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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0341600 |
| Transcript ID | LotjaGi6g1v0341600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Plant cadmium resistance protein; TAIR: AT1G11380.1 PLAC8 family protein; Swiss-Prot: sp|Q9M815|PCR8_ARATH Protein PLANT CADMIUM RESISTANCE 8; TrEMBL-Plants: tr|I1M2D9|I1M2D9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0341600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65514913..65518610) extracted from Lotus japonicus Gifu genome v1.2.
ATTACACAATAAATAATAATTTTAATTATTTATTTATTATAAAAAATAATTGCCGGAAGAAACATGGTTTGGTTGGTTCA ACTTGCTTGCTTTCTTTCTTTCTTTCATGTGCAATAACAAAACCTACGCACCAACAACAACAAATGAAGAATCCTCACTG TTTTTTTTGTTGAACAAAAAGCATTATTCCTTATTCTTTCCTGAAAACCCAAAAACCAAAACCCCAAATTTCAGAGGAAT CTTTGTGGGGAAGACAAGGGAGAGGCCTTAGCTTTGCAGCAATGGGGGATTTGGAGAAGCAGGAGAGGGTGGTTGTTGAG GGTTTGGAGGAGGAGGAAAGGGTTGAAGAGAAGGAGAGGCTATTAGAGGGGATGGAGGTTTTGGATTTTGACATGCTTTG TTCCTCTGTCGCGATGCAAACTGCCAATGGGACTTGGGGGAAGCTTGGAGGAACTTTTAGGGATGAGGAACAACACCTTG GTGTTGCTGGGGTTTTCAGGATGTGGGAGGGTGAATTACTTGATTGTTTCGATGATCGCCGCATCGCTCTTGAATCTGCA TGGTAAGGTTCTCTCTGATTGATTGTGTTGTTTGATTTTCTGTATGATATCAAGTTGTGTATATTGATTGAGTGTTGATG TTCATTTTGAGGGGTTTCCCTATGTTTTGGTGGAGAATATTGTTAGTTTGTTGTGGGAAGCTTAGCTGATTTTGAAAGAA ATGGGGGTTCATTTCTGGATAGATGAATGAAATTAATCCATGTGAGCCTATAATTTCAGCTTGAATAGGAGGAGAAATGT TTACATGTAAGATATCCTTTATTCGTGTCATTAGGTCCCTAATGTGACTTATGTTGACTGCTAATTTGCATTTCAGTTCA GTTTGCAACTTTGTGATAGTTTTCCTCTCATAAACACAAGAATGAGTAATATGCTGGGAGATTAGTTATTTACAAGGATT TGTATGATATAACATGTCTGTAATTAATGGCTCACTTGGTTTTGCAGTTGTCCATGCTACCGGTTTGGGAAGAACATGAA GCGAGCTGGTTTTGGTTCTTGCTTTATTCAGGTATATTTAAATTGCTTGGAAAATCAAAGGGCATCTGTGTTGTTTTATA CAATCTAATCATAGCTGAAAACTTTAGCAAATGGAAATCACCTTTAGAATTGGTGATTTCCATATGCTCAGATTTTCTTA CTTTTGGTAGTATAACTCTGAAGTTTGGATTTCTTTGTGTTAATATTGCAGGCAGTAGTATATTTTCTTCTTGCTATTGG TGCCTTTCTTAACTTTATTGCTTTTACGGTCACGAGGCGTCACTACTTCCTATACCTTGGAATTGCCTTCATCATTACTG TGGGAGCATATTTAGGTTTCTATCGAACTCGTGTGCGAAAGAAATTCAACATCAAGGTGGGGTATTTTTGCATATACTGC GATTGTTAGTTAACATTAAGTTATTAACTTATAGGTTTTGTCAGAGGATACATATGTTTTCTTCTTCCTGTATCATAAGT TTTGTCTTGTTTGGACAAAGTTCCGTGAAAGTGAGCAAGTAAAGGTGCATCCACCTTTCACCTTTCATATAACTTCAAGT GTGCTGTGATCTGAACTCACTACGATTTCTTTGTGGACATCCCTTGCTCACTTTAGAGGCTTTTAATTGTCTTGTTCTCT TTGTTTATAAGAACTGCGTTATATATTGATCATATTGTTGCACCATCCTTATTCAGTAATTATGAGTTGTGAAATTATTA CCAATGAAGCAATAGTGCTGACTCTGGTGTAAATATGACCAGAGACGTAGAGGGGGAGGTATAAGTATCACTTTGTTATT TTACAACTTCTGAGAATATGGGTTCTGTGTGTTGTGTCCTTATGGATCTACTGAAATTATATGTATTTTAATTACATTGC ATATAAGCAGATGACATGAAAGATAGTTATGATGTTGAAAGGCTTGACATGTCTGACTCTGACACCTTGAACTGGAATTA TATTATTTATATACCTTGCTAGATCAGAGCATTTAGTTTGATTATATGAAGAACTTTCTAATATGTGATCAAATGACAAA ATGATTGTGATGTCTCCTTTATCCTTTCTTGGAATATTTCTTTTTGACTCCGGTGATGGAGGACGTCATGAATTTTATTT TGCGCGTGTACCTGCACGCACATGTTTTGGAGTATTTTGATGCTTTGAATCATGTAATTTCCTATTATGTTGGTAGTAGC GTGTGTTGACTTTAATTTTGTCGTTTACGTGCTATTAGTTTTGTGTAATACATGGTGACCAACTTTGACATAATTTTGGC CGTGTTTGTAATTTTGTATATATAACACTTTATCTTTTGGTATCTTTTTCAGGGTAGTGATAGTTCGTTGGACGATTGCG TTTACCATTTCATCTGTCCTTGTTGTACATTATGTCAGGTCATTCAAACTTCTCTCCCTTAACTTCATAGAATATCTTTA CAAATGATAATAACCAAAATGGGGAAATATCTATAATTAGTGTCATTCATTGTATTGAGTTTTTGTATCTTTGTCTTATG GTGCAGGAGTCAAGAACACTTGAGATGAACAACGTTCAAGACGGCACCTGGCATGGTCGGGGTGACACGATATGTATAGG TGGCTATAGGGATGGGAGTAAAGCACTCACTGAGTTAAGTCCTCCTTCTATTGAGACCATCAAGCATTCTGATCAAAATT GCACGGAAAAGAGCATAGACATCAGCAGTGAATCTTGAATCAAGGTGGTGGGGAAGTTTCGAATCAATGATTCTTCATCT GAATGCTATCCCTAGTGTTTGCTCTGTATGTTTCATTTCATGTTTCCCGGCCAAGACATGAATGTGATGACGGTTGTAAC ACAAAAATTTATACTAGGATTAAGTGGAAACAGTCACATGAAATACAACTACCATATGATGTTTCCCTCTAGGATGTTTC AAATGTGCATATAGAGGCTGTCACTTGCAACTAATGGGGTGTTATTTTTATCAACCCCTGTAGTATAGTTTTTTAGTGTT ATAGTGTTGAAAGATTGCCATCTTAGTTGTTGTACTTGTATTATAATGTAAACTTATTCATGCTTTCTTATGGTCCAATT TTTACCCTTTTTTCCCTCTTGTTTTGGTGTAAAATCTGCAGATTACAAAGGCCGGGCCGGTTTTTACTGAACTTATGAGG TGGGACTCTCTTTCATGTCTGTATTTTTCAATAGGGCTATGAGAGAGTTAATCTGAATCAAGCATATGAAACATTGTCAA TATTCTTGTCAATTTGACTTACTTTAACCTCGAGTTTATTTAGCCAATCTAAGCCATATATCAATTGTAGTTGCAACTTG CAAAGTAGTTGCGTATTTTAGCATGGGGTCTAAATTTGCACCTTAGTCTTTTCATAACATATATTCAATTTACAAAGATT CAATCAAAGTGTAAAAGACAAGTGCAACTGTATATTAAATTGAAGTATCACTATCAGTCACCATTGTTATTATTACTAAT AAAGATTTATAAATGTTATAATTTATTCTTATTGAGGCGGTAGTCAATCAAAGATGCTAACAAAGCTACTTTTATAAAAG TATCACTATCAATCATGATTATTATTATTTTATTTTCACTCTATTATATATGTTTTTAAATAATTGTGTAGGAATTAGTA AAAAAGCTTGAACATAAG
CDS sequence (LotjaGi6g1v0341600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGATTTGGAGAAGCAGGAGAGGGTGGTTGTTGAGGGTTTGGAGGAGGAGGAAAGGGTTGAAGAGAAGGAGAGGCT ATTAGAGGGGATGGAGGTTTTGGATTTTGACATGCTTTGTTCCTCTGTCGCGATGCAAACTGCCAATGGGACTTGGGGGA AGCTTGGAGGAACTTTTAGGGATGAGGAACAACACCTTGGTGTTGCTGGGGTTTTCAGGATGTGGGAGGGTGAATTACTT GATTGTTTCGATGATCGCCGCATCGCTCTTGAATCTGCATGTTGTCCATGCTACCGGTTTGGGAAGAACATGAAGCGAGC TGGTTTTGGTTCTTGCTTTATTCAGGCAGTAGTATATTTTCTTCTTGCTATTGGTGCCTTTCTTAACTTTATTGCTTTTA CGGTCACGAGGCGTCACTACTTCCTATACCTTGGAATTGCCTTCATCATTACTGTGGGAGCATATTTAGGTTTCTATCGA ACTCGTGTGCGAAAGAAATTCAACATCAAGGGTAGTGATAGTTCGTTGGACGATTGCGTTTACCATTTCATCTGTCCTTG TTGTACATTATGTCAGGAGTCAAGAACACTTGAGATGAACAACGTTCAAGACGGCACCTGGCATGGTCGGGGTGACACGA TATGTATAGGTGGCTATAGGGATGGGAGTAAAGCACTCACTGAGTTAAGTCCTCCTTCTATTGAGACCATCAAGCATTCT GATCAAAATTGCACGGAAAAGAGCATAGACATCAGCAGTGAATCTTGA
Protein sequence (LotjaGi6g1v0341600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDLEKQERVVVEGLEEEERVEEKERLLEGMEVLDFDMLCSSVAMQTANGTWGKLGGTFRDEEQHLGVAGVFRMWEGELL DCFDDRRIALESACCPCYRFGKNMKRAGFGSCFIQAVVYFLLAIGAFLNFIAFTVTRRHYFLYLGIAFIITVGAYLGFYR TRVRKKFNIKGSDSSLDDCVYHFICPCCTLCQESRTLEMNNVQDGTWHGRGDTICIGGYRDGSKALTELSPPSIETIKHS DQNCTEKSIDISSES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 111 | 111 | - | – | |
| PANTHER | 11 | 222 | 212 | 1.8E-55 | ||
| PANTHER | 11 | 222 | 212 | 1.8E-55 | – | |
| TIGRFAM | 74 | 199 | 126 | 2.2E-29 | ||
| Pfam | 75 | 195 | 121 | 1.1E-21 | ||
| TMHMM | 108 | 130 | 23 | - | – | |
| Phobius | 112 | 134 | 23 | - | – | |
| Phobius | 135 | 139 | 5 | - | – | |
| Phobius | 140 | 158 | 19 | - | – | |
| TMHMM | 140 | 159 | 20 | - | – | |
| Phobius | 159 | 255 | 97 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0341600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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