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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0337200 |
| Transcript ID | LotjaGi6g1v0337200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Secretory carrier-associated membrane protein; TAIR: AT1G61250.1 secretory carrier 3; Swiss-Prot: sp|A2YMP7|SCAM1_ORYSI Putative secretory carrier-associated membrane protein 1; TrEMBL-Plants: tr|I1MEC0|I1MEC0_SOYBN Secretory carrier-associated membrane protein; Found in the gene: LotjaGi6g1v0337200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65171751..65180197) extracted from Lotus japonicus Gifu genome v1.2.
AAAATCACTCTAAAATTCAATCATTCTAATTCAATAGTATTTATTAAAAAATTAAAATAATTTGATGATAACAACGTTGA AAAGGAGTTGTTCTCTCTTGGCTCCCTTCAAAGTGTACTAAGCTGACCAAAGACCATTCCTGTGTCTGAATTGCTGCCTT TTTCATTTTGTTTTTCTTCTTGTTGTTTATCATCCAGCCATTCATTCCCTTGCATAACAAGATTCAATATTGGAAATCCT TGAGTTCTTGAGTTCCAGATCTTTGCATAGTCTCTCTGGTTCCAATTCCGAGGCTGCTTTCTTGCTACCACCGTCATCTT CCTCTCATGGCCGGCCGCTACGACAAGAACCCCTTTGATGAAGAAGAAGTCAATCCCTTCTCTGTAAGTCCCTCTTGCTC CTTCCCAACTGTGCTGCTTTAGGAAAGTTTAGTTTTTTTCAACTGGGCATGCTCTTTTTTGTGAATTCAATCTCGTTATG TGGTGTTTGACCTTGTAATACTAGTTGTATTACTGTTTTGGATTTTGGGATGAAGATTCTCGTGGTTGGTTGTCCGTTGA CCTGTTTGATTTTTGGATTACTATTAAGGTAGTTCTAGATTTTTGTTTAATTTTATTTTCCATGAAGGAACTTATGTTTT CTGCTAAACATGTTTCACAAGGCCTATGGACTTGCTTGCATTGAAGAAACTATAGAACTGTATGTAAATATTTCCATTAA GTACCTAAGTGATACTTTTTTTGGTATGTTTATCTGTATTCTATGTAAAATACATTGGTGATGAAGTACTAGTAATCTTC AAGTTAAACGAATCTCATAGTAAAAAACTATCATAATAAGTGGATGTAGCTGACCACCATAGGCATAGGAGTTTGCTTCT TTGAAGTTCATGAGAGTATCAAGAAAGAAGAAGTAACCAGTATAAGATCTTCTAGTCTCCAAGCAGCCTACCTAGTTCGA GTATTTGTATAGTGACCTTGTATACAATTGTGCGCCATGAGAGTCAGTCGCTTTCCAATCTGAACTGAAATGGACACATT GGAGATGACTAGCCAAAAGATTAGGTTGAGTAAACATGAGATATTGCGGAGCTCCAACAAGGCATCACTACTGTGTTGGG AGAAGTGGAGTATTTGGTGCTGCTTATATGTCTTGGATGGAAGGGGAGTCTTGGCAGTGTTTGCATTGGGTAAACCATTC TTCTGGTGGAGTTCTACTGCATGCATAGTTTGATGGAAAAATAGCCCCATGTAGGATAGTGAGCAAAACGTCCAAGCTTA CAACATATATAAAAGCTGGGAAGGGGAAAGCTATCTCATGCTTTGCTCATACATGGGCTTTAATGTGGGCTTGTATCGCT TGTTAATTGGCAACGAACCTTCATTTTGTTAAAAAAAAAGACTTTTTGAAAAAGGAGAATAAAAAACCTTGTCAGCAGAA TCGACTAGAGTCACTAGACTGTTGGCGATGATTTTCCAGTTGAACTGGCCACTTTGGTCCAATTTTTCTTTATCAATTAT GATGACGAAAAAGTAATGGTGTATTTGCACATGAGGAATTAGAGTTTGAGGATTTTAGAATTTGGGGGTTGGGGCCATGG GACATTGTATTCCCAGTTGGAATCTTTTATGTTTACTTGCTTCTTAAATCTAAGTTCGGATTTTTTTGTCCTGGTAAAAT TTTGCAACACATGCTCTTGCATGATGCTTCAAATTTTTTATACACTAACAGGATCCAGCTGTGAAGGGAAAAACATCAAG CCAATCAAATTATAGTGGGGGTGCATTTTACACCACAGTGAGTTTGTTAAACCCAACCAAAAAATAATATTTTGTATGCA TGATGTGTTTCTCTTTCTTTCTGTTTTCTTTTTTAATCTTGTTTTTCAACACCATAGTGCATCAGGGAACAGTCTTGTTT GTTTAGTTTAGTGTGCTACCTTGTAATGGAAATATCATTTGCAAAGTAGGAGTCATAAACAAACTATACTCTGCTTTGAT CCTTGTGCTTGCTGAACTTCAAGGCCTGGGCCCATGACCGACTTTCTTTTTTATGAAGTTCAATCCATGAGAAATGCTTC TGTCATTCATTCTTCTCAGCATAATTAGCCATAGAAATTTTTGATCATGAATCATGTCTAATAGTAGACCATTTAAGATA CGAGATTACAAGTCATGATATGACATTATGATGTTTTAATCCATGTAACCAACTTCAGTCTAGTGGCAAAAGACTTTGGT TATACTTGTTATTGTTTACAATTACAATGATGAATTTTGTCTACCATATTTTATTTCATTTCCTCCCTTTCTACTAGTCA ACAACTTCGGTAGAGCTGAAACAGGTATTAATTAAGACAAATCATCAACTAGTTTTTCCTTGCTTTTTTTCATTCTTAGT ATTTAAAAAACAAACCCTTAACCGTGATAAAAAGATGTGTAATTCACAACATCCTGCCCAAACCTAATGCAAATGTTTTA AATTTTTTCAGAATCCTGGAAGCGTTGCCCCTGCGTCAAACTCAAGGCTTGCACCTCTTAATCCTGAACCTGCTGATTAT AACTATTTTGGGGCCACCGTTGATATACCTCTTGATTCATCAAAGGTTTGTATAATAAGATTGAGTTTGTTGAAAAATCC CCAATCCTCTGTTCTTACTTTCTTTATAATTTTAACTTTACTTACATTGTATTACATGTACTGTTTGGAGATTGATTATG GGTTTTCTAATTATGATATATTTTAATATTAGGATTTGAAAAAGAAGGAAAAGGAACTCCAAGCCAAGGAGGCTGAATTG AAAAGACGGGAACAGGTATAAAATGAGATTTGATGGCTTCTACTCGTACGCTTTATTGGTATATTTTGTATTTTGGTTTT TCTATTTTCTCCTCTTCCCCCTATCTTGTCCATGGTATAATTTTGGTAACCTTGCATGTGAGAAAAACTAATATTGACAG TGGAGTCTATATTGTATGACAGAGTTAACTAGCTTCAAATTACAAGTTCCTGAAAAAAAAAAAATTAGTGTGGAAACAGT TAAAGTGAATATTAACAACCCATTTGGTTAAGTTTTCTTAAATTATTGTCATTATTTTGAATACGATTTCTGAATTGTAA TTCTACCCTGATTTAGTGACCAGTTAGATCTTTATAATTACTATACTACTTTTTAAAGTTTGGACATTATGAGGGCATCT GAATTCTGAAATTGTTATGCATAGATTTAGAAGTCGGTTGACCTCTAGAATTATGCATCTTAAACATATTATCCCCTACA AATTTGATGACTTATGTTCTATGTTTTGAATGTTTTTGTTGCTATTTATTTATTTATTTTCTGATAACTTTGTATATATG AAGCCTTGTCTACTGATTCCTTATTAACTTACAAATGCCTGGAAATTCACCTGCATTTTTATGTTTACCGATCTATCAAA ATGCAGGAAGTCCGACGGAAAGAAGAAGCTGCTGCACGAGGTAATTTACATTTCCAGTACTTATGGTTATTGGCTAGGTT TATTTGTTTCCTCGGCTGTTACTTGTTTGTGCTTACATTCAATTGAATGGTGGGATAGCACTAATTCTGTAGATAATAGG TGTTCCAATGGTTGTACCAGTCCAACCATTCTACACATGCGGACTCATCTCTTAGAAAAGCTTGAACTAATGCTTTTTAC TTGAACAATCAATATCTTTGGTTCTGCTTTTGTTCTTAAAGTGTGTGTAAATTCTATTACATTGTTTTGCAGCTGGCATT GTTCTTGAGGAGAAGAATTGGCCGCCATTTTTTCCAATTATCCATCATGATATTGCTAACGAAATTCCAATTCATCTTCA AAGATTGCAATATGTTGCATTTACTTCATTGTTAGGTAAACTATCCTTTCTTTCGTTCTTTTTATCTTTAAATTGTTTTG TGGGACGGGGGTTATTGGTTTGCATCATCACAACTTCTTAAGCCAGCAGATGCCCTCATAATGTCAACCGACTTCTAATG AGCATTGGTTATTTCTTTCTTGAGTTGATTCCGTCTGAAGTCTCTTCTATGCATGTTTTCTGTAGATGATGATGTTGTCC TTTTGTATGATCTATGTCTCTCTCCCTCTCTCTCAATAAGTAAAAGAGAAGTTGCATATTGCAGTATTGCTATTAATTGG CGTCAATGACTAAAATGTTAAACTCCTATACTGATAAGACAACCTTGTCTTCATTGTTTTCCACGCCCTAAAATATATAA ATGAAAGGTCCATGAGAAAAGTGAAGGCTTGGATGGAGGTGAAATATATTAGAATAGGTTGTGATATACTGATGAACTAG TTTTGTCTGAATGATACCTGGCTGGTTGGAACTAACCTGTTCTGTTTAGTAAATTGAGGCATGATGAATGCATTCTCTTT TTAATTCTTCTTAGCTTGATCAAAATGCTATTTTGATTTGATTGTGGTTATAATATAGAATGTATCTACAATGTATAGTC ATCAGGTCCACATTTATTTTATAACAAAACAAATATGTAATAGGATGTGGTCCACAGTGGTCATTGATAAAAATTAAATG ATGCAGGATTGGTGTTGTGCCTTACATGGAACGTTGTAGCTGTCACTGCAGCTTGGATTAAGGGAGAAGGTCAGTTTAGA TACAGATCAAGTATCTTTCTCAGTTATTGAATGGCTCGAAATACAAATCTGATGTCCCTTTTTTGTTGTAGGTGTAAAAA TATGGTTTCTTGCTATTATCTACTTCATAGCAGGGGTTCCTGGAGCATACGTCCTGTGGTATCGCCCATTATATCGTGCT TTTAGGTAATCATTTTTTAAAGTTACATGCATTTGGATGTTTGATTTTTTTTTCTAAATGCCGTTTGATTGTTTTCACTG ATTCCTGTATAAAACTTTGAATTATTGAATACAGAAAAATAAAGTAAAACAAGGGAGCTTTTTTCAATTAAAATTAAAAA TAGAAAAATGGAAACGGACACAGAAAATGAAAATATAAAGTGAATAGGCCCTAAACTTTGATTGATCTTGATGTTGAGCT TGTTCCATTTTTATTTTGCAGGACTGATAGTGCTATGAAGTTTGGATGGTTTTTTCTGTTTTACTTGGTAAAATGACTCT TTCGGTTTATGCATATTAGCTATTTGACAAGATTCAATTTGCCTTATTGGTTTTTTCTGCTTACAGCTTCACCTCGGGTT CTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTCAAAGGAAAATCCCTGACGTACGTTGACTTCAAATATACATATA CATATACATACAACACACACACATTTAGTATATATACATACATACATACATACACACACACACACACTTGAGTTGATCCA TATAGCCAATCTCACTTAGTTCAAAATTATTTTTGCTTATGTCTCTACAATAGAGGTGATTGAAAGAAGTTTCTACGACA AGAATTATAGAATGTGACATGACTTGAACCTAGGACATGTAGACAGTTAATTACTCTACAGTTACACCAGTACACCTAAA ATACATGAGCTGAAGTCTTGTTTGATCCTAAAATGACTAAGAAAATCAAACGGATAGGCATCTTGTTAAAAATGGTACTT TGCCCTACATTTTCAAGAGACTGCCCTAATGTTTGGTGCTATTTCCTAATTGATACAGTGGCATTCTGTCAGCCATAGAT GTGATTGATGACCATACTGTGATTGGGGTAAGTATGCCTGTCCTCAAACATTGCCATTTGCCAGTTTACTTGGGTGATCT TACACATGCGAAGTCAATTTAAAATTTGTCACACAAACCATTCTACAGTTCTAAGCAATGAAAATCTTCTGCTTCTGAAT GATTGATAAATTATTTAGTCTTTGCCTATTTTCTTATAGATTTTATACTTCATTGGATTCGGATTATTCTGCCTTGAAAT ATTGGTCGGCATCTGGGTTATTCAGGTTTGGTTATTCTTTTCAAGGTTTTAACAATTTTTAAAGTGGATGCACCTAGAAC TATGAATGCACATAGCCAAAATACATATTCACTCTTTCTTTGGTTGCATTACAGCAAGTGGGTATGTACTTCCGCGGCAG TGGTAAGGCTGCTGAGATGAAGCGCGAAGCTGCAAGAGGAACATTGAGGGCTGCTATATGATAAATCACCTTGTGATTAT GTTTGTATTGATGTTGTATATTACTAGCCACAGAAATTGCGAATTAAAGTATTTTACTGAGGTGATTTTTTTGAACTGTT TCTCTTGTTTAACATGTTCATGTGGTTTGTTACTTGTTAGTGTATATTATAAGCAGAGAGTTCATCCTCTATACATGTAG TTCATCCTCAATCCCTTTTTTCCTTGACTTGTAACTAGATCTGAATGTTTGATTATCAAACATTTTTTATTTTACACGCA GATTTCGTTAATGTTTGATTAAACCATATTTGTTATTTAAAGAAAAATATTAAATGCTGAAAGTTTCAATGAAGTGGAGG ATTCTAATTTTGATAGAGACTCACCTCCTAAAACGTTTTACGCTTGGACATTTAGAAAACGTTTTGCATTTAACATTTGG TGACGGATGAGATCTGGGGTTTGAGGTTGAAGGTTCACATCAATCTCTACTACTTATCTCACTTCTAGTTTAATCAAATT TCATGCCAAAACTGCATCCACTTGGGTTTCATTTTGAATACATGAATTTTGGCCTGAAATGAAAGTAGCTGTACCCAACC GTACCGGTCGCACTGATAAAAAGTGGTTGTTTAAACCGTTAGGCCGAAAGTTTAATTTCTAGGAGCCATTTGACTATCAC CACACCCGAATTGAAATTGCGAGAGTAATTTAGTACACTAAAAAAGTAGCGCGATAAACTGAGATCTGCCCTTTTTTTTT TATGAAAGAAGGACCGAAAGCCTAAATAAAACAAATTAAACTGAGGATGACTCTACCTCATATTGCTTGAAATGTAACAG CAGGTAACAATAAACACTATATATCTAAGTATCTTCATATAATAACATATATAATAATCCTCAATAATCCTCTATCCATA TGATGCAGTGTCTCTCAAGTAATTTTCCACCTATAGATGAAAATTAGAGTACATAATCAAAAGCAACTCCCAAAACAAAC CCACCTTCATACCATAGAGATGTGTCTACTTTCTGTTTATTTATCTTATACATGACCACAATACTACTAGCAACTACAAG AGAAAACAACTGCAGCTATCATTCATTCATATTCATATAGAGCATGTTTAACATATAGTAGAAAACCCCGGTGGATAGAA GCAACTTCTTAACCTCACCACGATTTTACTCGTGTATCCAAACATGCATATAACTCCTCTTCTCAACAATAAGCGATGCA TTTCTTTTTGCAATCAATGGTGCAGCCACCACCGCCACCACCACCGCCATAGCCCTTGCCGGAGCGGCTGAAAGAGGAGA AGCACTTAGCAGGGCAAGTCACCTTTTTCTGGAAACAGGGGCCTTTGTCTTTGCACACAACAGTGGATCTCACCACACCA TTTTTAGAGCGCCCTCCACTAGGACTTCCATACCCTCCTCCGTACCCGCCTCCTATGATGCCGTTCCCAAATCCACTTCC AAATCCTGGCATGGTAAACCCACCTCCAGGACCAAAGAAGCCACCAGCTCCACCACCACCATAGTTGCTTCCATCACCTT GGTTGTTGTTGTTTCTTTTATCCTTCTTTGGCTGAGAAGCTCCAGTGGAATCAGGTCGGGTTTCCACAGAGGCTGAAGCT ATGAGGAGTACAAGGGTGAAAAGGAGAAAGATGGTTACAGGTTTCATTGTGTTGAGTTAAGTCTAGACTTTTTTTTCTTT GTGGAGAGACAGGGTTAGTGGAATATGTGATGGTGGTGAGTGAGATGTATTTAAATGTGTTAGTGGGAGAAAGTGTCATT TATTGGGAGGGTGTGGAGGACAGATGGGAGGATTTATGATCTTCTGGTAGGTTGGATGCATTAACTAGACACTTTCTTTT TCTCTTCTCTGTCCTTTTGAGATCAAGCACAAATGCAACATGTTGAATTTTTAACGGATATGATAGGATTTAACCAAAGG TGTCGTGTGATAATCGCTAACCTCGTGACTTAGTTATAAGGTTGGTGATTCAATCATCGTCCATAGAAATATAACACATT AATCAATTACCCTTTTATGCAAGCATCATCAACGAAAGGATAAATCACTACTATTATCAATCATATCGACAAAAAAAAAT ATGATAGTATTTTATCAATGAAAACTTCTGATGAAGTTTCACCATGAGATGGTTATCTCTATTCTCTCCCACAATATTGG AAAAAAAATACTTTCGCATCAAAGTATCAAATGATTTTTTTCCTTAGTTCAGTTTGCTTGCCTGTATACATGATTTGAAA TCTCACTAATCTCTTGTAGCAATTTGCTTTCCTTGTCGTGGACTTTA
CDS sequence (LotjaGi6g1v0337200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGGCCGCTACGACAAGAACCCCTTTGATGAAGAAGAAGTCAATCCCTTCTCTGATCCAGCTGTGAAGGGAAAAAC ATCAAGCCAATCAAATTATAGTGGGGGTGCATTTTACACCACAAATCCTGGAAGCGTTGCCCCTGCGTCAAACTCAAGGC TTGCACCTCTTAATCCTGAACCTGCTGATTATAACTATTTTGGGGCCACCGTTGATATACCTCTTGATTCATCAAAGGAT TTGAAAAAGAAGGAAAAGGAACTCCAAGCCAAGGAGGCTGAATTGAAAAGACGGGAACAGGAAGTCCGACGGAAAGAAGA AGCTGCTGCACGAGCTGGCATTGTTCTTGAGGAGAAGAATTGGCCGCCATTTTTTCCAATTATCCATCATGATATTGCTA ACGAAATTCCAATTCATCTTCAAAGATTGCAATATGTTGCATTTACTTCATTGTTAGGATTGGTGTTGTGCCTTACATGG AACGTTGTAGCTGTCACTGCAGCTTGGATTAAGGGAGAAGGTGTAAAAATATGGTTTCTTGCTATTATCTACTTCATAGC AGGGGTTCCTGGAGCATACGTCCTGTGGTATCGCCCATTATATCGTGCTTTTAGGACTGATAGTGCTATGAAGTTTGGAT GGTTTTTTCTGTTTTACTTGCTTCACCTCGGGTTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTCAAAGGAAAA TCCCTGACTGGCATTCTGTCAGCCATAGATGTGATTGATGACCATACTGTGATTGGGATTTTATACTTCATTGGATTCGG ATTATTCTGCCTTGAAATATTGGTCGGCATCTGGGTTATTCAGCAAGTGGGTATGTACTTCCGCGGCAGTGGTAAGGCTG CTGAGATGAAGCGCGAAGCTGCAAGAGGAACATTGAGGGCTGCTATATGA
Protein sequence (LotjaGi6g1v0337200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGRYDKNPFDEEEVNPFSDPAVKGKTSSQSNYSGGAFYTTNPGSVAPASNSRLAPLNPEPADYNYFGATVDIPLDSSKD LKKKEKELQAKEAELKRREQEVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFTSLLGLVLCLTW NVVAVTAAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTDSAMKFGWFFLFYLLHLGFCILAAVAPPIVFKGK SLTGILSAIDVIDDHTVIGILYFIGFGLFCLEILVGIWVIQQVGMYFRGSGKAAEMKREAARGTLRAAI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 144 | 144 | - | – | |
| PANTHER | 1 | 309 | 309 | 2.4E-184 | – | |
| PANTHER | 1 | 309 | 309 | 2.4E-184 | ||
| MobiDBLite | 1 | 54 | 54 | - | – | |
| MobiDBLite | 22 | 52 | 31 | - | – | |
| Coils | 78 | 110 | 33 | - | – | |
| Pfam | 118 | 289 | 172 | 1.3E-52 | ||
| Phobius | 145 | 170 | 26 | - | – | |
| TMHMM | 148 | 170 | 23 | - | – | |
| Phobius | 171 | 175 | 5 | - | – | |
| TMHMM | 174 | 196 | 23 | - | – | |
| Phobius | 176 | 196 | 21 | - | – | |
| Phobius | 197 | 215 | 19 | - | – | |
| TMHMM | 215 | 237 | 23 | - | – | |
| Phobius | 216 | 237 | 22 | - | – | |
| Phobius | 238 | 256 | 19 | - | – | |
| TMHMM | 257 | 279 | 23 | - | – | |
| Phobius | 257 | 280 | 24 | - | – | |
| Phobius | 281 | 309 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi6g1v0337200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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