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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0344500 |
| Transcript ID | LotjaGi6g1v0344500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transmembrane protein, putative (DUF1218); TAIR: AT4G21310.1 transmembrane protein, putative (DUF1218); Swiss-Prot: sp|B1AUC7|RHG36_MOUSE Rho GTPase-activating protein 36; TrEMBL-Plants: tr|A0A151RKS4|A0A151RKS4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0344500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65712911..65718389) extracted from Lotus japonicus Gifu genome v1.2.
AAACTATCAACAATTAAGGTATACACACCTAGCTATCACATAATCGATCTTCTTAATTAGTGTATCAGGAATCCATGGCC AAAAACTTTGGTTTCCTTGTCTGTATACTTGTCATGGTGTTGGATATTGTTGCTGGCATACTTGGAATTCAGGCAGAAAT AGTTCAAAACAAGGTACTCATTATATCTAGCTTGAACTCTCATTCATTCATTGTTGCTAAACATTATATTAATTAATCAT TAATCTTTTGTGATGATCATCAAAAACAGGAGAAGCAAATGAAGGTGTGGGGATTTGAGTGTAGGCACCCTAGCTATCAA GCTTTCAAGCTAGGAGTTGCTGCTCTCATTCTCTTGGCTCTGGCTCACACAATTGCTAGCTTGCTTGGTGGCTGCATTTG TGTTAGATCCAGAGAACAATACCAATCAGCTACAGCCAACAGACAACTAGCAGTAGCTTTTCTCATATTCTCATGGTGAT TTATTAAGCTCTTTATTAATTTTAATGTTAAATCCCTTTTTCTTTCAGCAATTGTAATGGTTAGAAATATAACCATAACC ATTGAATGCGTCATTTACACGAGAGCTTAAGTTTTTGGGATTACCGACTCATAACATGGTATCAGAGTCTTTACAACTAA ATGATTTAGAGTTCGATCATTGTCGCACAAAATTCTTAGACTAAAATGTTAAATTTCAACACATGGTAGATGAGTGTGTA TTATTCACGCTTCAAACCTAAATGACTTTTGCACGAGAGAACATGTTACAACTATAATCATTCATGGTTTTTTACTCAAT AGAACCTTTTGGGATAATTGGTTTTTCACACTAATAGTCGATGTTTGAATTACCCTAATACACTAGATGATGAACATGTT GGTGTTGTTAATTTGCAGGATTGTATTAGCAGTTGCATTCTCTATGCTGATCATAGGCACATTGGCCAACTCAAGATCAA GAAAACCTTGCGTGTTGTATAACCACCACTTCCTATCAATTGGTGGCATCCTGTGTTTCATCCATGGACTCTTCACTGTT CCTTACTACGTTTCTGCCACAGCCACCAGAAGGGAAGAAAAGAGGCAACCAGGAAACCCCGGGCCCGCCATAAGACACAC TTGATAATCATCATTTAATTATCATAACCAAAAGATTATACTATATAATACCTCCATTTCAACAAAAATATTCAAATTGA TAGATGTGATGTTTTGTTTATTCTTTTTCACTATATAGAATATTTATTTGATTGAATGAAGAGTATGATTGTTTAGTGAT TTATAAACATTTAGAAATAATAATATAAAAGTCATAATGTATTAAAAAAAACCCTTCTGTAACCAATGTGGTTTGAGGGT TGATCATATCTTTAATCAATATGGACTTCTAACACGTACAATTCAGTTATGTAATATCTGAAATTTGGAGACAAGGACAC CGTCGTTATCTGCATAGAGCCATTCTCCTTCATGAATCGTTGCTCCTGCAACATGAACAGGGACATGCTTTTTTCCGGTG CCTTTTTTACCAGGCCTGAGAGGATATGAACCCAAAGCCATCACACCGATATTGCCACACTCATAAATGTCATCCACATC TCTAACACAGCCATTTACCACAATCCCAGCCCAACCATTGCTATGTGCCAACTCCACCAAATGTCCTCCAATCAAGGCAC GCCTCATGCTTCCTCCTCCATCAATAACCAAAATTTTTCCTTCTCCTTTCGTTTGAAGAACCTCCTTAATCAATACATTG TCTTCAAACACCTTCACAGTTACAATGGGTCCGGAGAATGTTCGAGCCTGCCCATAACTCTGAAACACTGGATCTAATAT CCTCACTTCGCCACTTGCTATTTTTTCTGTATTAACGTCACAAATATCTGCAATTGCTAGACCACCCATGCTACTCCTGC CGGCAAGAATCAAAGAGTTATTACAAATTAATCAGAATTCAAAATGCTTATTTTCGAGTTGCACCATATTGAATGAAGAA ACCAATGGCAATTGCTAGCAGGTTTGATTGATTCATACTATTCTTTTCCTCTTTCTTGTATCTCATTTCCACCAATCATA TTTTTATTACATCACATATCATATCAATAATTTCTTTTTCTGTGGTTGTTATTTCTACCATAAACTTATGCATTGGTAGT CCTAATCATGGTTTTAGAAGGAAAACAGGGTTTTTATTGTTAATGACACATTGACACATAAGGTTTGAATTGGAGATAAC ATGTTTGGTATGGTGCTTAATTATATAGGAAAAAAAACAAGTATACTAAACAAATAACCGGTTGATGCTTACGCCGAGAC AGAGAGAGGAGAAATGAGTTTCTGTATCTTCAAGTTCAATCCAGCACCGCAAGAAATGTTGAGGGATGAGATTGGTCGTC AAGTCTTTGTTTGATTTTATAGAAAAACTAGATGTAGTGACAATTATTATTAATTAATAAGGCATGCACAAATCAAGTTG ATTGAGTATGGGCAATATCATGCTTTAAAAAATTTATTGATCTACACTAATTATCTACCGATTTGAATTTGAATTACTAT TATTTTCAATTTACTAATAATTGATAGCGCAATTAAAAGAGAAAACGTATTTAAAAGAGATATTGCAATTAAAGAAATAT CAATGTGAGTGCCATTGCAGAATTAAACGAGATATTAATCTTAGCACAATTAAGGGATGACCACGTAAATTTTTAGTTTC AGTTTTGAATTTTTTTTAAATCACATTTAGTCATTTCTCATATAATTGAAGGAATTGATGTTGATTGCTTTGGAAATTGA ATATTTGCTTTGTTGCCTATCTGCTTGATGATGAGGAAGTCTAATTTAGTTGGAAGGGAGGCTTAAATGAGATTGATATT ATATTTACTATGTAGTTCTCCTTGGAAATTACCTTTTGATATGTAGTGTCTAACCCCTTTTTCCTCCCCTTTTTCGATCT GTCTAATTCCTCTCAAATTATTGCACCGAACAAGGAGATTTCCCCATAAAGTTGTGAGCTTTACAGTTGATTGGGGGTGG GTATGTGTGGTGGCTCCTGCAAATGAAGTTTGATGTGGGTCAAGAGAGAGAAAAAGTCTTAGTGCTGGTCTGGGACTATT GATGGTGGAGACTGGGGTGGGCGGAAAAGTTAGGTTCTGGAAGTTGAAGGTTGAAGGTTTCAATGGTGGCTGGTGGTGGT GCGGTGGAGAGAGGAGCAGAAGAAGAAGAAGAAAAAGGGAGTTGTAGTTGTGAGGTGGTGGTGTTGTCAACATATGAAGA AGAGGACTTGAGGAAGATGGAAAGTTATTTTATGATGCTGATAGAGTTAGGGATTAATTAGATTAGAGATTAATTAGTTA GGTATTGATTTTGGGATTTAGTTGTTAATTAAAATTTATTAAAACAGCTGGCATAAAGAAAAAGAAAAAATACATAAGCA TGAAACACGCGTAGGGATTTATTTATTTTACAAAAAATCCAAGAATCCCAAATTAGAAAAAAAAAATCATTGTCTTATTT TCATACGTCATACAATTTCAGGGCTCTCTAGAGTATTTAAGCCTTGAAACATTAACATAATACTGTGCATAGTGCGCTAG CTATCACTACTACAGAAATGACATTTTGCCACGCCTCAATTGCCACGGTTATAGGCGGAACCGTGGCAAAAGCTCAATTG TCACGGTTAGAAGCGGAACCGTGGTAATAGAGGACAATATTTTATTATTTTTTTAAGGGACCGTGACAATAGATACCCCT AAACCTTCTCCCCTCTATCCCACTCTCCACACTCCAACCCTTCAAAACGACGGCGGCAGACCCAAGCTCTCTCTTCTCGA GGTCGACCTCGCAGCCTCTCTTCTGTTCACGGCGACGGTACCATGGTCTCGCTTATCCTCTTCGTGAGGTCAAGCTCGTC ACTCTTCCTCTATCATCTACAGGTCTCTGTCGCGTCTTCCTCCTTCGTTCTTTTGTTCTCCATCGCGTCGTTCTCTGTGG TTGTTCTTCGTCGCGCCATCGCCCATCATCGTCATGCTAGAGTCGTTTTAGGTATGCATTTCTGTCTCTCACACTCTCTC CCTCCCTCTATCTCTCACACGGCTATTTTATTTGCTAGCTAGGGTTTCAAGGGACCAAGGTTAGAGAAGGAGTGAAGGAA ATTTTGTAATCTTTTTTGAATATGATGATATGAGTAGTTGAAATTGATTGTATAGGTTCGTATCTGTGTTTATTCGATTG TTGAAGTGTGTGAATGTCATAGATATACTTGGGAATTTCTTTGAATCAATTCAGTCGAAAAGTGTTTGATTTTTGAAACT ACTAATCAATTTCTTGTAATTTTCTTTTTTATGAGCAGTGGCTGCTCTCCAGGACCTATACAGAACCTTGAACTACCCAC CAGAGCTTCAAGGATGGAATGGTAGTGATCCTTGTGTATAACTGATGGACTGGGACACCAGGCTCAAAATTGCGATTGGA TCAGCCAAAGGACTTGCTTATTTACATGAGGATTGTAAGTGATATGCATGCTTATCTTCTCTTAAATAATCAATTTGTGT AGACTTTTTTTTTGTTAAAAGGATGAAATCATTGTTATTAACTTATGGGAAACATCAATCAGGTCACCCTCGCATCATTC ACCGAGACATAAAGGGTGCAAACATTCTAATTGAAAACAACTTTGATGCCAAAGTATGTATATCAAATTTCATGAGCTAG AGATATTTTAAGAATTGTGGCTCTTGATTCCTATTGGTAATCATTGGTTTTATCTATTCAGGTGGCAGATTTTGGATTGG CAAAGTTTAATCAAGACACTAACACATGTTTCTACTTGTGTGATGGGAACATTTGGGTAAAATACTAATAAACCAAACAA TTCACAAAGTTTTATATCATTATATGTGTATGTTTCTGTCTGCTAATACCAAATTGGTCTAATCACTTGGTTTCTTATTC AGGTATTTGGCTCCTGAGTATGCATCAAGTGGCAAATTAACTGTGAAATCTGATGTTTTCTCATTTGGTATCATGCTATT GGAGCTCATTACAGGACGACGGCCGGTAGACAACACTGGTGATTATGAAGAGGATAGTTTGGTTGATTGGGTAAATTACT TCAAAGTTCTGAGCTCATTTGCCATTCTTGTGTGGAGTCCTTTAGCATGCTCTGGGTCATCAGTTATACACCTGTAATGA AACAAACAACTCTATAGTGTAGAGTAGACAAATTAAATTTTATCTATATTGGGTTTCATCCAACTAAATTTAATGTGAAA TCTCGGGTCATCAACCAAATTTTGTTTGAAGGAGCAGCCAAATAAGTGGGGCTTTATGAGTTTCCTAGTTTACTTTGTAA CTTCGTCCTCATGCCAAATTATATTGTTTCTAATTCATCAAACTTGCATTTCCTTTGGGGAAGAACTGTGACTTGTTCAG AAATATTTTGACTTTATCTTTGCTGGTGAAGCACGTTGT
CDS sequence (LotjaGi6g1v0344500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAAAAACTTTGGTTTCCTTGTCTGTATACTTGTCATGGTGTTGGATATTGTTGCTGGCATACTTGGAATTCAGGC AGAAATAGTTCAAAACAAGGAGAAGCAAATGAAGGTGTGGGGATTTGAGTGTAGGCACCCTAGCTATCAAGCTTTCAAGC TAGGAGTTGCTGCTCTCATTCTCTTGGCTCTGGCTCACACAATTGCTAGCTTGCTTGGTGGCTGCATTTGTGTTAGATCC AGAGAACAATACCAATCAGCTACAGCCAACAGACAACTAGCAGTAGCTTTTCTCATATTCTCATGGATTGTATTAGCAGT TGCATTCTCTATGCTGATCATAGGCACATTGGCCAACTCAAGATCAAGAAAACCTTGCGTGTTGTATAACCACCACTTCC TATCAATTGGTGGCATCCTGTGTTTCATCCATGGACTCTTCACTGTTCCTTACTACGTTTCTGCCACAGCCACCAGAAGG GAAGAAAAGAGGCAACCAGGAAACCCCGGGCCCGCCATAAGACACACTTGA
Protein sequence (LotjaGi6g1v0344500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKNFGFLVCILVMVLDIVAGILGIQAEIVQNKEKQMKVWGFECRHPSYQAFKLGVAALILLALAHTIASLLGGCICVRS REQYQSATANRQLAVAFLIFSWIVLAVAFSMLIIGTLANSRSRKPCVLYNHHFLSIGGILCFIHGLFTVPYYVSATATRR EEKRQPGNPGPAIRHT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 176 | 176 | 2.0E-93 | – | |
| PANTHER | 1 | 176 | 176 | 2.0E-93 | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| Phobius | 17 | 27 | 11 | - | – | |
| Phobius | 28 | 50 | 23 | - | – | |
| Phobius | 51 | 72 | 22 | - | – | |
| TMHMM | 54 | 76 | 23 | - | – | |
| Pfam | 58 | 145 | 88 | 9.6E-22 | ||
| Phobius | 73 | 92 | 20 | - | – | |
| Phobius | 93 | 114 | 22 | - | – | |
| TMHMM | 96 | 118 | 23 | - | – | |
| Phobius | 115 | 133 | 19 | - | – | |
| TMHMM | 133 | 155 | 23 | - | – | |
| Phobius | 134 | 154 | 21 | - | – | |
| Phobius | 155 | 176 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0344500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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