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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0350100 |
| Transcript ID | LotjaGi6g1v0350100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor; TAIR: AT5G64340.1 transcription factor SAC51; Swiss-Prot: sp|Q9FMF4|SAC51_ARATH Transcription factor SAC51; TrEMBL-Plants: tr|G7IPM5|G7IPM5_MEDTR Transcription factor; Found in the gene: LotjaGi6g1v0350100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66234976..66238403) extracted from Lotus japonicus Gifu genome v1.2.
TAAGCATCTACTGATGAAACCTGTAAAAGAAGGGTAAAAGTGAGATTTGGTTGTCTATATAGTCTGCCCGTGCACAAGCT CCACTACCTCTTTTGTTCATTTTCCTCTTCTGCTTGCACTCTTGTCCACTATTCATTGAATTTTCGTTTCATTTTGTTCT ATTCTGCTCCAATTTTGAAAGCCAGTCCCACGAGTCTTAATACTTCTGTAAGTCTTTCAAGAACTAGTAATTATCTGATC CTATGTTCTTTTTGCTTTCTTATGTGGTTAGTTGGTAACTGAAAAAACATTAGTTGCTAAGAACTTTGAGGATTGAAGAG CAGTTTATTTATTTATTTACTTATATAACTATATGAAGATTTTGGTTCATAATTTCATATAGCACTTAGCAGTTCCACTG TATTATGTTGCCAAAATGAAAATGAAATTATGTAACCCAAGTACACTCACACTGTCCAAAATAAATATTTGAATTACATC TCATAATACTCTAAAACAAGAGTATAAGAGAAAAAGCAAACACAAATATAAACTTATAGTGTTTTCAGGTGCTAATGCTT GGTGTTTTGGGTGTGTTAACAAGGAGATAGAGATCCCTATATATAGCCTTAGACCCTCCCACCCCTCACTAATCTAAGCG ATGTGGGGCTTCTCCAACATGCATAACTTGATCTTTTTTCTCCTTCATTAGCAATGCGAGATTTACATTGCAATCAACCC CAACACTTTTGTATGATATAATATTTTTTTCAGGAAAATTAGCATTGAGGGCATGACATCTGCCTGAAGCTCAAAAAAAT TCTGCATATCTTAACTCAGAAGGAGAAATCAGCATGCGTTGGTTGGGTCTTTCAGTTGATGTGTTCCGCCAAGTTTTACG GTTGAACTTATATTGTAAAGTTATTCTGTAGGCCATTGTTCCCACAAAATCCATATTTTGTTACTTTGGTTAGTGTGTGC TACGTTTATATTGATTGAAAAGTATAGTGACTGGTGTGGACAAAAAGAAGTTATGGTGTGCCAAGCAGCAGGCCAAACTA AATTTCGGGCATTGAAACATGAGAATGGCATTGAAGGTGAATCAACAATTATTGTTAGAGTGATTGCATGCTTTCAACCC TTGCACGATTGTCAGGTTAGTGTCTTATTGCAACTCTTTTCCTATAACTTTAGGCATTACTATGAAGCTAGCTGTTTGAT GGAAATTTTGATTTATGTAATTGTATCTATTTTGTCTGAAGCTTCTGATATCAGTTATGTGATAATTTTATGAGCTCATA GGTGATGAATATTATCTTTTAACTCTTTGCAGGCTGAGTACTTCCGTCAGTTGCTTAAGCCTGTCACGTAGATTGCTTCA CATTATTTCGTTTAAAGCTGGAATTTGTAATTTTCTTATTCTGTAATTTGTTCCCAAGAGAAGTGGCAAGTTATTGAAGA TCCCATATCAAAGCATTATACCATTGAGTGTTTGATTGTATTGTTCCCAGTGCGTTGGATGGTTAAGGCTCAAAGCACTT GGCCTTGTCCACAGCATGTGGCTTGGCCGTCATTTTTCAGTGGCGCCTGCGGATTTCCAGATCCCAATTCGAGTGGTCAT TCAGCATATCTGAATCCTAGGACTTATATTTTTCCTGGTGTCAGTGCATTTCCAGGATTCACAGCCCCTACTTCCCCAAG CCTGAAGACTGAGCAAGCCAGTGAAGTGCAAGAATTCTTTCAGTATCCTAATTCAGAACCATATTTGAAAGAAACACATT ATAGAGGGACTGTGCAAAATGCAAACCCTGCACCTCTTCAGAAGAAGTTACTTATTGTTGACCAATCTGGTACCAATACT AGATTGTTTTATAGTCCTGTCTTCCCTCATGTCCCGAGTCCAATTGTTACCGCTACACAATTTGCTCAGGCTTATGATGT GAATGGGGAAAGATGGGCAGCTAACATTGGTCAAAAGCATTTACCAAAGTACAATTTACCCGAAGAGTCAGATAAGGATC ATATAGTTAATGAAGGAAGTGAAATGCATGAAGACACAAAAGAAATCAATGCATTGCTTTATTCTGATGATTCTGATTCT GGTTCTGATGATGATGATGAGGTAACAAGTTCAGACCGTTCTCCATTGGTTGCTAACAGGACATTTATGATGCAAGAACA GTTTGAGGATACAAAGGAGGAGGTTGCTAGCTCTGATTGTCCAAACAAAAGGCGTAAATTAATCAGTGGTGGATACAAAA GATTGCCATCCCCTGTGGACAGTGCTATTTCAGTAAGGCTAAACGAGACTGGTGAGGATGTCAGTGATGCTGAATCAAGG TATTCTAGCGACCAAGTGTATTCTGCCAGGGGAACTAAGGAAGATGATTCAATAATAGTGGGTGATATTCAATTGAAAAA GGATAAAATCCGTGAATCACTGAGAGTTCTTGAAAATTTAATTCCTGGAGCTAAAGGAAAGCATCCACTGTTAGTCATTG ATGACACTATTGATTACTTGCAATCTTTGATGTCCCACAAGGGTATACTTGGGGTGAAATATCACTAAGTGCTCCTTGTG CTTATAGTATGCTGATTGAAAGAAACATGAATGGTAAAGAAAGGTTTGATTTGTGGAGTTCTTAACTTTTGTTGCATGAT AAGTTTGAACTTAGCAGCATGCTTGCTTCTTTTATCCACTTTCTCAAGGTGTATTTATAGTTTAGCAATAAAGGGGTGAA TTGAGCAATGTATAGTACTGCTCTTTGCCACTGTATTTGAAGAAAAATGGGGTATGGGATTTCAATTTGTTGACCAAAGT TCTTACTATCTTTAAGCCTTTGGAGGATAAAAGGTTACACAGATTGAATAGACAGGAGAATGTAGTGGAGGCTGTGCTGT AAATGAGGACACTTTTTTCTCTAAGTGTTGAATTCTCTTGGTGATTAAATGCATGCGCGTTTGGTAACTGAGGTCCCACT CTCCACCCTCCTTTTTAATCCGGATTTTATGCTTTTGTCCTCTCTTCCATATAAAGTACCAAGAAAGTTTCAAATGTTTG GGAGTGCTTGAATGAGGAGCGTGGTGTTTCATCATGAGTTGCTGGGACCCTTTTTGTGGTAAAGGCTATCTTGTTTTATG TGTTGAGGGTGGAATGATAGGCAAGGCATTTTCTATTTTCTACGTTGTAATTGAGTGTTCTAGGTTTCTTTTTCATGATG CTTTTGTTGTGTGTTTTCGGTTGAGTCATTGTATGAATAATTGGAGTGTAGATGTTGGGGCATGTGGTGTGTTCTGGTTT ATATGAGCACTTTTTTCCCAAAAATTCAAAGAAATAGAGAAGGAACAAGGTAAATCCCAGAAACTAAAAAACTAAACACT AGCATCTAACCCAAATTACAAACACATGCTGACTCCTACACAAAGTGGATCCTATCAAAAGATAAAAC
CDS sequence (LotjaGi6g1v0350100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTAAGGCTCAAAGCACTTGGCCTTGTCCACAGCATGTGGCTTGGCCGTCATTTTTCAGTGGCGCCTGCGGATTTCC AGATCCCAATTCGAGTGGTCATTCAGCATATCTGAATCCTAGGACTTATATTTTTCCTGGTGTCAGTGCATTTCCAGGAT TCACAGCCCCTACTTCCCCAAGCCTGAAGACTGAGCAAGCCAGTGAAGTGCAAGAATTCTTTCAGTATCCTAATTCAGAA CCATATTTGAAAGAAACACATTATAGAGGGACTGTGCAAAATGCAAACCCTGCACCTCTTCAGAAGAAGTTACTTATTGT TGACCAATCTGGTACCAATACTAGATTGTTTTATAGTCCTGTCTTCCCTCATGTCCCGAGTCCAATTGTTACCGCTACAC AATTTGCTCAGGCTTATGATGTGAATGGGGAAAGATGGGCAGCTAACATTGGTCAAAAGCATTTACCAAAGTACAATTTA CCCGAAGAGTCAGATAAGGATCATATAGTTAATGAAGGAAGTGAAATGCATGAAGACACAAAAGAAATCAATGCATTGCT TTATTCTGATGATTCTGATTCTGGTTCTGATGATGATGATGAGGTAACAAGTTCAGACCGTTCTCCATTGGTTGCTAACA GGACATTTATGATGCAAGAACAGTTTGAGGATACAAAGGAGGAGGTTGCTAGCTCTGATTGTCCAAACAAAAGGCGTAAA TTAATCAGTGGTGGATACAAAAGATTGCCATCCCCTGTGGACAGTGCTATTTCAGTAAGGCTAAACGAGACTGGTGAGGA TGTCAGTGATGCTGAATCAAGGTATTCTAGCGACCAAGTGTATTCTGCCAGGGGAACTAAGGAAGATGATTCAATAATAG TGGGTGATATTCAATTGAAAAAGGATAAAATCCGTGAATCACTGAGAGTTCTTGAAAATTTAATTCCTGGAGCTAAAGGA AAGCATCCACTGTTAGTCATTGATGACACTATTGATTACTTGCAATCTTTGATGTCCCACAAGGGTATACTTGGGGTGAA ATATCACTAA
Protein sequence (LotjaGi6g1v0350100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVKAQSTWPCPQHVAWPSFFSGACGFPDPNSSGHSAYLNPRTYIFPGVSAFPGFTAPTSPSLKTEQASEVQEFFQYPNSE PYLKETHYRGTVQNANPAPLQKKLLIVDQSGTNTRLFYSPVFPHVPSPIVTATQFAQAYDVNGERWAANIGQKHLPKYNL PEESDKDHIVNEGSEMHEDTKEINALLYSDDSDSGSDDDDEVTSSDRSPLVANRTFMMQEQFEDTKEEVASSDCPNKRRK LISGGYKRLPSPVDSAISVRLNETGEDVSDAESRYSSDQVYSARGTKEDDSIIVGDIQLKKDKIRESLRVLENLIPGAKG KHPLLVIDDTIDYLQSLMSHKGILGVKYH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 348 | 348 | 1.8E-118 | – | |
| ProSiteProfiles | 1 | 24 | 24 | 5.0 | – | |
| PANTHER | 1 | 348 | 348 | 1.8E-118 | ||
| MobiDBLite | 188 | 210 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0350100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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