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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0343600 |
| Transcript ID | LotjaGi6g1v0343600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT1G61660.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q94JL3|BH112_ARATH Transcription factor bHLH112; TrEMBL-Plants: tr|I3SDL6|I3SDL6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0343600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65644019..65647486) extracted from Lotus japonicus Gifu genome v1.2.
CCTGTCACCATCACCATTATATTCAATATCAGCATACCCACAAATCTTAACAAATAAGGAAGAAGGCATGTATATGATAC TAGTTCTTCATATACTATTCTCTCTATGAATTCTTAAAAAAGTATGACAAAGAGAAAACAAATCTTAGACAATTTAATCA TATAAACAAATGCAAGTTAAAAAAAAACCGAGAATTAGAATTGGATTCAAAATCTCTCTCAATTGTCAAATCAACCCCTT GTAATTAATGTCAACCAAATTCCTGTTATCTCCCTGGACCCTTCAACCATTCCATATATAAAATCTCTCAACCCCCAATC TTTGTTAACCCAATAAGCTCCTACTTATGTGATAGTGATACAACAGTTTCAGAGCAAGCAACTTGTCAACAAGAAGAGTT CAAAGGCACAAAGGAGCTAGCAAATAGATCAGAAGAACATACAAATTCAGCAGACAAATAGCACCAATTTTCTTGACATG GCTGAGGAGTTTCAAGCTGGGATATGTGGTGAAACATGGTGGAATATGAATCCAACAAGAAGCGCGTTCCCTCTCATGAG TCCATCATCAACTTGTTCTGTTGCAGCTAATGATGCAGGGAACTACAGCACTTGGCAAACAGACTTTCTTGATTTGAGAG CAACAAGGCCTTGTGTTGCTGAAGAAACTAACAATAACAACATGGTTTCTGATGTTTCTCTGGGTTTCCTAGATGCTCAG AAGCCACAGCAGAGTGAATCAGCCAATGGAACTAGTAGCTTCTTGATTGATTCCACTTTACAAATCATGGGGTTTGGCCT CTCATCTCCAACTTCATCCAATTGGAATAACCAGTCTCTCTTGTAAGTTCTCAGAGTTAGATATATATCCATCACAAACT ATATATGGTATATAATTATCATGGTCCAAAGCTTCCACTAAGGAAGAAAAAGTTTGTCTTTTTTTTCACAAAAAATTCCT TTTCTCAAAGGAACTTCATCTTTTCTAGGTGTACTTCACCACTTCTTTACCTATTAATTAGATTCTCCTTGTCATCCACT TATCTTTTATGGATTTCTTTTTCTGCAGTCATTGTAGTGGAAGGCCACAGAGCATGGAAGAAACTGGTTTAGATTCTTCT GGTCATCATAATCCACAAGTTTCCTCTGTTGATGCTAATTTCAAGGCAATGAACCAAGATTTTGGCTTAGATCAGCAGGG TCTGAATTCTGTAATTACCAGCAGTGGTAATTTATCAGGTGGTTTAATCCCAATTAATGGATCAGGTTCCTATGGTTACC CTTCAAATTTGGTACAAAGCCTATATGATTCTCAACCACAACCTCAGAACTCATCACTTTTCACCAACCCCTCTATGTCC TTTTCATCTTCCAATGAGCTGTCACCAACATTCTCTTCCATTCTGAAACCTGCAATGCCAAAACAACAGCTTAGTGGATT GCACTTTTCCAATAGCACCCCTTTTTGGAATGCTTCAGCTGAGGCACTTCATGACATAAGAGCAGGAGTTTTTGCTTCAT CACAAACTCAATACCAAACGCCAAGTTTTGAAGAGAAGAAACAAAATCCACCTAGTGCTCTATTAAACAAGGTAAATAAT TGTGTATAATAATCCATGGCTTGTTATCTAGGGTTTATTTTATTTCACTTTTTGGATTAAGGGTAATAATGAATTGAATT GATGTAAACGCAGCTCAAGCGAGAAGAATCTCCAGATGCAGCGAAGAAGAGTACTTCTACTGAGCCTGCACTAAAAAGGC CAAGAATTGAGACTCCATCTCCATTGCCAACTTTTAAGGTATACTGTAGTGTTATTATATTTTCTTCATGATAACCAAAG TTTTTTAACTAGACAACTCCAAATCTTCTTCATTACTATCTTAATAGATTGATTTGATGAAATCAAAGTTTATATGTATG GACTTTCAGGTTCGGAAAGAGAAGCTGGGGGACCGAATCACTGCTCTTCAGCAATTGGTTTCACCTTTTGGAAAGGTGAA TTTATATGCTTGGTTTTTTCTTCATTTTACCTTAGACTATGATGAAATTTCAATATTTATCTTTGTATATAAACGTTAAA GGGTAAAAACTGACCACGTATATTGATCTTGATATATGTATAGACGGACACAGCATCCGTTCTTCACGAAGCCATCGACT ACATCAAGTTCCTTCATGATCAAGTCAATGTATGTTTCCATTCTTCGAAACTTTGTCCTAAAGAAAACCCTAATTATTTG GCTATCATACTTATGCATAATATTAATGATACTTAGACATACATTTTTTTTTGATAAGCAATACTTAGACATACATATAT AATCCAGTCATCCAACAAACATCCTAATTTTCTCTTTACATCTATAGTTTCTTATTACATTCATTACTTTTCTCTTCATA TTTTAATGATCTGTTGGATGTCTGTACTATATGGATGTCTACAAATTATCATTTTCTTATAGTTAAACTTAAAGAAAACT TTAACAAGAAGGCTTTTTTCGTGTGTTTCAATTAAATATAATTGTATTTTGTAAATTTCAGGTATTGAGCACACCATATA TGAAAAGTGGAGCTCCCATTCAAAACCAGCAGGTACTCCAAAATGATTGCATTTAGATATATATTACACATACACACACT TGCACACATGATTTTTAATAATTATTTTAGTGTGGATTTTGATGTATTAATTTGTATATCTTGAAGGGTACTTGTGATAA TGTGAAGGAGTCATCAGAAGAAGATTTAAGAAGGAGAGGGCTATGTTTGGTACCGATTTCAAGCACATTTCCAGTGACAA ATGAGACCACTGTTGATTTCTGGACACCAACATTTGGAGGCCCACCCATGGGTATGGGTAGGTAGAGAAAGCAAGCTGAA GAGACTCATCTCAGGCAGTGGATCAGAACTAATTAACGACCATGTTAACTATATATTTACATACATGTCATGTCATGTGT AAACTTAAAGGAAGGGATTGGTAAAGACAAAGGATCATGAAGGAATGGGCCAGGAAGAGAATATATACACTTTAGCTAGC TAGCTTTAGGTGCTTTAAGATTAATAGCTCCAATTAAGTTTTTAGAAATCCAACGTCGACGGTGGGGGCAGGAACAAGTG CTAAATTCAGCGGCATTTTACATTATATATAGTTTTTGTTGGTAGAAAGAAACAATATATATTTGCCAGAATTTAGCAGA TCATGGGGCTAGCAACCAAGCTAACACGCCTTTTGTTCCTGCTTATCAATATATTATCTGTATTCTGAATCATCACGCAC CAGCAACTTAATTTTTTTTTCTTAGCAGAATAAAGTGGATAATGTATTGTATCAATATTCATTTGTTTTTGGTTTAATTT AATTAACTACTCCTTTTTATTTGGTGGTGGTCGTGGCTCTCCCTTGTCAATTAGTCTTTGTTTTAGGGTTACCTTTAATT TGTTACTTCTCAAATAGTAAGGGCACGC
CDS sequence (LotjaGi6g1v0343600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAGGAGTTTCAAGCTGGGATATGTGGTGAAACATGGTGGAATATGAATCCAACAAGAAGCGCGTTCCCTCTCAT GAGTCCATCATCAACTTGTTCTGTTGCAGCTAATGATGCAGGGAACTACAGCACTTGGCAAACAGACTTTCTTGATTTGA GAGCAACAAGGCCTTGTGTTGCTGAAGAAACTAACAATAACAACATGGTTTCTGATGTTTCTCTGGGTTTCCTAGATGCT CAGAAGCCACAGCAGAGTGAATCAGCCAATGGAACTAGTAGCTTCTTGATTGATTCCACTTTACAAATCATGGGGTTTGG CCTCTCATCTCCAACTTCATCCAATTGGAATAACCAGTCTCTCTTTCATTGTAGTGGAAGGCCACAGAGCATGGAAGAAA CTGGTTTAGATTCTTCTGGTCATCATAATCCACAAGTTTCCTCTGTTGATGCTAATTTCAAGGCAATGAACCAAGATTTT GGCTTAGATCAGCAGGGTCTGAATTCTGTAATTACCAGCAGTGGTAATTTATCAGGTGGTTTAATCCCAATTAATGGATC AGGTTCCTATGGTTACCCTTCAAATTTGGTACAAAGCCTATATGATTCTCAACCACAACCTCAGAACTCATCACTTTTCA CCAACCCCTCTATGTCCTTTTCATCTTCCAATGAGCTGTCACCAACATTCTCTTCCATTCTGAAACCTGCAATGCCAAAA CAACAGCTTAGTGGATTGCACTTTTCCAATAGCACCCCTTTTTGGAATGCTTCAGCTGAGGCACTTCATGACATAAGAGC AGGAGTTTTTGCTTCATCACAAACTCAATACCAAACGCCAAGTTTTGAAGAGAAGAAACAAAATCCACCTAGTGCTCTAT TAAACAAGCTCAAGCGAGAAGAATCTCCAGATGCAGCGAAGAAGAGTACTTCTACTGAGCCTGCACTAAAAAGGCCAAGA ATTGAGACTCCATCTCCATTGCCAACTTTTAAGGTTCGGAAAGAGAAGCTGGGGGACCGAATCACTGCTCTTCAGCAATT GGTTTCACCTTTTGGAAAGACGGACACAGCATCCGTTCTTCACGAAGCCATCGACTACATCAAGTTCCTTCATGATCAAG TCAATGTATTGAGCACACCATATATGAAAAGTGGAGCTCCCATTCAAAACCAGCAGGGTACTTGTGATAATGTGAAGGAG TCATCAGAAGAAGATTTAAGAAGGAGAGGGCTATGTTTGGTACCGATTTCAAGCACATTTCCAGTGACAAATGAGACCAC TGTTGATTTCTGGACACCAACATTTGGAGGCCCACCCATGGGTATGGGTAGGTAG
Protein sequence (LotjaGi6g1v0343600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEEFQAGICGETWWNMNPTRSAFPLMSPSSTCSVAANDAGNYSTWQTDFLDLRATRPCVAEETNNNNMVSDVSLGFLDA QKPQQSESANGTSSFLIDSTLQIMGFGLSSPTSSNWNNQSLFHCSGRPQSMEETGLDSSGHHNPQVSSVDANFKAMNQDF GLDQQGLNSVITSSGNLSGGLIPINGSGSYGYPSNLVQSLYDSQPQPQNSSLFTNPSMSFSSSNELSPTFSSILKPAMPK QQLSGLHFSNSTPFWNASAEALHDIRAGVFASSQTQYQTPSFEEKKQNPPSALLNKLKREESPDAAKKSTSTEPALKRPR IETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIDYIKFLHDQVNVLSTPYMKSGAPIQNQQGTCDNVKE SSEEDLRRRGLCLVPISSTFPVTNETTVDFWTPTFGGPPMGMGR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 437 | 437 | 3.2E-106 | – | |
| PANTHER | 1 | 437 | 437 | 3.2E-106 | – | |
| MobiDBLite | 119 | 147 | 29 | - | – | |
| MobiDBLite | 296 | 327 | 32 | - | – | |
| MobiDBLite | 297 | 315 | 19 | - | – | |
| ProSiteProfiles | 321 | 370 | 50 | 12.074 | ||
| CDD | 331 | 374 | 44 | 3.25753E-6 | ||
| Gene3D | 331 | 383 | 53 | 6.7E-6 | ||
| SUPERFAMILY | 331 | 384 | 54 | 1.06E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi6g1v0343600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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