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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0352800 |
Transcript ID | LotjaGi6g1v0352800.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Copper-transporting atpase p-type, putative; TAIR: AT4G33520.1 P-type ATP-ase 1; Swiss-Prot: sp|Q9SZC9|HMA6_ARATH Copper-transporting ATPase PAA1, chloroplastic; TrEMBL-Plants: tr|V7BQY9|V7BQY9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0352800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66518142..66526193) extracted from Lotus japonicus Gifu genome v1.2.
GTCGCAAATAATCAATATCTAATAAATTGTTTGCAAATAGAGAAAGGGTGAGTGTTGCTACTTGCTGTACGAGCTGTGAG GGGTGTATTGTTGTACTGTCATCGATGTCTTCATCTTCGATTCCAATTCCAATCGCCATGCATTCTTCTTCAACTGTGTC TGCCTCTGTGACGGTGACGCAGATGCGTATTACACAGACGGCAAATTTCAAACCTCTGAGCCACCGTTTGGGCAGAGGCT TGCCGCTCATCCAGCTCCATCGCCGCCTCAACTATGGCGCCTCTTTCCGCTGCTCAGCTGCTTCTTCCGGTGGTGGTGAC GGCGATGCTATCGTTCTCCATGTTGGGGTCAGTGTGTGTGTATGACTGAAACTTCCTCCAAAATCCATTGTTTATTAAAA CTCTCTGGGTATGTGTTAGCAGGGGATGATGTGTGAGGGTTGTGCAGATAATGTCAAAAAACTTCTTCAAAGTCGAGTAA GTGCTCTAAAATTTCATTCCAAAGTTAAAATCAATTTGCTTCTGTCATTAGTTTATGAGTGTTAGAATTGATTTTGAAGA AAAATAGCTTGATGTATGTTAACTGCATTTCTGAAGCTAAAATCAATTCTATGGAAAAGCTTATGTGGAAAAGTAAACAA GTGTTAAAGTACATAACAAATGGTATATTTTTTGTGTGTGAGTAAACCATATAATTTTCTTACTGAAAGTGCAATCTAAA TGTATGCTCTTTTATGGACAGCCACAAGTGTCATCTGCTAGTGTAAATCTAGCATCTGAGATAGCAATAGTTTACCCTGC ATCCGAAGAAAAAACGGCACCAGATTGGCAAAAGCAATTAGGAGAGGCACTTGCGGAGCATTTAACTAACTGTGGTTTCA GTTCTAGCCTTCAAGGTATTTCAAAATTGTCAGCATGTTATTATTTCATTTAGTTTTCTTACAGTTTTAATATGATCATT GTTGCAAATGCTACTATATTTGTTTTTATAAAATTTTATGCAATATAGAAGAAAAGGAAAAGTATTACTGGAGTTTGTAG AGGTCTCAAATCATGCCATAACTATATATTTTAAAGTAAGGGGATGGTGTGCTGGTTCAAGAATGAGAAAACCTTCTAGA TCAAAATAGCAGATATACAGGAACTACATTGAGCTCAACTCAAGATGAGTATTGAGTGAGGGCTTGAACTTACGACTTAT CAGATGCGAGTCTCTGCCCTTTCTCCAACAAAACAAATAAAGAATGTTGGGAAGGAATGGAGGGGCTGCATGCATCTTGT GGATACTTAATAATAATTTATTCCTTTCATGTGTAATGGTGCATGCTTTCACTTCTTCTTAATATGCCACTGAGCGAACC TCCTAGATTGATATCTACAGAATTGATGTTATCCTCTATGGTCTATATATGAACGTTGGGAAGGAATTGGGGCTTTATCT TTATTCAATTGTTAACTAATGGCTCGGTTGTTGCTCATTGTTATACCTTCAAATGGTTAAATACATATATAACACTAAAA TGTGATAATGGAGATTCACTCTGCTTCTAAATGTGCATATTCACTTAACAGTTTACAGTCATAACCTCTAAATGAGATTA GATGCTTATTGTATAATTGATTTGATTTACAAGAAGCTTGGTGGGTTAATTGGCAGGTCACCATATCAATGCAAAAGTGG TCGTCTAAGTAAATGTATACATGTCCTCTTCAGTGTTATTCTTAGATGTTTGGGATAGGTTTAAGAACAATTATTGATAT TATAATTTCTCACTTTTCTTCAACAGGTTAGTCTCTGCGGCCACTTTGATTATTGGAGAGCCATGTTTGTGCTCGATTGG CCCCGAATGCTATAGAATTTACTGATGTTCAATTTAAAATCAGCAATCCTGTAGTTGTAACAAATCTTGTGGATTCATAC TTCACATGTGAAGTTGGCTGGGCTGTTGCCTGTTTGTATAATACACTGAACTTATTCTAGGTAGTATTTCCATGACGACC GGTTGCTTCAAGATGTTAATAAAATGAAATGGTAAAAACATTGTAGAACATCAAACATGATTACTTTCTTCTGTTGGTCC CCTGTTTTATTCAACAGTATTTTAGTGAAAACAAAATTGTTAATAGCATTCGATAGTTAAAAGACTTTCAATAATGTAAA GTAGCGTAAAGAGTTTTGTTTCAAACTAGTAAACAAAAAACCTGAAAGGGTAATATACAACATAAAAAGATTTCAAATAT AGATCATATATGATATCATTTGAGTTTCAGTCAAGAAAGTGTCTAAGAGATGGGAAGGAGAAGACAAAATAATACAAACT AACGAAAAAAGAAGAAGAAATTCAAGGGCACTCGAAAGCCTCTGTACAAAAACTCAATTACATTTTAAGTGGAATCTGAC GCATTCAGATATGTGTATACATAATCTGTTTCTTTTTGTTGTCAGCCTATTTGAAGTCCATACATGCAACCAACATCAGG ACAACTAAAGGCATCAAGCAAACATTTCTAGCTGGGGATTCCAAAATAATGGAGTTTCCAAGCGAATTTCAGTGTGTTGT TTGGGCTGCAAAAATTGGGTTTCACACCATGTAAGTCATGCTTACTTGCATCAGATTGGAGTGAGGTACACTTAAAGTCG TGATCCCTCTCCTGCAGTTCTTTCTCAAAAAGGCATAAAAGTAGTTTATAACTAGTTTTTTGATAAACCACGAGTCCTTC CTTGCCCTTATATCCCCATGTCCAAGAAGATAAACAACTCCAGATTCTTTAGCCTTTCGTATAAAAGACAACTCCCTTTC AAGGCCCTGCTCAGCATCAAACACTGGGTGATCAGGTGTAGTTGAGTTTACTACCTCTGATGTGCTTGCTTCTAGAACGG GGTTGATTGTATCCGTAAAATCAGCAAGAAGAGGAATGCCAAGTGAGTAAACACTCCCATTGGGAGCTATGAGAACCCTA GAACCAGAGTACTCATCCTCTTGCTCAGAATCTTCATCTCCATCACTCTCTAGTGACCTCTCCTGAACTTCACGACGTAC AAACTTCTCTAGGCTCTCAATCAGCAGCTGCTCAAAAGTCAGGTGATTTTCTTTTCGAATGTCTTTGTAACCGTACCTGT TGATATATAAAAGTTCAGACAAAAATACATTTTTATGAGGATACGATACATTGTTTCACTAAATTATCCCCTTAAAGTGA TGTTCACATGAAGCTATATAGCATATTTTCACACATCTCAAAAGGTTGAAAAGGGAGAGTTACCTGGCAATACAACGAAA TATATGATAACTTTTTGGACAGACTCGCCGGAAAAGGAACCTTTCACTTTGAGGCACCATAGGAACTGGAACATACTTAA TACTCACAAATATGATCATGGAATGTATTGCTGGAAGTGTAGTCAGAAAATGGCCAAAAATTGCAGGTATTCCTTTGACC AACTCATTATACAGCAAGCCTATCCCAGGAGCTCGTATTGTCCCGAGATTAGAACCTAATTCTCGCATCAAATCCATTGA CAGTTTTTGCTTGACTTCAGTTTCATACTTGAGATTGCTTCCATAATTCCATACATACATTATAAGAAACATTATTACGG CAAACACCAATATTATCCAACTTCCATCTGCCACACTCCACAAAACAGATGAAAAGAAAACCAACTCCAATCCCAAGAAG ATTATGATGAAACTCAGCACTATGATGATGTTTAGCTGCCATATAAGCAGCATAACGAGAGTTACTAAAATAGTGGTCAT CATCATCACCCCCAGCTCAGCAATGCCTGAAAGTGGACAAAGTGGTAAGCTGAATACAAATTCGTCAATATTATTATGAT AGATCATAAGAAAATGATAACTCTCCATCCTCTGTCAACCTGCCTTCTAGTGCCTAGCTTGCCAAATCAAATTCCTATTG ATCATGATCTTCCATATTATAAATTCAAATTCCAAGATGAAATCTCTTCCATACATTCAATAGAAATATGTTCCAAAACC CAGTGATAACCTCTTACTCGTAGAAGTCTTGCTGATGGAAACATATATACATAGATTGACATTATTCCAAGCTAACAGCC AGTGTTAAAAGAACAGGGGAACAGGGTTACAAAGGGGTTTAGGATCTTGGTATTCACAGGTTTCTCCAAGCGAATCAGGT CTTCTTTTACAAGACTCCGGTTGAATTACTATTTCTCCATTATAGTTGAGAATACACAAAAGAAATATTACGAGAGGAAT TCCATGCTTTTCAAAATAATTACAGTAACATAAGCTTCTGATGCAAAGTATTGAATTCTGATAGTTGATCCCAACAAAAA TGGCAGAAATTTATATTATCACCAAGTGTCAATTTGACAAAGCTTAAGTAGATATGACTGATAAAATACAGACTATCTGC AGATTTAAAAATAAAAGTTTGAAATGCGATCATTACCATAGGCATTTCCAATCGCATCAATGCTGGATGTAGAGCAGACA AGCACCAGAGAAACAGCCAAAAGAAACCAGTTTAGGACTGGGATATAGATCTGGCCCATAAATTTCCGAGAGGTATGAAC GATTTTAAGGCGAGGGAAACAGCCAAGTGCAGTTGATTGCTTTATACATGAAAATGTTGCCGTTGTCATAGCCCGGCTTG CAATGAGTGCAGCAATGTTAGCAATAAAGAAAGTTGGCCAAAATGCACCACCTGCAGATAGACAATAGATTACTTGTAGA TCCTTTAGATTGCGAAGACAGCCCACTGTTAAGAATGATATTATCAACACTTACTTGGAACTGAAGAATAAAAGACTCTA CCAGCATCAGCATGATTTTCCATAAGGTATGCAGCTTGACCCAAATAACCCAATAGTAGGCACGGCAAAACAAGAAAGGC AAATGTAAGCTGCATATAAACACCACCAATTTGATCAACACTTAGTTCACAAGAAGAGAAAAGTTTAAAGAAATATGAAA GAAGCATGATAATATGAGAAATATAACAGAAATAATTTCTTACCTGAACTGACCGAACAGAAAAGTAGCAAAGATCTGCA AACATGGCCTCAGAACCTGCAAGATGATGGAGTAATAATTTTAATTAATAGTTGAAGAGGAGATGTACAGCAAGTCACGC TCACCTCATTAAAATATCAAGTTATAGTTGGATTTTGTTTTTTTTTGGGGGGGGGGGGGGGGGGGGTTACAGTGATAGAA CAAACAGTAGTTGAATTCCCATTATCAATGAACCTCAAAATTTGCACCTAAGCGGTGACAAAGGCACAACAAAAACTTAG CAATGCACTGTCTTTAAAACAAATAACAAAAGACTCACTAGTAGAGAAAAATCTACATAAATGTCAAGACAAAACATATA TGGTATGATTGCATCCCCAGGATCAGAACCCTGCATATATGTGTTTACCAGTTGCACATAGAAGACAACCCCCAAGAGAA TACCATGCTTTAGTTGAGTCCCTCTTGAAGAAATAGTAGATGTGAATAGGATTAAATGCCCTCAAGACACTGCTGTCATA TTTGAGAAGATTGTAAATCCCAATGCCCGCCAGAGAACAAAACCATATGAACAGAGCAGGTCCTACTGCAAGTCCCACTT TACTTGTTCCATACTTCTGTACACTGAACAAAATGATCAGACAGGTGACTGAAATCATCACCACTTCATCTGCATAGTTG AAAATGAAGAAAAAATTAATGTAGATCCCTACAGAAATAAAACCGAAGGAAAAAAACATAAAATGCTTTCTATTCTCAGC ACCTAGTCAATAAACTGTAGCGGCAATACTAAAATTACAATTTAGGAAAAATAAAAGTCCAAACTAAATTTTCTGGATCG TGGATAACATCAAACTTAGGTAATAATAAATATTACAGATAATAGAGTTCATTAAACATAATACCTTGTTTGATTGCATC TACCCCAACTTTTAAACCACCAACAGATGACAATACTGCAGTAAGACATAGATAGAAGATGAGAATTATTATACAGAACT ACATTGTAGAAACGATAATGAAAATAACAGTTGGTCATTAACACAAGTAACATGATATCATTAAAGGCATGGTATCGGTA TATTATCCCTAACACGTCATGACCAAAGCAAGTCTGAAGAAGTTACAAAAATACAAGTAACAGCAGTCAATAACCTGACA TCGCTGGCGTAACGACACCATTAGCAATCACCATAGCAGTACCAGCAAGCACTAATATTAGCAGAATCTTCTTCATAGTC ATAGAAGACTCTAGTCTTTCCTTGATTTTTAATGACCTTTCAAGCTCAGGGGAAGGAACCTTTAGCCTAAAGCTTGATAT GCGAGCATCTGATGGCAGCTGATTGGGGAGAAGACTCACCTTAGCATGACGACAAATCAAGGAATACAAGGCAAAAGTAC CGCCTGCAGTGGTTTGAAAACAAGTTTTGAGGAAATAACGATCAGAAGAGTATGACTAACAGGGAGAGAAACAAAAGTAA TACTGAAGGTTTATTTTAGAATATTTAATTTAATATACCTTCACCGTCATCATTGGCCAACAGAACAACCAGGACATACT TCACTAAAGGAATCAGGATTAAAGTGTACAAGACAAGTGATAGTGCTCCAAGTATGTCTTCATTTCCATCAATAGGGGCC TTTCTAAACATAACACTGAATGTATATAGTGGACTTGTTCCAACATCACCAAAGACAACACCAAGAGTCTGAAAAGCCAA TACAATTTTCTTTCCCAAACTGATATCCTGCAATAAAATATTACAAAAGTCAACAAACATAAAACATTTATACATAGATC GCTGACTTTCCATTACAGCTTATAGCTATAGAATCTGATGATTAGCAGTGCAAGGGTTTTAAGGAGTGGAAGTGAACACA AGCCATACACAAGTGTAATACATCAGTCAATTCATATAATCCAGTAACTCAACAAAAGGATCAACACCCAAAAGCAGAGG AAGAAGAGCAACAACAACAACAATAGGCATCTCTAGACACTAAACTTTACACGACGGCTTGTATTGTTAATATCATTAGC TAGGTTGTAATATGTAAGAGAATTTGGGTATATCGCGATCATGGTTCAGAGCACAGGGCAGTTACTTCTTGAATAATGAA TATTCACTGACCCTAGTAATTTTTACCCCTTTTTTACCTGTGAATGTAGGCTGTAGGTTGAACAATGTCTATATTCCTTG TACTTAACTACTTATTTTCCATTTGTGAACCAGGTTATAACATTCAATTAACAATCATAATTCATAACGTCTCACACACA AACACAGAAAAATTAACAATCACAATTCATCAACTTAAATGTTTTTCCATCTGAAACTTCAAGTTAAAATCACAAAATTC ATAAAATAGAAACACACAGAATTCAGAATTAACCTGGCCAATAACTCTACTCGATTCCAATCACCTTCACTCAGAAAAAA AAAAAATACATACTACTAGTAAGTATATCACAAATCACAAACCCTATACTCCACTGTAAATGATTATCATGATTGAAATG CAAAATTCGTTGAGGTAATTAGGCAAAGAGAGAAAGGGAGTACCTCATAGTCATTTCTGAGAGCACCAGGGACGTCAAGA GCTTCAACATCGAAGGAATCAACTCGAGGACCAGTACGAATGAGTCTCTGCTCGGTGGTGCCATCATCCTCCTCGTCGGA ATCAAGCAACTGCACAGGAGCACCGTTTCGTCGGCCTCTCAATCTCAAATCAGCGTCGAAGTCCTCAATATCCGACGCAT CCTCATCTTCTTCATGGTAAACCCACCTTGATTCCGTCGAGTCCATCGAGTACCCGCGCTCGCCATTGATCTCACCTCTC TCCAAATCCATCAAATCTGGATTCGATTCGATTCCACACGGAACTCAGCAACTCAGTGAGTTCGAGTTCGCCACAACACT GAAACTGTTCTCGTTGCATTTCAGAAACTGTATCATCATCATCAACATCACAACGAAGGTGGTGAGCGCGCGTGAGAGAT ACGATGCAAATGGAAAGCTGTTACTGTTCTCATATAAATTGTTATACCTTAT
CDS sequence (LotjaGi6g1v0352800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCATCTTCGATTCCAATTCCAATCGCCATGCATTCTTCTTCAACTGTGTCTGCCTCTGTGACGGTGACGCAGAT GCGTATTACACAGACGGCAAATTTCAAACCTCTGAGCCACCGTTTGGGCAGAGGCTTGCCGCTCATCCAGCTCCATCGCC GCCTCAACTATGGCGCCTCTTTCCGCTGCTCAGCTGCTTCTTCCGGTGGTGGTGACGGCGATGCTATCGTTCTCCATGTT GGGGGGATGATGTGTGAGGGTTGTGCAGATAATGTCAAAAAACTTCTTCAAAGTCGACCACAAGTGTCATCTGCTAGTGT AAATCTAGCATCTGAGATAGCAATAGTTTACCCTGCATCCGAAGAAAAAACGGCACCAGATTGGCAAAAGCAATTAGGAG AGGCACTTGCGGAGCATTTAACTAACTGTGGTTTCAGTTCTAGCCTTCAAGGTTAG
Protein sequence (LotjaGi6g1v0352800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSSIPIPIAMHSSSTVSASVTVTQMRITQTANFKPLSHRLGRGLPLIQLHRRLNYGASFRCSAASSGGGDGDAIVLHV GGMMCEGCADNVKKLLQSRPQVSSASVNLASEIAIVYPASEEKTAPDWQKQLGEALAEHLTNCGFSSSLQG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_GRAM_POSITIVE | 1 | 20 | 20 | - | – | |
PANTHER | 50 | 148 | 99 | 2.2E-18 | – | |
PANTHER | 50 | 148 | 99 | 2.2E-18 | – | |
Gene3D | 74 | 150 | 77 | 1.5E-16 | – | |
ProSiteProfiles | 75 | 149 | 75 | 14.721 | ||
SUPERFAMILY | 76 | 130 | 55 | 5.37E-12 | ||
CDD | 77 | 133 | 57 | 1.8552E-12 | ||
Pfam | 78 | 145 | 68 | 1.3E-9 | ||
ProSitePatterns | 80 | 109 | 30 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi6g1v0352800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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