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LotjaGi6g1v0341900.1

Overview

Field Value
Gene ID LotjaGi6g1v0341900
Transcript ID LotjaGi6g1v0341900.1
Lotus japonicus genome version Gifu v1.2
Description Homogentisate phytyltransferase; TAIR: AT2G18950.1 homogentisate phytyltransferase 1; Swiss-Prot: sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase; TrEMBL-Plants: tr|K7LZY0|K7LZY0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0341900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:65531713..65540250) extracted from Lotus japonicus Gifu genome v1.2.

GCCGTGTATAGCTGGTTAGTAGTGCGTAGTTTGAAAATTCCGATCCACTTAGTATGGTGGATTATATTTTTAATTCAATG ACGTAATAGTGAACTGAATTTTAGTCTATAAATTAGCTAGGAGTCATTAATTAGATGAGGGAAATTAAATATTCTTGTTC TTGCATTTGGTGCCACCAGTGCTGTTGGTGGGTTCTGTTCTGTGTGAAGATGGAGTCGTATCTTGTTGGATCTTTTCCTC ATGCCTCTTCAATCACCACTGGTATCTTTATGTTTTCTTTCAAACATGCACTCACTAATCCATTACTTTCTTTTTCCATT TCATGATCTATTTTGTGTACAACTTTGGTATTTGGCAATTTTTTTATTACGAAATCATTTGCTGAGAGGAATCATTGGTA ATTGAAGGTGGAAATCTCTTGCGGAGCAAGGCCAATAACAACATTTACCATGCAAGTATGTCTCACATATCTCCCTTCTT CTTTTTTGTCGGAGGATGGAGTTTCACCGACCTTGGCAGGCCATAGTTGATGATGTTACATTATTTACGTTATTTTTTAT TAACATTAAATATCCACATGTATAATTTTATGAAGATATAAATGAATGAAAAGGAGACGAAGTCCCCTCGCTGGCGTTGG GAAGGTGTGCTTCCCCACCGTTGTCCTTCTCTCTCAATTCCAACCCAACCATTGCCGCCTCTTACTTTAGTAAATTCAAT ACACTATAATGTGTTTTTTTATTTTTAAAAATATATTTTAAAATTTTTAAGGGAAGGGAGAGAAAGTGTATTTTGCTATA AAAAGAAAGAATTTTCCAGAACAATAATTCTTTCTGCAAAACCTTGTACAACCCATCAATCTCACAGAAACAACCAACAA AAAGAAGAGAAAACCCCAAAACCCTACCATGTTGCTGTCATCGAACAATTGCAAAACCTCCTCTCTCATTTGATAACGAC AAACCCGGAATTTTTTTCTCAATCAAAAAGCAAAACCTTAAGTAATATTTTCAACATGAAAGTCAATATTGAAAATTTGT TTTGCGTTGCCATTTGACTGATCAACATCCAAATTTGGTGATCTAGGTTCTTATGTACCTAAATCTTCACAACACAAATG GAAAGCTAAAAAAGAATATCCTGTTTCGAGGTCACGGATGCCATGTTTGAACAATCATTACAAATACACTGAAGGACTAT CTACATACCAAGAGGACGATAGGAAATATTCTATAAAAACATCTCTAATTGGATCATCTTTTGAATCTGAACCTCATGCT GCTGATCTTCAAAGCAGTTTGGACTCTGCCAAAAAATTCTTGGTTGCTTTCTACAGGTTTTCCACTCCATACTCATACGC AACTATTGCAAAAGTAAGTTCCAATCACTCTCATAACTAATCATCAAATGTTTTAGTTAATAAATAATTACTTTTATTTG TATGGAAATTAAATAATTGTGGATTATTTTTTTGGTACATCGGAAAATTAAATAATTAAATAATTGTGTATTATAGATAT TTTGAATCTCTTAAAAAGGCTGACTTTATTTTTTATTGTGTAGATATTATACACAGCTTCTATATCTCTCCTCGCGGTGG AGAAATCATCAGACATGTCTTTATTGTTTTTCACTGGTTTATTGAAGGTGAAGCCTAAAAAATGACGTCTCTCTATAAAA AATCGAACTTGCAGTATTCATCTAACTTTAGTAATACCTTTTTTTTTATGTTTCAGGTTGTCATACCACAAATATTTATG GGGATTTATCTTAACGGTGTTAATCAATTGTATGATATTGAAATAGATAAGGTATGAATTGAAACTTAAAAATGATAAAG AATAAACTACGTACCTTTTCTTTTGTGTCTTTTGGGCTTCTGCATTATTCAAATAATATACATATATGTGTGTGCGTGAG ATAGTGACATAATTGTAGTAATAACTATTAAGTGAGATATCCAAAAACATGTAAAAACCAAGAGTATAATTTGTTTTTGA AAGCAAAGACGAACCAAGAGTATATATAAATATTTCCTCACATGCAAAGATTTTAGTGGTTTTTATGATTTTTAATTTTT TTTAAGTTTCCGCAATTGTTGTAGCCTTTGATGTGGTTGACATAACAAACAAAGTTTATGTCTTAAACTTTATGAGGAAT TACCTTATGAGTTCTGTTACTAATTGGTTGCATCTTTTACTGCAGATAAACAAGCCACATCTTCCATTGGCATCTGGGCA ACTATCGTATACAACTGCTGTCTTTATTATGACATCTTCTTTAATTTTGGTGCCATATAGATCCACATATTTCTATAATG ATATTTATTAACGATAAGCTTCCTTGAGAGAGTAAAGTAAGGCTGGCTCTTTTATTCTTTTACAGAGTTGTTGCCTTGCG TGGATTTTTGGTTCACAGCCATTGAATTGGAATCTTATGCTAAGTTTCATGATATTGACGGCTTATTCAATCAATGTGAG TTGTTTTGAGCTGTATCTGGACTTATTTTTTCTTAGCTCTGTACTCCCATTCATGGCTAGTGTCTTAACCTTTGATTGAA CATCTTCAAGTGGAATTTGTACCTTCACCATCAAGAACTTGTACCTTAGTTTAATGAAAGAATAAACCTATTGATTGCTG AACTTGTATGCATGTTTAACCTTTAAAACCCATAATACTTTGAAGATGATCAATTCAACTCCCTATTTGATCACCTATAA CTTTGTCCAGATAAAATTTAATGAAATGCATGTTGTATTTATTTTATTTTATTTTTTGGTAAGCAAAATTGTATTATAGA GGTACTAGGCCACTACAAGGGACATAGAAAAAAGACTAAGGCAACAACAGACAGCAACAAACAACCATGCATCCATTATC TAACTAAACCACTACAAGACCAGCTGCTAATAATTAAAAAACGACCCTAACAATCCTCTGAGATACTCCAGCAGCAAACA AGGCCAATAGCAAGAGAAGGTAAGCCAAATATGCAGAGAAACTTTAGCTTTTAATTCCCCTGTACACCCCAGAAAGAAAC TATATAAGTTCCCAAATCCTCAAATTGATCCAGCTAGCTGAAAATGCATGTTGTATTATTGTTTGTTGAGTACATGTCAA ATTTTTTCACGTATAATATGCGATATTAATTTTACTTTATCCATGTTTGAGGTTATACATGAAAAGTATATTTAGGTTCA AATGTGGATTTGAACTATTTCAAAGGTTAAAATTATCTATTAGATGAAAATGCATGAATGATTCTAAATTATACCCGGAA TAAGTATTTAAAAAAAAAACAGAATCTTTAGACTTTGAACAGAGGACAATACATTATATATGTTAGCTTGTGATAAAGTT GACATTTGGTGAAAGAGTTGACATTTGGTGAATTGGTGATAGAGACTATGATATGGTAATTATACATTATTTGTTAGCTT GTGAAGGGAGTACTATTTATTATAGGAAAAATAACAAGGATAAAGTTGACATTTAATTTGGTGATAGACACTGTGATACG GTGATATCATGTCATGAAGTAATTACTCCAAAATTATAATTTTGTATTTTGTTGTGTTATTTTAAAATTTTAGAGGAAAA GGCTAACAAAATTTTAATGATACATTTTATTAACTTACTAGCTTCTTAAATACTCTCACCATACCTATATGACTGATATT TTAAGATTGTTGCACAAGTATTAAGAAATAACAATTAACGTTATTGTTTTATTAAAATAACTATTCTAACTTCCTATTAT GCCCTTTATCTCTCTTATTAATTCTAACTTTTCAATTTTCCTACCACCAATAAATGAAGGGTACAATTGGTAAAATATAA TTAATGCTCTCTTGAAATTATAAAAGTGTCAAAATAGGAACAAAAAAAAAATCAAAATAATACTCCCTCCGGTCCTATTT ATAAGCATGAAAGAGAAGAAAAATCTTGGTCCTTTTTATAAGAACCAAATGAAAGTTTGAGCTATATTAATTAATTTTTT CCAATGATGCCCTTATTAATTCTAACTTGTAAAATGTGTCTCATTAATTATTCTCTTTCTTTTCCACTTTCCAACACTAA TAACAAAGGGTAATTTTGGAAGTTCATTTTAATTTAAGACAAATTTAATGCATTTTATCTAGTTTAACTACATTTCTTAA ACTATGTGAATTTTTTTTTTGTTGCTTATAAATAGGACCGGAGGGAGTATCAGTTATATAGAAATAGAGGAAGTATAATT TTTGGATAAATGAGATACGTTGGACTTCTAACTATTTTCCATAAGCTTTTCTTTGGGATAGGGACTTTTTTTTTCTTTTC AAAATACCTCTTGAGATGGTGGAATTTCAAATATATTTTTTGGGAAAAAATTCTCATAAAACTACTTAGTATGTTCAAAA TTCTATTATTTGATATCCAAACAAGATATTTTATATTAATAATTAAAATCCTCTAAAATATTAACTCATTATAATTTACA GCTGAAACACAGAATAAGCTACTAGATGAAGATACAAGAATATTTTTTAACTAAGACACTTAAAAGTTGTTTGATATTTG ATAGTAGTTTTTAATTTTTTCAGGTGCCTCTATTGAGATGGAAGGGAAATCCAATTCTTGCAGCAATGACCTTTACTTCT CTTTGGGGATTTATTTATCCAATCACATATTTTCTTCATATGCAGGTTTTGTCCAATTACCAATTGTGCTTCTTTGAATA TTTCAAGTTCAAGACCAACATTAATCATTGTCTTTGATACACACAACAATTATAAAAATCTTTCTCCTAAGTTTTTACTG TTGGTTGTTGGAGAGCCATGGTCAAATATTTGATACTATTATTTGAACTGAATGAAGATATATAAAGCAAAAGGTTAAGG AAAACTGAATGTGTAGGGAGAAGTATGACTTTTACTTTCATTTCTTTGAGTCTAAGATATAAATTTGCATGGGAAGATAA CTATGCCAACTATAGCAATCACACAAGTGATAGAGATATTGTAACTAATTATGAAAAAATAATAATCGATCAAATGGTAG CATGAAAGTCACTAAGGTGCCAAAATTGCTTGGTCTACTAGGCCAGCCTATTCTTCGGTCCATCTTTTTTAGTGAGTTGA GTTGAAATTTTGAACCCAAATTCTAAAAGTAGGTAAGCTCAATCATATCTAACCTACAACTTGACGAACTAATGGCAGGT TGGGAAGTGTTAGCTCGCCAACCCATATATATTTTCACCTCATTTATAGGTTATGTTTTGTCTAAAGCTTTCATGGTTGC ATGACATTATCATTTAAAATTGTTACTTGATTATTATTGGTTGAAGTAAAATTTTGCTGATGATTGTAGAACACATTTAG TAATGTTAAGAAAGTTAAAGCTTTCATGATTGCATAACATTATCATTTATAATTGTTAGTTGATTATTGATTGAAGTAAA ATTTAGCTGATGATTGTAGACACATTTAGTAATGTTAAAAAGTTAAGTGAGTGTGTATTAAAGAAAAATTAACATTTACC AATTATAGTTGCTATTGAGGTTCGGTTACAATTTTTAATAATAAGACATGATAACTATTTGTTTGATATTGTCATTGGTG AAACTTTTTGTTGAGCTCATAACCTTTGAAGATGAAGAACAAGTAAAATATGATTCTAATTTTTACACGTGACAACATAT ACAAAAAGTGAAAGATTTCTTCAAATTGTTAATCGCATTTTTTTTTATTTCACTATATTTTCTAAGTGGATCTACCCACT AAAAATGTGAATTGAGTTGAGACTTTAAACTTAAATAAAAAAAAAAACAGCCCAAGCCGCATTTTAGTGGATCAATGGCG GGACTGGCTAACCCACCCCACTAGCTATCATTTGTTATCGCCCTCTAAATAATATACTTTCACCATATAGTCCTAAGCGT CAAACGTGTGTATTCTTACTAACCCTTCCATGATATTAATTAAAATATATATGAAAGATGAAAGAAAGAAAATGGATATA TATGATTTTAGTTTTAGCAATATTGTTCTCAGTGTGGATAGTACACAATAGTTTTCCATCCAACAAATATATCTTGAGGA ACCCATTTTTTTATACTAATTCATGTAACAATGCCCAGACTTTCGTGTTCAAGAGGCCTGCTGTCTTTCCAAGATCACTC GCTTTTGTTCATGTATTATTGAGCTTCTACTTTGTAGGTATATCATTCTTGAAGGTAAATACCTTTTTCCTTTGAAAACA TACGTTTGCTTCCAACATCAAACTTTTGGTTCAATATGTTAACCTAATGTGAAAATTTTATTCGATTTATGTAGGATATA CCTGATATTGAAGGAGATAAAAAATTTGGCATCCATTCATTTTCAATGCGTTTTGGAAAAAAACGGGTATGTTCATCAAG TCCAATATCCATGTACAATAGCTTCTGCCTCTAGCTAATTAACTAATCTTTGCTAGGTATTTTGGATTTGTGTATCCCTT CTTGAAATGGCTTTCGGAGTAGGCCTCCTGGTCGGAGCAACATCTTCTTGCTTAAGTAATAGAATTGTCACGGTAATGTA CTTATTTACATGTGTAGGTTGAAATTATATTGTATATGCCTTGTCTTCCTTATTCGATCGGTGCTAATGTGTTAGGTTCT CGGACACGCTGTTCTTGCTTCGGTTCTCGGGTTCCATGCCAAATTTGTAGATTTGGAAAGCAATGCTTCCACAATGTCTT TCTATAAGCTTGTCTGGAAGGTAATCGTTTATCTTCGAGACTGTTTACGATTAGAGTAGTTCAAAATCAAGAATATTGAT TTAAAGAAATAACTATTTACTTACTTCATTAGAATACTTATATTGACTTAGATATATTGCATAGATAATCTTCAAATCTT CAACTCTTGAGCTAGTTCTTAGGTTGAGTTAAATCTCCCAAATTTTAATATAATATCAGTGTCTATCCTAGATCCGTTTG ATGGTGGAGGCATGAGAGGTGTGTTATTGGTTATGGATATGACATAGATAATCTTTATAAATAATAGAACAACTCTCAAC TCTTTAGCTAGTTTTTGAAATGAATTAAGCCTTCCAAATTTAATATACTTTTCCATGTTTTTGATAAATAAACTTATTTA ATTTCTAGAGATTTTCATATCCCAATTGAAGTAAAAAGGGGTGTACCAAAAATGCAGTTGTTTCTGAACATAAATATTAT CATCCGTTTTAACACTGTTTAAAGCATACAATAAAATGAGACACGAATTATATTGCCAATTTACCTGTGATTATTTTCAA ATTATTTGCACAAAAATCTTGGTCTTTTCTCTTATATATTATAATATAATATTTTATTGATGTCTTGTTTCTTTTACAGC TATTATATGCAGAGTGCTTCCTTATACCTTTCCTTAGATGAAGATTAGTTCGTAAAGTTGGCTTGGTGATAAGTTTTGCC TAAGTGGTGCATCTAGATTTTGTCACGGATTAGATTTTGTCACGGATTTTGGGAATAAAGAAATGATTTCTTTATGTTAC TATATATGGATTTAAGATGATGAAATGTGTCAATGAAGTTAATGAATGAGGGTTGACACTTGTCGCAATTTTCTCTTTCA GCTTCTGCATTATAGTTATTGTATAGATTTCTTCTAATAGAAACAGTGATATTTATAAAGAAGTCCATGCCTAATGGAAA ATGATGTGTCCTGCATATATTTCATGAAAGTAGTTCAACATCTGTGTACTTGACAAGTGTTCAAAGTGTAAATTATGAAA AGGTATGCCAAAAACCTGCTCAAAAGAACATATGGGTAATCCTCAAGCTCAATCTGAGAGGCGCCACTGTAATTCCAAAG AAACAAGGATCAAAAGATGTTCCAACATTTTTTTAAATAGCTAACCAGACTAAAGTTTTGTTAATAAAATCAGTATGACC TTTTGACGCATAGCTATTGCGGAATCTAGAGCATCATTTCTGAGGCCACTTTCAAGACCCTTTTGCAATAGTTTCTCTCA GAGCAATCAAATATTCCATGGTCTTAAACAAAAGTTTAATTCCTTGTTCTGCACCAGGTGTTGGTTCTGCAGCAGCGTCC ATATTCTGGAAATGTACAAATTGTGATGATCCCATAGAGTAGCCGAGTCAAGTAAAAAGGATCAATAGTACTTATTCAAA CAATTATTACTTGAACAAATCAAACAATAGAGTGGATATTACAAAAGCAAGGGCAGAGGAAAAAAATGATATTCTTACAT AGGCTGACACGCATCCACACTAGTGACATACTGAAGCACAAACTTAGGTGTTATTATTTTGGAATACCAGGTGAACCATT TTTGGGATATAACCTTTGATCCTAAAGGAAAATCTCCAACAAAAACTAGTCCATTTGGAATTGATTTCAGAACAAGCATA TGCCTATATAACACCACTCATTCCTTCCTTACACAATTTCTTATGTATAAGATGTTTTACTATCTCAGCTAAATTCCTTG TTGATGTCTTCGTTTTACACTGGTAAAGCTTTTGACATTGCCAATCCTTTTATTCTAT 

CDS sequence (LotjaGi6g1v0341900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGGGAAATTAAATATTCTTGTTCTTGCATTTGGTGCCACCAGTGCTGTTGGTGGGTTCTGTTCTGTGTGAAGATGGA GTCGTATCTTGTTGGATCTTTTCCTCATGCCTCTTCAATCACCACTGGTGGAAATCTCTTGCGGAGCAAGGCCAATAACA ACATTTACCATGCAAGTTCTTATGTACCTAAATCTTCACAACACAAATGGAAAGCTAAAAAAGAATATCCTGTTTCGAGG TCACGGATGCCATGTTTGAACAATCATTACAAATACACTGAAGGACTATCTACATACCAAGAGGACGATAGGAAATATTC TATAAAAACATCTCTAATTGGATCATCTTTTGAATCTGAACCTCATGCTGCTGATCTTCAAAGCAGTTTGGACTCTGCCA AAAAATTCTTGGTTGCTTTCTACAGGTTTTCCACTCCATACTCATACGCAACTATTGCAAAAATATTATACACAGCTTCT ATATCTCTCCTCGCGGTGGAGAAATCATCAGACATGTCTTTATTGTTTTTCACTGGTTTATTGAAGGTTGTCATACCACA AATATTTATGGGGATTTATCTTAACGGTGTTAATCAATTGTATGATATTGAAATAGATAAGATAAACAAGCCACATCTTC CATTGGCATCTGGGCAACTATCGTATACAACTGCTGTCTTTATTATGACATCTTCTTTAATTTTGAGTTGTTGCCTTGCG TGGATTTTTGGTTCACAGCCATTGAATTGGAATCTTATGCTAAGTTTCATGATATTGACGGCTTATTCAATCAATGTGCC TCTATTGAGATGGAAGGGAAATCCAATTCTTGCAGCAATGACCTTTACTTCTCTTTGGGGATTTATTTATCCAATCACAT ATTTTCTTCATATGCAGACTTTCGTGTTCAAGAGGCCTGCTGTCTTTCCAAGATCACTCGCTTTTGTTCATGTATTATTG AGCTTCTACTTTGTAGGTATATCATTCTTGAAGGATATACCTGATATTGAAGGAGATAAAAAATTTGGCATCCATTCATT TTCAATGCGTTTTGGAAAAAAACGGGTATTTTGGATTTGTGTATCCCTTCTTGAAATGGCTTTCGGAGTAGGCCTCCTGG TCGGAGCAACATCTTCTTGCTTAAGTAATAGAATTGTCACGGTTCTCGGACACGCTGTTCTTGCTTCGGTTCTCGGGTTC CATGCCAAATTTGTAGATTTGGAAAGCAATGCTTCCACAATGTCTTTCTATAAGCTTGTCTGGAAGCTATTATATGCAGA GTGCTTCCTTATACCTTTCCTTAGATGA 

Protein sequence (LotjaGi6g1v0341900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MREIKYSCSCIWCHQCCWWVLFCVKMESYLVGSFPHASSITTGGNLLRSKANNNIYHASSYVPKSSQHKWKAKKEYPVSR SRMPCLNNHYKYTEGLSTYQEDDRKYSIKTSLIGSSFESEPHAADLQSSLDSAKKFLVAFYRFSTPYSYATIAKILYTAS ISLLAVEKSSDMSLLFFTGLLKVVIPQIFMGIYLNGVNQLYDIEIDKINKPHLPLASGQLSYTTAVFIMTSSLILSCCLA WIFGSQPLNWNLMLSFMILTAYSINVPLLRWKGNPILAAMTFTSLWGFIYPITYFLHMQTFVFKRPAVFPRSLAFVHVLL SFYFVGISFLKDIPDIEGDKKFGIHSFSMRFGKKRVFWICVSLLEMAFGVGLLVGATSSCLSNRIVTVLGHAVLASVLGF HAKFVDLESNASTMSFYKLVWKLLYAECFLIPFLR 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP_EUK 1 28 28 -
Phobius 1 146 146 -
PANTHER 26 435 410 1.3E-146
PANTHER 26 435 410 1.3E-146
TMHMM 143 165 23 -
Phobius 147 166 20 -
Gene3D 150 271 122 7.9E-6
Pfam 158 419 262 1.1E-34
Phobius 167 172 6 -
Phobius 173 194 22 -
TMHMM 175 197 23 -
Phobius 195 219 25 -
TMHMM 220 242 23 -
Phobius 220 243 24 -
Phobius 244 249 6 -
Phobius 250 269 20 -
TMHMM 252 269 18 -
Phobius 270 274 5 -
Phobius 275 296 22 -
TMHMM 276 298 23 -
Phobius 297 307 11 -
Phobius 308 330 23 -
Gene3D 313 432 120 3.2E-5
TMHMM 313 330 18 -
Phobius 331 355 25 -
TMHMM 356 378 23 -
Phobius 356 374 19 -
Phobius 375 385 11 -
Phobius 386 404 19 -
TMHMM 388 405 18 -
Phobius 405 415 11 -
Phobius 416 434 19 -
Phobius 435 435 1 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Molecular function Transferase activity, transferring alkyl or aryl (other than methyl) groups Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor).

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0341900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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