGAAGCAGGGTGAGTAGTGGTGTGATCTCCATGAC CTTCCTCTCGGTCTCTGAAGCAATCACAGTAGCAGGAACCTTCTTTGTCTTTGGTGTTATTTCATGTAGCGCGGTTGCCT TTGTTCATTACTGTGTTCCTGAGACAAAAGGAAAGACTCTTGAGGAAATTGAAGTGCTCTTCCAAGACAAGGATGAATTG CAAGAAAATGAAGTGGAAATGGGAGATGTGGAGCGACTGATGCAGAAGTCATGA
Protein sequence (LotjaGi6g1v0334900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTSDLTEAEEEDEGGLQTSNYDTKKYIIACAIFASLNSVLLGYDIGVMSGAVLFIQDDLKITDVQVEVLVGILSIISLLG SLAGGKTSDAIGRKWTIGLAAIIFQTGGAVMALAPSFKVLMIGRLLAGVGIGFGVMIAPVYIAEISPAIARGSLTSFPEI CINLGILLGYISNYAFSGLPAHISWRIMLGVGLLPSVVIAVALFFIPESPRWLVVQNRIEEARLVLLKINASEKEAEEKL QEIQVAAGSANTENYEPKAVWREIFCPSPPVRRMLITGCGIQCFQQITGIDTTVYYSPTIFKNAGITGKSEVLAATVAVG FTKTLFILVAIMLIDKLGRKPLLYASTIGMTVSLFSLSFSLAFLSHAKIGITLAIIAVCGNVASFSVGIGPICWVLTSEI FPLRLRAQASALGAVGSRVSSGVISMTFLSVSEAITVAGTFFVFGVISCSAVAFVHYCVPETKGKTLEEIEVLFQDKDEL QENEVEMGDVERLMQKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| TIGRFAM | 3 | 470 | 468 | 8.6E-106 | ||
| PANTHER | 18 | 495 | 478 | 1.2E-240 | – | |
| PANTHER | 18 | 495 | 478 | 1.2E-240 | – | |
| Gene3D | 20 | 478 | 459 | 8.8E-128 | – | |
| SUPERFAMILY | 23 | 471 | 449 | 5.62E-69 | ||
| Phobius | 26 | 54 | 29 | - | – | |
| TMHMM | 26 | 48 | 23 | - | – | |
| ProSiteProfiles | 30 | 463 | 434 | 48.363 | ||
| Pfam | 30 | 474 | 445 | 1.5E-106 | ||
| CDD | 33 | 470 | 438 | 0.0 | – | |
| PRINTS | 38 | 48 | 11 | 7.2E-24 | ||
| Phobius | 55 | 65 | 11 | - | – | |
| TMHMM | 61 | 83 | 23 | - | – | |
| Phobius | 66 | 83 | 18 | - | – | |
| ProSitePatterns | 84 | 101 | 18 | - | ||
| Phobius | 84 | 94 | 11 | - | – | |
| Phobius | 95 | 114 | 20 | - | – | |
| TMHMM | 95 | 117 | 23 | - | – | |
| Phobius | 115 | 120 | 6 | - | – | |
| Phobius | 121 | 142 | 22 | - | – | |
| TMHMM | 121 | 143 | 23 | - | – | |
| PRINTS | 121 | 140 | 20 | 7.2E-24 | ||
| ProSitePatterns | 126 | 151 | 26 | - | ||
| Phobius | 143 | 147 | 5 | - | – | |
| Phobius | 148 | 171 | 24 | - | – | |
| TMHMM | 150 | 172 | 23 | - | – | |
| Phobius | 172 | 182 | 11 | - | – | |
| Phobius | 183 | 206 | 24 | - | – | |
| TMHMM | 187 | 206 | 20 | - | – | |
| Phobius | 207 | 311 | 105 | - | – | |
| Coils | 233 | 253 | 21 | - | – | |
| PRINTS | 285 | 295 | 11 | 7.2E-24 | ||
| Phobius | 312 | 334 | 23 | - | – | |
| TMHMM | 312 | 334 | 23 | - | – | |
| ProSitePatterns | 330 | 347 | 18 | - | ||
| Phobius | 335 | 340 | 6 | - | – | |
| Phobius | 341 | 363 | 23 | - | – | |
| TMHMM | 344 | 366 | 23 | - | – | |
| Phobius | 364 | 368 | 5 | - | – | |
| Phobius | 369 | 397 | 29 | - | – | |
| TMHMM | 373 | 395 | 23 | - | – | |
| PRINTS | 375 | 396 | 22 | 7.2E-24 | ||
| Phobius | 398 | 408 | 11 | - | – | |
| PRINTS | 398 | 410 | 13 | 7.2E-24 | ||
| Phobius | 409 | 429 | 21 | - | – | |
| Phobius | 430 | 434 | 5 | - | – | |
| TMHMM | 435 | 457 | 23 | - | – | |
| Phobius | 435 | 459 | 25 | - | – | |
| Phobius | 460 | 497 | 38 | - | – | |
| Coils | 463 | 483 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi6g1v0334900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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