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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0335100 |
| Transcript ID | LotjaGi6g1v0335100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | envelope membrane protein, chloroplastic; TAIR: ATCG00530.1 CemA-like proton extrusion protein-like protein (ChrC); Swiss-Prot: sp|P58155|CEMA_LOTJA Chloroplast envelope membrane protein; TrEMBL-Plants: tr|A0A1C7D308|A0A1C7D308_9FABA envelope membrane protein, chloroplastic; Found in the gene: LotjaGi6g1v0335100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64957115..64957804) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAAAAAAGAAAGCATCTATTCCCTTTCTATCTCTCACATCTATAGTCTTTTTGCCCTGGTGCATCTCTTTTACATG TAAGAAAGGTATGGAATATTGGGTTACTAATTGGTGGAATACTAAGCAATTCGAAATTTTCTTGAATATCATTCAAGAAA AGAGCATTCTAAAAAAATTCATGGAATTAGAGGAACTGTTCTTCTTGGATGAACTGCTAAAGGAATATTCGGAAACACGT CTTCAAATCCTCCGTACCGGAATCCACAAAGAAACAATTCAATTGATCAAGACGCACAACGAAGATCGTATCTATACAAT TTTGCACTTCTCGACAAATATAATCTATTTCATTATTCTAAGTGGTTATTCTATTCTAGGTAATCAAGAACTTATTATTC TTAACTCTTGGGTTCAAGAATTCCTATATAACTTAAGTGACACAATAAAAGCTTTTTCTATTCTTTTAGTAACTGATTTA TGTATAGGGTTCCATTCGACTCATGGTTGGGAACTACTGATTGGGTCCGTCTATAAAGATTTTGGATTTATTCAGAATGA TCAAATTATATCTGGTCTTGTTTTTACTTTTCCAATGATTTTAGATACAATTTTAAAATATTGGATTTTCCGTTATTTAA ATCGTGCATCTCCTTCACTTGTAGTGATTTATCATTCAATGAATGACTGA
CDS sequence (LotjaGi6g1v0335100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAAAAAGAAAGCATCTATTCCCTTTCTATCTCTCACATCTATAGTCTTTTTGCCCTGGTGCATCTCTTTTACATG TAAGAAAGGTATGGAATATTGGGTTACTAATTGGTGGAATACTAAGCAATTCGAAATTTTCTTGAATATCATTCAAGAAA AGAGCATTCTAAAAAAATTCATGGAATTAGAGGAACTGTTCTTCTTGGATGAACTGCTAAAGGAATATTCGGAAACACGT CTTCAAATCCTCCGTACCGGAATCCACAAAGAAACAATTCAATTGATCAAGACGCACAACGAAGATCGTATCTATACAAT TTTGCACTTCTCGACAAATATAATCTATTTCATTATTCTAAGTGGTTATTCTATTCTAGGTAATCAAGAACTTATTATTC TTAACTCTTGGGTTCAAGAATTCCTATATAACTTAAGTGACACAATAAAAGCTTTTTCTATTCTTTTAGTAACTGATTTA TGTATAGGGTTCCATTCGACTCATGGTTGGGAACTACTGATTGGGTCCGTCTATAAAGATTTTGGATTTATTCAGAATGA TCAAATTATATCTGGTCTTGTTTTTACTTTTCCAATGATTTTAGATACAATTTTAAAATATTGGATTTTCCGTTATTTAA ATCGTGCATCTCCTTCACTTGTAGTGATTTATCATTCAATGAATGACTGA
Protein sequence (LotjaGi6g1v0335100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKKKASIPFLSLTSIVFLPWCISFTCKKGMEYWVTNWWNTKQFEIFLNIIQEKSILKKFMELEELFFLDELLKEYSETR LQILRTGIHKETIQLIKTHNEDRIYTILHFSTNIIYFIILSGYSILGNQELIILNSWVQEFLYNLSDTIKAFSILLVTDL CIGFHSTHGWELLIGSVYKDFGFIQNDQIISGLVFTFPMILDTILKYWIFRYLNRASPSLVVIYHSMND
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Hamap | 1 | 229 | 229 | 32.786 | ||
| Phobius | 1 | 7 | 7 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| Pfam | 3 | 229 | 227 | 8.8E-69 | ||
| PANTHER | 7 | 229 | 223 | 6.4E-101 | ||
| PANTHER | 7 | 229 | 223 | 6.4E-101 | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| Phobius | 25 | 103 | 79 | - | – | |
| TMHMM | 104 | 126 | 23 | - | – | |
| Phobius | 104 | 126 | 23 | - | – | |
| Phobius | 127 | 146 | 20 | - | – | |
| Phobius | 147 | 168 | 22 | - | – | |
| Phobius | 169 | 187 | 19 | - | – | |
| Phobius | 188 | 209 | 22 | - | – | |
| TMHMM | 188 | 210 | 23 | - | – | |
| Phobius | 210 | 229 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi6g1v0335100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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