Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0344000 |
| Transcript ID | LotjaGi6g1v0344000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transmembrane protein, putative (Protein of unknown function, DUF538); TAIR: AT1G61667.2 serine protease, putative (Protein of unknown function, DUF538); Swiss-Prot: sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610; TrEMBL-Plants: tr|I3SVU2|I3SVU2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0344000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65672165..65673809) extracted from Lotus japonicus Gifu genome v1.2.
ACATAGAAAGCATCACAAATCGTAAAGGCAAAGTTGTTTTCAACCATATCATTATTATAATTATATAGTTTTATATCCAT CATCAGCATCACCCACCTACTAATTTTCATTATCATAATTGATTAGAATGCAGTAAACGTTAACTTTATTCCATTTCCAA CTTTGGATCTCAATTAGGCTATGCTTCCTCATTACATTTCACAACTCATAGGTTGTAACGTAAGGGTAGTTTGTTCATTT CACAACTCACATGTACCATGATTCATGTAATGCCAACCTAGAAATTCTCATCAACTGTCCTCTCTGGCTCCCACTTCCAA TCATAGTGTTCAAAATATGTACTACAATAAAAATAAACCCTGTTAAAACCTCATGTACCAAACAAAGGTGTCTCTCTATC ATCTCTATTAGCTATGGCACTCAGAATGAGATTTAGATCTTTTGAAGCTGCTATTGTTGTTGTTGTTCTTGTTCCACTCT TACTCTCAGTGACAGTGGCAGCTGCATATTCTTCTTCAATTCATGAGCTGCTCCGCAACTATGGCTTGCCGGCGGGGCTC TTCCCGGAGACGGTTAAGTCATACAATTTGGACCAAACGGGTGTTTTGGAGGTGAAGCTGGATCAACCCTGCATGACCAA GTATGATACTAGAATGTTGTTTGAAACTGTGGTTCGGGCTAACCTCAGTTTTGGTCAGCTTAAGGGGTTGGAGGGTTTGT CTCAAGAAGAGCTTTTTCTATGGCTGCCTGTGAAGGGTATCATTGTGAATGATCCATCATCAGGTCTCATTCTCATTGAT ATTGGTCTTGCCTATAAGCAGCTCTCTCTGTCTCTCTTTGAAGTTCCCCCAATTTGCAGATCCCAAGGTACTCTTCTGTC TTGTGTGTGTGTATTTATAGCTGTGTTATTTATTGATGATGACTTGCAATTTGAATAGAAATCACTATGTGAAAACATAT GCATGCCATTTTCATCTCATTTGTACAAGTTTCCCTTTCTGAGAATTAATTCTGACACTTAGAAGCTACTCACATAAATT TTTCCTCAAATAAATTGTCTTTAGGATCAACTATTGAAGGATTTCTAAACACATACTAATACAGATTACAGAATGTATTC CAATTCTCATCTATTTTAGCTTCTAGCTTCAGAGATTTTGTTATGTATGTAGAGTTTTGATTTCAAACATTGGATGTGGC GTGCAGGTCTTTCAAGGAATATTGAAGGAAGGAAGAGCTTTGGATTTCAAGATCTAAGATAAAAGTTTGTTTAGTTGAAA AGATGGTCTCTTCTTTCTCTTTCCAATTTTGTTTTTTTCTCTCTTTCTTTTTAAGATATGAGTATGTGTCAATGTGATGT AATGTGCATATAATAGATACTGAGAGGCTTGTGACTAAACTGGGAATCAGTTGAGGGTGGAAAAAGGAACTGATAGAGGT GTTTATTGTAAAAAATGTTTTACCAATTTTGTGTGCAACTATTTTCTGATGTTCAAGGTATCTTATCACATCATTTCTTT CTTTCCTTTTGTTTTTTCTTTTCACTTTACTATGATCCTATGCTGAAAATACTCAGAGAATATGCTAATGTTGACTGTGA TTAGGATGATTGCTGAAACCAAATCTACTTTACCTCTCGCATTTT
CDS sequence (LotjaGi6g1v0344000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACTCAGAATGAGATTTAGATCTTTTGAAGCTGCTATTGTTGTTGTTGTTCTTGTTCCACTCTTACTCTCAGTGAC AGTGGCAGCTGCATATTCTTCTTCAATTCATGAGCTGCTCCGCAACTATGGCTTGCCGGCGGGGCTCTTCCCGGAGACGG TTAAGTCATACAATTTGGACCAAACGGGTGTTTTGGAGGTGAAGCTGGATCAACCCTGCATGACCAAGTATGATACTAGA ATGTTGTTTGAAACTGTGGTTCGGGCTAACCTCAGTTTTGGTCAGCTTAAGGGGTTGGAGGGTTTGTCTCAAGAAGAGCT TTTTCTATGGCTGCCTGTGAAGGGTATCATTGTGAATGATCCATCATCAGGTCTCATTCTCATTGATATTGGTCTTGCCT ATAAGCAGCTCTCTCTGTCTCTCTTTGAAGTTCCCCCAATTTGCAGATCCCAAGGTCTTTCAAGGAATATTGAAGGAAGG AAGAGCTTTGGATTTCAAGATCTAAGATAA
Protein sequence (LotjaGi6g1v0344000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALRMRFRSFEAAIVVVVLVPLLLSVTVAAAYSSSIHELLRNYGLPAGLFPETVKSYNLDQTGVLEVKLDQPCMTKYDTR MLFETVVRANLSFGQLKGLEGLSQEELFLWLPVKGIIVNDPSSGLILIDIGLAYKQLSLSLFEVPPICRSQGLSRNIEGR KSFGFQDLR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 31 | 31 | - | – | |
| Phobius | 1 | 29 | 29 | - | – | |
| SUPERFAMILY | 10 | 150 | 141 | 1.96E-35 | ||
| Phobius | 12 | 24 | 13 | - | – | |
| TMHMM | 12 | 34 | 23 | - | – | |
| PANTHER | 15 | 154 | 140 | 2.0E-67 | – | |
| PANTHER | 15 | 154 | 140 | 2.0E-67 | ||
| Gene3D | 23 | 145 | 123 | 3.4E-22 | ||
| Phobius | 25 | 29 | 5 | - | – | |
| Phobius | 30 | 169 | 140 | - | – | |
| Pfam | 37 | 143 | 107 | 1.1E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0344000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…