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LotjaGi6g1v0347700.1

Overview

Field Value
Gene ID LotjaGi6g1v0347700
Transcript ID LotjaGi6g1v0347700.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Zinc transport protein zntB; TAIR: AT2G04305.1 Magnesium transporter CorA-like family protein; Swiss-Prot: sp|Q6D5P8|ZNTB_PECAS Zinc transport protein ZntB; TrEMBL-Plants: tr|A0A151S108|A0A151S108_CAJCA Zinc transport protein zntB; Found in the gene: LotjaGi6g1v0347700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:66040956..66046085) extracted from Lotus japonicus Gifu genome v1.2.

GTATCATTGAATGTGCCTAAAGTAATATTTGATACTTGTAACCTTGTTGCCAGTATATATTAATTTAATATATTTAATAC TAAATTTCCGGCACCGACTTACAGTTAACAGAGAAGAGAGTTTTGGAAGTGGGACTTTCGAATTCGGATGGGATGAGATT AATCAGATTATAGATCATAGAATTTGAAAGGCAAGTTTCATAGAAATTAAATAACACTTCACTTATTATTATTTTATTTT TATCACACGCACAAATTTTCCCCTTCCCTTTGAACCTTTCAATATAGTTTCATCGCTTCACCCGAATTCAACAAGGTAAT GCACTTCTTCGTCTTCACTTCTTTTTTGATTCATAATTGTATTACTTGCTGGCCAGAGTAGAATTTGATTTGAGCCACGT CAAACTTTGAAGCAGGGTTTTGAATTTGATTTGATTCATAGTGCACTTGATTGGGTTTGTTACAACATTTCAGTTATTTT GGTACAATTCATATTGGTTTGTTGACCTTGGTTTTGAGATTGCAATTTGCAAGTAATATTAAATCAATAGCATATAGGCT GTTTTAAAGTATATTAGATTTGAAATGCCAAGTTTATGAGATTAAGAAGTTAGAGTTTCTGGGTGAAGTTGTTTGGTATC ATTTTTTGGTTTATTAGTTAGTTGGAAGGCTATTTTGATTTTGGGGTAGCTGGTGAAAGTTATGGAACTAGCTCAGCGGA GAGTATTGGAGAATGGCGAGGCGGAGGAGATGGAAGTTGAGATTCCGGCTGAAGAGCATCGAATCTACCATTCCCATCCT GCAAGCTTCGTCAAGAAGAGGGCTTATGTATTTGATGGTTTAGGGAATTTTTATAATAAGGATTGGGATCTGGCATACCT TTATAAAAAAGACGAAAGGGAAACAGTTGGAGTTGAAGGCCGAGAGAATGAGTTTTCTTGGTACCATGTAGAACTCCCTA AAGGAAATCAGAAGTTGTCGCAATCCGCGCAGGACTTGATCGGTGTTCTCTGCCCGCCGTTGAAGCTACAAGATATTCTC TCGCTTGTTAGTAATGGACCCTTTTGTGCATATGTAGATGGGGCGCTTGTCTTCCGGGTTAATTCACCAGGACCTCCTTC TAGTGACTTTACATTTAGAATTGCTGCTAGAGTTACGGAGAATTCGGTAATTACTGTGTCTTTGGGGCGTGTTCCCCGGC TAGGTTTCTCACGCATGGGCGAATCTCTACTTTCGGAAATTCCTAGTGTTGAAAGCTCTTCTAATTTTAGAGGTCAGCAG AAGGAAAAAAGTGGGACTGTGATTAAGGAGCATGTTCTTGAATTCTTGTTAACTATGAACCACTCCGAGGAAGCTGACAA TCCAGTGCCTAGATCTGTTCCAAAACTTGTAGTTCACATAATTGATACACATGTAGATCAGCTTCAAGATATTGTGACCA AGCTTGAGATAGAGTTGGATTCTGTGGAGCTTGACCTGGATAAAGGTAATTCCCATTATACACTCCTTGATCCCCTGTAG TCTCATTCCTTAACAATGGCATACACAATCATAATTTCATTTGTTTGTACCATTCATAGTTTAATGGCTTTCTGTATATA TTTATCCTCAAATTTAGATCTCTTTATATGTCAAACCTTACTAATTCATGCTATTCTTAATTACTGCAAGTTTGCCTTAG TTTCTAGTAAATTGACTTCAAAAAAATAGTGATAGAAGTTAGATGTACTTTGTGGTCTTTCATTTGTTGGAGGCTGATTG GAACTGGACCAGACTAAGAAGAAAGAAACTGAAATTCTATTGAGTTCTTCCTGGATTCCCTTTGCTCCAATTGGTGAAGA GAACTAGCTCAAATTACTATTACAGAAGAAAGTAGAAACTGAACTGAAGTAATATACCTGGCTTTTGAGAGGCCAATCCT CTCCCAAATCTGTATACAACCGAATGAATGACCCCCTCCCTGAACTAACTGTCTATTTATTAACATGCATTTTGACTCTA GCTAAATTTTTTGATTGGTTCACTTCATATATTTTAACTCTAGCTAAATTTTTTGATTGGTAGTTCAATATTTGTGCCTT TAAATGTTTACCACTAATATGAAATGATGAAGGCCTTTTGATTTGGTGGAACCTAAAGCTTATCTTCAGAAAAATATGGT CATATATACTTAAATTTTATTTCATCTGAGTGGCTTTTATGTATAAACTGAAATTTCTGTTTCCAACTTGGTTCTGTTCA ATATGCCTATACACTTGTTCTTTGATTGCAATATTTAGAATTGTTTTATGGAATTAAATTAAGGAACAACCAATCTGCTT GAGTGTAGGTGGTTATGCTCTGAAGAAACAAATGCTAGATGACAGAAGATTCCCCAAACTTCACATTAATTTGCAGCGTC TCCTGCAGGTGATACTCTACTCATTTTATGCTTTCATTCAGCTTTAATTTATAGACCCTTGTGAGGAGATACAAAAGGCA TTAAGATGTAGTATAAATATTTTTTACTAGAGAAATGCTAGTTACACAGTCTCTAGTACACTTTTTTCACACACTCTTTC TTATTGGTCCAAATTCATGTGTTCTACTAAATAGGGATTGTAACCCACCAAACCAAGAGTCAGACCCTTATGGTTCAATG GATCTCATGTGTTTGAACCAATGAGAAAAAGCGTGTTAGTTGTAAGAGCATGTTAGAGAATGTATAGAAAACTCATTACA TTAGTGATTCATAAATGGTTCAACATTATAGCTATGCAATCAAGCATAAGGGTTGTGGGTCTCATCAACATAGTATATAC AAGGTTTTAGTGTTTGCCATTTTCCTTTCAGCACAGATCTGACAGCTTACAAAAAATCGTTTTAAACAAAAAAGAAGACG GCATAATGGAAGCATAGTTATTATTGGAAAATGATTTGTGTTAGATGGAAAAATTAGCAGGGAAAGAAAATAATGTCAGT CTGAATACTCAAATTACAGTAACAAAGAATGTTACTGTCATGAATATGGTGTCACAGCCTCTATGACTAAGAGGTCTGGA GTTCATTCCTTGTTGCCTCCCTCATTTTCTAATAAAAAAGTAGAATTTCACGCACAAAGGTAGGTGGGCTGTGCATTATC CACACAAGAGCCATTAGGTGGATGATGAAGTTTGCACCTCCATGGCTGACTAACAAATTAAGGGCAGTGGACTCTTGTGT AAGGGGGAGTAATGTGATAGAAATATAATATAAAACTGTGCACTTGTCTTTACTGTTTCCCATCTTATTTGTTCTCATCT TCAAATCACACTGTATGGATTATACACTTCCGTTTGGTTTGAAACCTTACCACAATTGATTATATTCAGGTGATTGGTCA TGGGGAACAAGTATATCTTCGTGTCAAAGAAAAATGCTCTTCGAGAAGATGGTTTCCAAATGAAGACATTAACACCCTTG ATGAACTAATTGGAAGGTTAAGGAGGATGAAGGAGAATGTAGGGTTTATAGTAAATCGTGTCACAGCAATTCAGGCCGGT CTTGATAGCTGGCAGTCAGAGCAAATTAACAGGAAACTGTACTATCTTTCATTCCTTTCAATAATATTCCTCCCTTTGTC CATCATCACAGGAGGTTAGCAATCTGATTCTTTATGAACTTTAATTATCCACATCCGATGGCAATACTGTTTGGTTTTGA TTCTTAGTCTTTCATTGCAGTCTTTGGCATGAATGTTGGAGGAGTTCCATGGACAGGTCAAAATGCCCCAGCACTGAAGG ATGGTTTTCGGAACGTCATGTTTGTCTGCGTTGCTATGGTACTTCTTGTACTGCTCTGTTTCATTTTCCCAGCTCTTTAT TCCCATGTAGCTGCTGCATGGCGAACAAAGAGAGTTCTGGGAAGAAACTGGTCATTCAACAAGAAGTCATTGCTCAGGAG ATCATTAAGGACAGAAGATTCACAGAGAGGGGGCTACCTTCGGATTTAATGGTGACAGTGTCTATTTTATTTCATTGTGC CATTTCATTTTATAAGTGAGTCATTGTACTACTCTGCCATGATAGCATGTTTGGATCAACTTCTCTTTTCTCCGAATCAA TTCTGGTATCTAGAAGCTACTCACAGAAGCTTCTCTCCAGAATTGATTTTGGCTTTAGAATCAATTGTAGAATGACTTCC AAACATGCATCCATCACTTCCTTCAGTTTTCTAGAATGTCTCACTTGCAAGCAATTTTGATCAGCTGGTTTTCAATGGCT GGTTAAGGAGAAATGAATAACCTGATATTAGTTTTCAGTACACACGCACACTTGAAAGCCTAAATGGAATCCTCTATGAA GGGTTGATTCTCTGGTAGAGTAAGATGGAGATTGTGATCAAGGCAAGCTCATCGTTTATTCTTTCATTTTTTTATTTCCT CCTTGTGAAGGGGCTATGTGGACTCATCTCTTCATTCATTTTTTTTGGCATTTATGGCAACATTTTTAACCTGTACAGTG TACTTCGTTTGGTTAACTGCAGATTCTCCTCTCAGATTATTAATTGTCACACCATTTGAAGCATTTTTTGGACCCCAAAA TAGATTGCAAATGAGTCAAATTTCTTCCATGGTTAGACAACAATAGTGTTCTAATTACTATTTCCGTGGCCTTTTTCTAT GCTTAATCCTCCACCTTCTTCACAACAAATTGTTTTATTTCAGTCTTAAGATGGCAGAAAAGAACCAAACAATTGTAATT TCACTGTGATACTTTTCGAGATATTGTGTCCGTGGGGGAAGTCTGAAAGCAGCTAGACTGAACCCCTATGAATCGAAGTG TAGCACACTCCCTTTAACTGTAAATAATCTGAGAATAAAATAGCAAAGGTTAATTTTTGGGATTGCATGTTACTCATTAG CTACGGGGTAGCTGTAGGGATTTTTGTTTCTTCAGGATTTTACGGAAGTCTCATTTATGCGATGAGTAGTTTGTTAGTCT TTGTTCTTGTTTTGGGCTTGGGCTTGACCGTAATTTTTTAAAAGAAAAATAATTGCAAAGGTTAATCTTGTTTTATGAAG AAATTTTTAGAGCATAAATTCACAAAATAGACTTTTTCTTTTAGATTGGAAGCAACAAAACAAACAGAAAACCAAGCTAG TAATTCTCCA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0347700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAACTAGCTCAGCGGAGAGTATTGGAGAATGGCGAGGCGGAGGAGATGGAAGTTGAGATTCCGGCTGAAGAGCATCG AATCTACCATTCCCATCCTGCAAGCTTCGTCAAGAAGAGGGCTTATGTATTTGATGGTTTAGGGAATTTTTATAATAAGG ATTGGGATCTGGCATACCTTTATAAAAAAGACGAAAGGGAAACAGTTGGAGTTGAAGGCCGAGAGAATGAGTTTTCTTGG TACCATGTAGAACTCCCTAAAGGAAATCAGAAGTTGTCGCAATCCGCGCAGGACTTGATCGGTGTTCTCTGCCCGCCGTT GAAGCTACAAGATATTCTCTCGCTTGTTAGTAATGGACCCTTTTGTGCATATGTAGATGGGGCGCTTGTCTTCCGGGTTA ATTCACCAGGACCTCCTTCTAGTGACTTTACATTTAGAATTGCTGCTAGAGTTACGGAGAATTCGGTAATTACTGTGTCT TTGGGGCGTGTTCCCCGGCTAGGTTTCTCACGCATGGGCGAATCTCTACTTTCGGAAATTCCTAGTGTTGAAAGCTCTTC TAATTTTAGAGGTCAGCAGAAGGAAAAAAGTGGGACTGTGATTAAGGAGCATGTTCTTGAATTCTTGTTAACTATGAACC ACTCCGAGGAAGCTGACAATCCAGTGCCTAGATCTGTTCCAAAACTTGTAGTTCACATAATTGATACACATGTAGATCAG CTTCAAGATATTGTGACCAAGCTTGAGATAGAGTTGGATTCTGTGGAGCTTGACCTGGATAAAGGTGGTTATGCTCTGAA GAAACAAATGCTAGATGACAGAAGATTCCCCAAACTTCACATTAATTTGCAGCGTCTCCTGCAGGTGATTGGTCATGGGG AACAAGTATATCTTCGTGTCAAAGAAAAATGCTCTTCGAGAAGATGGTTTCCAAATGAAGACATTAACACCCTTGATGAA CTAATTGGAAGGTTAAGGAGGATGAAGGAGAATGTAGGGTTTATAGTAAATCGTGTCACAGCAATTCAGGCCGGTCTTGA TAGCTGGCAGTCAGAGCAAATTAACAGGAAACTGTACTATCTTTCATTCCTTTCAATAATATTCCTCCCTTTGTCCATCA TCACAGGAGTCTTTGGCATGAATGTTGGAGGAGTTCCATGGACAGGTCAAAATGCCCCAGCACTGAAGGATGGTTTTCGG AACGTCATGTTTGTCTGCGTTGCTATGGTACTTCTTGTACTGCTCTGTTTCATTTTCCCAGCTCTTTATTCCCATGTAGC TGCTGCATGGCGAACAAAGAGAGTTCTGGGAAGAAACTGGTCATTCAACAAGAAGTCATTGCTCAGGAGATCATTAAGGA CAGAAGATTCACAGAGAGGGGGCTACCTTCGGATTTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0347700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MELAQRRVLENGEAEEMEVEIPAEEHRIYHSHPASFVKKRAYVFDGLGNFYNKDWDLAYLYKKDERETVGVEGRENEFSW YHVELPKGNQKLSQSAQDLIGVLCPPLKLQDILSLVSNGPFCAYVDGALVFRVNSPGPPSSDFTFRIAARVTENSVITVS LGRVPRLGFSRMGESLLSEIPSVESSSNFRGQQKEKSGTVIKEHVLEFLLTMNHSEEADNPVPRSVPKLVVHIIDTHVDQ LQDIVTKLEIELDSVELDLDKGGYALKKQMLDDRRFPKLHINLQRLLQVIGHGEQVYLRVKEKCSSRRWFPNEDINTLDE LIGRLRRMKENVGFIVNRVTAIQAGLDSWQSEQINRKLYYLSFLSIIFLPLSIITGVFGMNVGGVPWTGQNAPALKDGFR NVMFVCVAMVLLVLLCFIFPALYSHVAAAWRTKRVLGRNWSFNKKSLLRRSLRTEDSQRGGYLRI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 357 357 - –
PANTHER
PTHR47468
13 465 453 2.0E-244 –
SUPERFAMILY
SSF143865
61 344 284 7.19E-7 –
Pfam
PF01544
218 418 201 2.5E-26 –
Gene3D
G3DSA:1.20.58.340
222 357 136 1.7E-6 –
Coils
Coil
238 258 21 - –
SUPERFAMILY
SSF144083
353 417 65 3.27E-12 –
Phobius
TRANSMEMBRANE
358 382 25 - –
TMHMM
TMhelix
360 382 23 - –
Gene3D
G3DSA:1.20.58.340
361 419 59 2.4E-6 –
Phobius
NON_CYTOPLASMIC_DOMAIN
383 401 19 - –
Phobius
TRANSMEMBRANE
402 423 22 - –
TMHMM
TMhelix
402 424 23 - –
Phobius
CYTOPLASMIC_DOMAIN
424 465 42 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0347700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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