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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0337000 |
| Transcript ID | LotjaGi6g1v0337000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Bromodomain protein; TAIR: AT1G61215.1 bromodomain 4; Swiss-Prot: sp|Q9H0E9|BRD8_HUMAN Bromodomain-containing protein 8; TrEMBL-Plants: tr|A0A151T7J0|A0A151T7J0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0337000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65152819..65157244) extracted from Lotus japonicus Gifu genome v1.2.
AAAACAGGGGTAGAGAGAGAAAGTAAGAACCTGTAATTAGGAAAACACAATTGTCAATTTGCTTCATCGTCCATTTTTAT TTTCTTTCGATAATTTTCTTGTTCTTGTCTCTGTCTCTGTCTCTGTCTCTTGAATGATACCTTCTTCTTCTTCTCACTTC AAACTTGAAACCCAACAAATATAATCCAAAAAAACTGAATTCCCCCAAAATTTCCGCCGGAAAACCGCTCTCGCCGCCGT GTCCGACGCCCAGAAGGTGGTTTTCGCTTCCCAATAGCCATTATCGTTCCGGTTGCCGGAGAGGGTGGTGGCTGTTTTAT TTATTTATTTTATTTTTTCGTTTTTGACGAGGGCGGTGTTTGCTAACGTGAGCCGGGTGCGCACGGTGTATGTTATTTTA AAAAAGTAAAGGTAGTGGTGGTTGTCGTTTTAATCAGGAGCGTACACGTGGACGGTGGTGATGGGGACGGAGGAGGGGAA TGGGAAATGGGGCACCTGGGAGGAGCTCATCCTCGGTGCGGCCGTTCTCCGCCACGGAACCCAAGACTGGAAGGTGGTCG CCGGCGAGCTCCGAGTCCGAACCCCTTGTCCTGATGCTTTTACTCCAGAGGTAAAATGGTAGTATTAATTAAATAATTAT TTTTTCCTTTTTTTTTTTCAAAACAAAAATGGACTAAAAAGATTAAATTTCACTCACATTATCTTTTATTATACTTTTAA TCCGAATTTTGCTGTTTATTCATTGTTATGTTTAGCAACGTATTTTTCTTAATAATGGGATATCCTCTTTAATCAGAACA TCTTATATTATATTGAAGATAAAATATTTAATACTTATCTGTTTTATATTCGAAGAATATGGCATTAAGCACATTTATAT TTATTTTTTAATGATGGTTTAAGAAATAGGGGGAAAAAAAATCTTATGCTACCCCACTGTCTTATGTGCTATTCAAACGT TAGGATAACCATAGTCAAGGACACTTGTATGGAGATACTTCATGTGAAGGGGTATAAATGGAAATCCATGTAACATAGGA CATAAAGATAAGGACTAATAAAACAAAAAAGTACGTACCTTAGGAAATAAAATATAAAATATTTTGGAAATTTTTGCTTT TTAATTCCGAAGCGTCGCGGCTCATGAGCCATCTCTCTTGACTCATTAATCTCATACTATAATAGTTACAATTAATATAA TATTTATGCTATTAGTTAAAAACAATTTTTAAGAATGTTTTTTTGTTTAGTCAACGAATGTTTTGACCGTTTTATGGGTC GTTATTATAAAAAATCAAAGATTGTGACATTATGCCACTAGTAAAAGTCATGGACCATGGTGCTAAGTAAAGAATATTTG TTAGTTACTTATGATCATGAAAAAGTGTTTTTTAGAGTGACGATTGGGTGGGTGACACGTGTCAATTGTTCTTCACAATC ACAGGTGCTGACCACTTAGTCGAAAAATGTAACACTATCTATATACAATTGTTTGTACATCATCACTTGCACATGGTCAC TGTCTCACTGAGGTGGCACACAACCTTTTGTTTTGTTTGTTATATGAAGAATGATGAATCTTTATGATCATGCCCTTTCT GTATAGCATGTCCAGGTAAATAAAGAAATTGTTTTAATTATAAAAAATTAAAAATAATTCATTTTTTTGGCCAAACTTCT TTTTGTGCTTGCTTCTTGTTGTTTAACTCAATTTACATATCTGAGAACTTAGCCTGATAGATTGATAGTTTTAATGAAAT TAGCATAATACATTTGGGTTTAAATTTACTCCTTAAAATTTGTGTTCTTCTTTGCCTCATGGTGGTTACTTAATTGTAGT TGATATATTACTTTTGTAGAATTGTGAAGCCAAGTATGAAGAATTTCTAAAGCGGTATTCTGGGAGCACGTAAGCAGAAG ATTTCATTTGAAGCTTTATAATGAAATACCCTTTGAAGGTTTCCTACAAGTTTTATAATGTCTCTCATTGTATTATGGTA AAATGGCGTTCTCAGGGCTTGGTATGAGGAGCTTAAGAAGGCTAGAATAGCAGAGCTGAAGAGAGCTCTGGAGCAATCTG ATAAAAAGATTGGGTTAGTTGCGTGGTTATCTGTCTCTTCAAGCTGAGATTTTCCGTAAGAGGACAAGAAAGTAATGATA ACATGTTTGGTTTCATGATTTGCGCAAAATCCAAGACACGTCTCAGAACCTAAGACTGTAGCTTCTAATCAGAACTGATT TTAGAGCATTGAAATGTGGAACCAAACATGCTATTATTCCTATATACTACAAGTGTTTTCCCTAAATGAATTGTCCATGA AATGTTATAGGTCATGACCAACAAGTGGTCCTTTAGAATGGACAGTCCATATACTATGCTTTTTTAGCTTAGTTTATAAT TATCTTTGTTTCAGGGCTCTTGAGTCGAAGCTTGAATCCCTCAAGGCTGAGAAGAATGAAAAAATAGATGATCGTCATGT TGAAAATGGCTCAGGAAGTCCAGCATCACATGAACCTTCACAGAAGTTGGAGAGAGTTGAATCTTCCAATAAAGAGCTTT CGAAGGATGGGCTATCTGCTGGGAGTTTCACGCATGAAACCAGGACAACAAACTGGTCTCCTGAACGCCAGGTTCCAGCC GAGGATACCGAGACTAAGCCTGAAGCTTCACACTCTAGTGAGCAGGTTAAAGTTTTGAATGTAGATAACTTGACAAATAC TATTTATGAGGGACAAGTAGGAAGTCTGAAGAAAAGAAGAGGAAAGAGGAAGAGGAAGGATTGTGGCAGAAATATTAAGG AAGCAGCAAGTATGGGAGAAAGTGACTTATTGGATTCAGCTGATGTAGTGTCCTTGTGTAAAGAAAGTTCTACCAGCAAC TATGATGAAGTTGCCAAGTCTTCTGGTGTAGATGATCAAATCAAGAACTTGAAAAAGACTGGGGCAGGAGAAATAATGGA GATGTTAGATTCTATTTTCGAAACTCAAGGAGCCTCCGCCTTCCGACGCAGACTTGATAGTCAGGTATGTTTGATTAAAA AGTCTCATCTTATCCATTTGTAGCTAGTTTCTAAGCTTCTCACCATAAATTTTTGAATGATAGGTCCAGTAGCTCTAGAC TTAGCTAGTTACTTGTATAAATGGATTTTGACTTTTACCAAGTGGCTAGTGATTGTTGTTGTTGTTCTCTAGGGTGTGCT TGTTATGGTATCTTCTAGTTGCGTGTTTAGTGTTGTTAGAATTGGTTTTGGTAAAATTAATTATGGTGGAAGTGACTTAA GATGGGTTGAAAGAGAAGTGGTTTATGTTGGGATATGTTTATGGGAAAAGTTATTTGTATAGAGTAGTGTTGTAAAATCC AATGATTAAAGGCATTATGCAGTTATTGAATCATTTGTGTATTCCTATGACAGAAGAGAGGAAAGTACAAGAAGATGATC CGGCGGCACATGGACTTCGACACCATAAGGTCAAGGATTAGCGACAAAACAATCAAGTCAGCTAGAGAACTTTTCCGGGA CCTGCTGCTACTGGCTAACAATGCTCTAGTCTTCTACTCCAAGAGCACTCGCGTGTATAAATCTGCTATGCTGCTAAGAG ACCTTGTCACCAAAAAAATGAGGGAGACTTCCAAGGGTATTAGCAGCAGCAAAGTCACCACCACCTCCGAGGCTAATGAG TCTTCAAAATTACCTGTGCAAAATCCTCGTGTGAAACCAAGAAGTGTACGCCCGGGTAACAGAAAAATTGTTGCTAAGGC AACTGGTGGCAACAACTCTGCATCTGGGGTGTCTGATGGAGCTAAGAAACCCTGTAAAGTTGATTCTCCTTCCCCAGTGG AATCCTTAACTGTTAAGAAGAAAGCTTTTGGTCGACCGAAAAAGGTTGGACGTGGAACCGCAGGACCAAAGCCTGCAACA CCATTGAAAGGGAAGAAAAGAGTTAGAACAAAGGGATAGTTTTTTCTTGTGTTTGGATACCAGTTGAATGCTACACAAAC AAACTTTATCCATAAGAAGAGTTGCGCTCACTTTTTGTTGTCTCGAAGTGAGTGCTAACATCCGTTTGCACCCGTGTCTA TAGGTATCCAAACATAGCTTTAGACAATAGGTCTGGTTCTTTGTACAAAGGTTTTTCCTTTTGGGTTAGAACTTTTTTGT TTGCTTTAGTGAAGGACAAAGGTTCATGCATCATCTAGAGGAATTCGGGTAAGGTGCAAGAGGGAACTAACTACAACAAA TGTATGAAATAGTTCTAAATTATAGTTAACTTATGAGGATAAGTTTATTAATGTAGTCTTTTGATTTTGTTTCTTGCCAG CATCTAATTTCTTCTTGTAAATTGTTAGTGACAGAAACTTTTTTTAGTGCAGTAGTTAGCAGTAAGGTTTGAATATATAA TTTCATACAAGTTATTTAAGTTCTCA
CDS sequence (LotjaGi6g1v0337000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGACGGAGGAGGGGAATGGGAAATGGGGCACCTGGGAGGAGCTCATCCTCGGTGCGGCCGTTCTCCGCCACGGAAC CCAAGACTGGAAGGTGGTCGCCGGCGAGCTCCGAGTCCGAACCCCTTGTCCTGATGCTTTTACTCCAGAGAATTGTGAAG CCAAGTATGAAGAATTTCTAAAGCGGTATTCTGGGAGCACGGCTTGGTATGAGGAGCTTAAGAAGGCTAGAATAGCAGAG CTGAAGAGAGCTCTGGAGCAATCTGATAAAAAGATTGGGGCTCTTGAGTCGAAGCTTGAATCCCTCAAGGCTGAGAAGAA TGAAAAAATAGATGATCGTCATGTTGAAAATGGCTCAGGAAGTCCAGCATCACATGAACCTTCACAGAAGTTGGAGAGAG TTGAATCTTCCAATAAAGAGCTTTCGAAGGATGGGCTATCTGCTGGGAGTTTCACGCATGAAACCAGGACAACAAACTGG TCTCCTGAACGCCAGGTTCCAGCCGAGGATACCGAGACTAAGCCTGAAGCTTCACACTCTAGTGAGCAGGTTAAAGTTTT GAATGTAGATAACTTGACAAATACTATTTATGAGGGACAAGTAGGAAGTCTGAAGAAAAGAAGAGGAAAGAGGAAGAGGA AGGATTGTGGCAGAAATATTAAGGAAGCAGCAAGTATGGGAGAAAGTGACTTATTGGATTCAGCTGATGTAGTGTCCTTG TGTAAAGAAAGTTCTACCAGCAACTATGATGAAGTTGCCAAGTCTTCTGGTGTAGATGATCAAATCAAGAACTTGAAAAA GACTGGGGCAGGAGAAATAATGGAGATGTTAGATTCTATTTTCGAAACTCAAGGAGCCTCCGCCTTCCGACGCAGACTTG ATAGTCAGAAGAGAGGAAAGTACAAGAAGATGATCCGGCGGCACATGGACTTCGACACCATAAGGTCAAGGATTAGCGAC AAAACAATCAAGTCAGCTAGAGAACTTTTCCGGGACCTGCTGCTACTGGCTAACAATGCTCTAGTCTTCTACTCCAAGAG CACTCGCGTGTATAAATCTGCTATGCTGCTAAGAGACCTTGTCACCAAAAAAATGAGGGAGACTTCCAAGGGTATTAGCA GCAGCAAAGTCACCACCACCTCCGAGGCTAATGAGTCTTCAAAATTACCTGTGCAAAATCCTCGTGTGAAACCAAGAAGT GTACGCCCGGGTAACAGAAAAATTGTTGCTAAGGCAACTGGTGGCAACAACTCTGCATCTGGGGTGTCTGATGGAGCTAA GAAACCCTGTAAAGTTGATTCTCCTTCCCCAGTGGAATCCTTAACTGTTAAGAAGAAAGCTTTTGGTCGACCGAAAAAGG TTGGACGTGGAACCGCAGGACCAAAGCCTGCAACACCATTGAAAGGGAAGAAAAGAGTTAGAACAAAGGGATAG
Protein sequence (LotjaGi6g1v0337000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTEEGNGKWGTWEELILGAAVLRHGTQDWKVVAGELRVRTPCPDAFTPENCEAKYEEFLKRYSGSTAWYEELKKARIAE LKRALEQSDKKIGALESKLESLKAEKNEKIDDRHVENGSGSPASHEPSQKLERVESSNKELSKDGLSAGSFTHETRTTNW SPERQVPAEDTETKPEASHSSEQVKVLNVDNLTNTIYEGQVGSLKKRRGKRKRKDCGRNIKEAASMGESDLLDSADVVSL CKESSTSNYDEVAKSSGVDDQIKNLKKTGAGEIMEMLDSIFETQGASAFRRRLDSQKRGKYKKMIRRHMDFDTIRSRISD KTIKSARELFRDLLLLANNALVFYSKSTRVYKSAMLLRDLVTKKMRETSKGISSSKVTTTSEANESSKLPVQNPRVKPRS VRPGNRKIVAKATGGNNSASGVSDGAKKPCKVDSPSPVESLTVKKKAFGRPKKVGRGTAGPKPATPLKGKKRVRTKG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 2 | 60 | 59 | 6.191 | ||
| PANTHER | 6 | 476 | 471 | 9.6E-183 | – | |
| PANTHER | 6 | 476 | 471 | 9.6E-183 | – | |
| CDD | 9 | 60 | 52 | 0.00605761 | ||
| Coils | 71 | 112 | 42 | - | – | |
| MobiDBLite | 103 | 119 | 17 | - | – | |
| MobiDBLite | 103 | 185 | 83 | - | – | |
| MobiDBLite | 141 | 166 | 26 | - | – | |
| Gene3D | 248 | 389 | 142 | 5.0E-19 | ||
| SMART | 266 | 370 | 105 | 1.9E-21 | ||
| CDD | 272 | 365 | 94 | 2.29371E-10 | – | |
| SUPERFAMILY | 273 | 368 | 96 | 2.35E-19 | ||
| Pfam | 275 | 354 | 80 | 2.5E-13 | ||
| ProSiteProfiles | 281 | 351 | 71 | 11.478 | ||
| MobiDBLite | 367 | 477 | 111 | - | – | |
| MobiDBLite | 371 | 393 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0337000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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