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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0353000 |
| Transcript ID | LotjaGi6g1v0353000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CD2-binding protein-related, putative; TAIR: AT5G09390.1 CD2-binding protein-like protein; Swiss-Prot: sp|F4JCU0|SUA_ARATH SUPPRESSOR OF ABI3-5; TrEMBL-Plants: tr|I1MDW4|I1MDW4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0353000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66527133..66532470) extracted from Lotus japonicus Gifu genome v1.2.
ATTACTGTGGTCCTTGTCTCCATGACCAAGTAACAAAAAAAAAAAAGGAGATTCAAAGAGAAAGAGAGGGTTCTCGTTCT CCGTCTTCAATTGTTGAACTGATTCTTCTTCTTGAGCAGCATCAATGGCGGGTGGATCATCTCGCAGCAGCGGTAAACGC CCCTTGGCGGAAGAAGATGAAGAATTCAGCAAAAAACCACCGTAATTTCTCTTCCCCTTTCACTCACTCACAAACCCTAA TCCGATTCATTTCTATCGAGAAATTTCCTTTTATTGATAGAATCGATTTTTCTGACTCAAGTTATTAGATATTGATTGCT GTGTAGTACTAGTTAGCTGTATGCGTGTGTGTCTGGTTTAGGATTTTTGCTTTGACATTGTTGTGATGAATTTATGAAAC TGAGTTCTATTGTACTTGTTTTGAATGAATGAATTTACACAGAGCTAAGAGGGTAAGGTTTCCAAAGGGTAAGAAAGTGA AGCCAGGGGATGAAATAGTGGATATAGTAAATGTACCTGCAAAAGTTGAGGAGGATGAAAGCGACTTGACGAACCCCCGT GCTGCTGCTAAAGAGCGCGCGAAACGCAGGAGCCAATTTACTTCCGAGCTCTTTCGCGAGGAAACTGGAGCTATCTTGAA TGACGTAACAGCTGCTGAAATGAGATATGAGGTTTGTCTTTTTAGTTTTTCCTTGAATTCATACAAAAATTTACCTAGTC GCTAGTACGTTAATCAATGTATGTGTATGACCTTTTTGCTGTCAATATAATTAAAATTGATGTTGGTTAAGAGATTACAG TATATATGAATATGATGTATTGATGTGGATGAAATTTTCATTTTGCATTTCTGCACTCTGCTGCTGCTACTTTCAAATTT GAATCTACGCTGTTGTACACTACCGAATGCTGATTGAAATATTCCAGTTTTCAACGCTTGAGTTTTATAAATTTGCAGTG ATCAGGGTGTATGGAGTGTCTTTCTTTCGTTCTTCGTGGATTCTAGCATAAAAAAATATGTTTGTGAAGTTTGTAGGATG TAGACTATTGTGTGTGTGTATTTTGTGGTGTGTTTCTTTCCTAAAATTGGCAGTAATTTTTCATTCAAGGTGTTGCCACT TTCATCTGTTATTGGGTCCATATAAAAGGATAGGCAGGCAGTGATTGGTGATATCTGTTGGCAGGATAATGAGAATTTTG TTGATGACGGGATTCAAATTGAGCCTTTCAACTTAAATAAAGAAAGGGAAGAAGGTTATTTTGATGCATCAGGGAATTTT ATCGAATACGTAAGAGATAATGAGATTAAGGTGAGACATTTAAATTATTTTTATTTGTGATTTGTGACTATTTCATTTTG ATTCTTTTAGTAAATTATTAAGGACCCTTGCAGGATGCCTGGCTTGATAATGTTGAAGTTGATCCAAGATATGCTGCATT AGCCTCTGTGGAAAGAAATGAGGAGGAGGAGGAGGAGGCCCAAGAGCTTTCTTCCAAAGATATTGGAATCATCAAGAGGC GCATTGCAGATGTTCTTGAACCAGAGGAAACAGTAAGCCTACATCTTATCATTCTGAGGGCCTGTTCAGTTTGAGAAATA TTTTGTTGTGTTCACCAATAATTACAAAAGTGCTACCTAATTTTTAATGTTTTCTGTTCCCAAATATTTATATAGAAAAA GTGAAAAACTCTATATTTCTAGGGCTGTTGAGGGTCATTTGCCCGGTTGTATTAATTAATACTTCTTCCAATAGGTCTTG CAATGCTTGAGAAGGTTAAAAGGTAACAGTGATAGAAAGGCAAAGATGTCTTCTGAGACTAAGATTGTATTTGACCAGCT AACTGAGGATGCTGCGAGGCTGATGGAGAATGGCGAATACAGTTAAGTTATTCTCATTGGGCTTTATAAATATTTGCCAA AGTTGGCAACTTGAAATATCCACTCATTACTATAGCCTAATGAGACCCTTTATGTTGTGCATCATATTTTTTGAAGAGTG TGTTTTTTGTGCACAATGTTTAATTTTGGGTTCTTTATTTTTTGTTCAGATGTTTATCATGAAAAGAAAGAGATTTTTGA GCGTGAAGCAGGTCAGTGTTTACCAGATGTCTTAATTCTACCTGTATTATGTTTTATTGTCATGTTCACACCTTTACTTC ATGTTCTGTGACATAAGTTATATAATTACCAAGTGTTTTGAATATACATCTAAATTTTCTATTGTAATTGGATTTGTTGC CTGTTCTGTTAGTTCTTTTTATTATAATTCTGCTCAACTTGTGTTTCTATCATGGTCATGATATGAGATGAAATTAGCTT CTCTATATCATAGTGTTTGTCAATTCTAAGTATCAGAGAAACCATTTTTTGAGCCTCCATCTTAAGCTTTGGATTTTGGG AAGTTGGTACTCAGCTGGATTTAATTGCAACATTTTCTTTGTCTCTTCTCTTTCCTTCCATGATGATACTGACATATGTT TATGAGTAGAAAAGAAGGGTAACTAATTGCTCAAAGCTTATGCCTTTTATAATCTTCCTTTTTCAGAAGGATATGAGAAG GTTGCCCGGGCAAAAGGAGAAGGCACATCTCTGCTCTTAGGTGAAGGGAATTTTTATCTGAATGGGGAGGAAAAATTGCT TTCTGATGGTCGGGATTCTGGTGTGGCCTCTACATTGACTACTGCTATAGGGACTTCAAATCCACATTTGGCTAGTGCAG AAGTCTCAGGCAATGGTGACGACTTTGATATGTTTGGTGACGATGATGAGCCTGCTACCACTAAGCCATCTACTGATGAA AATAGTACAGTTAGTCAACCATCATCAGATGCCATAAATTCCGGTAAAGAGGGTAAATATATTACCTCAACAAATTGGTA TCTGAAATGGAAATTTTGTTGCTGATAAGTTTTTTATATGACATGGTTCTACTTTTCTTTCCAGGTGAAGCATTGCAAAA CGATTATGTATATGATGAATCTTCTGGGTATGACTCTTCTCTTCCCTCTTCTTTTTTTGGAAATAATCTGACAAGTGTGA CATTAGTCACCTATATTGCAGTGCCATAAAAAGTCACTTAGTACTCAATTCTTCTTTCTTTAAATGAACTCTTTTATCAA ACAGCTCTGTTGAAAACTTGATCTGACATCAATATAATGGTCCAGGTACTATTATAGCAGCAGTTTGGGCTATTATTATG ATCCAAATACTGGCCTTTATTGCTCTGCAGCATCAGGGAAATGGTATTGTGCATTCATGATTCATTTTAGCACGTGTTGT GTGTCAGGTTTTATTTTGATATTTGTAGCTTTTTTGTTTATTAGTCATCCCAGACACGTCTTTGGATATGTATTCTTAGC TTCATACAATTTGTTGGATGCACCTGGTTCATTCATTTTTTGGTCTTACACAGGTACTCGTTTAATGAGGAGTCTAACAC TTACGATGAAGTTCATGAGGTTGCAGCTGATGTAAGTTGAGGAACTTGTTTCAAGTGAGTATAGTCTGTGTAGCATATCC ACAATCATCGTCTATTAGTGGCATATGTACAGAGAAGCACTCTTGATCTTTTGAACATACTTTTTCTTGCGGGAATTTCT TCTTTAGGTGCTACTGCTAGCAGTTTTTCTGCTTTAATCTCTTAAGTTTTCTATCTATTATGTAATATCTTAAACTTTGC GAGCAAAATTCTCCTAAAATGTTAACTAAGTTAAGAACAGTAGATGCTTACTCTTTCAATCTGGGAGCCCAGTACAGTTT TTCCTTCAACTTGCAAATCAGTTTGCTCATGCAATTAGATAGTTGTTGGCGTCAGTCTAGGACTGTTCATGGTTCGGTTC TTTGCTTGAACCGAACCGAACCTGAACCAAAATTTTGGTTCGAGAGAACCGAACCGAACCGAACCGATATAGTATGGTTC GAACCGAACCGAACCGGTTTCAAATTTTGGTTAACCAGTTTGGTAAAATATGCATATTTATAGATGGTTCGAACCGAACC GAACCGATATACTATGGTTCGAACCGAACCGAACCTGAATTGGTAGTTGATATTTTGGTTCGGTTACCGAACCGGTTTTT CAATTTAGGTTCGAGTTCGGTTCGGTTCTTAAAGGTTCGGTTCTTGAACGGTTCGGTTTTCGGTTCGGTTCTTGGTTAGC TTCGGTTCTCAGAGAACCATGAACAGTCCTAGGCGTCACCTTGCCAATGCCCTGTTAGTATTCGACAACATTATTGGTAA AAATTATTACTTACATCAAAAGATGGATGTTATGAACTGTTAATGAATTGTTTATTGCATTTTTATTCTCATGCTGTTAA TTGTAATTTTTTTTGGCTTAATTACAACTTTGGTCCCCGACGTTTACCAATGCCACGATTTTGGTCCTCCACTTAATTTA ATTACATGGATGGTCCCCGACGTTGTAGGTCGTGTGCAACGTTAGTCCTACCATTTATTTCTTAATGGAGGAGGCTTACA TGAACGTCTAGTTGGAGAGAAAAATGAGATCTGAGGAGAGAGGGAAGCACGTGAGAGTATCACGTGAACTCACGTGAACC TTATATGAACTCATTATACCCAAATCTGAAATCCTAGGGATCTAAATCGCGTTACCTTCTTCGTTCCAGGGAGGTCAGGG GTTTGGGTATAATGAGTTCAGATAAGGGTCACGTGATACTCACGTGCTTCCCTCTCTCCTCATACCTCATTTCTCTCTCC AACTGGACGTCCACGTAAACCTCCTCCATTAAGAAATAAACGGTAGGACTACCGTTGCACACGGCCTACAACGTCGGGGA CCATCCATGTAATTAAATTAGGTGGGGGACCAAAATTGTGGCATTGGTAAACGTCGGGGACCAAAGTTGCAATTAAGCCT TTTTTTTTATGCAAACTGTTAATTGTAATTCAATACGCAGAAATGTTGTCAGTTATAATATCCACGTATATCACATTTAA TCTGTTTTTATTGCTATCAATGGAGTTCTGGGTTTAACCTTTCTGTAATCATAATCCATCCATTTCCAACGTTTTTTGGT ACCTGGATTTGGTATTGAAATAAGGCTGAGTTAACCTGAAGAACTCTACTATCATCGTGCATCTCTGATGCTCGGAAAGC ACTCCCATACATATTCCTCATGTTCATCATTTCAGTATTAGGAAAGAAATACCAAATCCTCATCTTATTTGTCCTCCTCT TACTTTGTAACAAAAACAAACAAATGTTCTCTCAATGAACTACTAATTCAAATGTATCACATTTGTTTTTTTACAATCAG CACATAGTTATTACTCCCTCCGTTCCTAAATATAAGACCTAGTTTCAAAATTTTGAAG
CDS sequence (LotjaGi6g1v0353000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGGTGGATCATCTCGCAGCAGCGGTAAACGCCCCTTGGCGGAAGAAGATGAAGAATTCAGCAAAAAACCACCAGC TAAGAGGGTAAGGTTTCCAAAGGGTAAGAAAGTGAAGCCAGGGGATGAAATAGTGGATATAGTAAATGTACCTGCAAAAG TTGAGGAGGATGAAAGCGACTTGACGAACCCCCGTGCTGCTGCTAAAGAGCGCGCGAAACGCAGGAGCCAATTTACTTCC GAGCTCTTTCGCGAGGAAACTGGAGCTATCTTGAATGACGTAACAGCTGCTGAAATGAGATATGAGGATAATGAGAATTT TGTTGATGACGGGATTCAAATTGAGCCTTTCAACTTAAATAAAGAAAGGGAAGAAGGTTATTTTGATGCATCAGGGAATT TTATCGAATACGTAAGAGATAATGAGATTAAGGATGCCTGGCTTGATAATGTTGAAGTTGATCCAAGATATGCTGCATTA GCCTCTGTGGAAAGAAATGAGGAGGAGGAGGAGGAGGCCCAAGAGCTTTCTTCCAAAGATATTGGAATCATCAAGAGGCG CATTGCAGATGTTCTTGAACCAGAGGAAACAGTCTTGCAATGCTTGAGAAGGTTAAAAGGTAACAGTGATAGAAAGGCAA AGATGTCTTCTGAGACTAAGATTGTATTTGACCAGCTAACTGAGGATGCTGCGAGGCTGATGGAGAATGGCGAATACAAT GTTTATCATGAAAAGAAAGAGATTTTTGAGCGTGAAGCAGAAGGATATGAGAAGGTTGCCCGGGCAAAAGGAGAAGGCAC ATCTCTGCTCTTAGGTGAAGGGAATTTTTATCTGAATGGGGAGGAAAAATTGCTTTCTGATGGTCGGGATTCTGGTGTGG CCTCTACATTGACTACTGCTATAGGGACTTCAAATCCACATTTGGCTAGTGCAGAAGTCTCAGGCAATGGTGACGACTTT GATATGTTTGGTGACGATGATGAGCCTGCTACCACTAAGCCATCTACTGATGAAAATAGTACAGTTAGTCAACCATCATC AGATGCCATAAATTCCGGTAAAGAGGGTGAAGCATTGCAAAACGATTATGTATATGATGAATCTTCTGGGTACTATTATA GCAGCAGTTTGGGCTATTATTATGATCCAAATACTGGCCTTTATTGCTCTGCAGCATCAGGGAAATGGTACTCGTTTAAT GAGGAGTCTAACACTTACGATGAAGTTCATGAGGTTGCAGCTGATGTAAGTTGA
Protein sequence (LotjaGi6g1v0353000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGGSSRSSGKRPLAEEDEEFSKKPPAKRVRFPKGKKVKPGDEIVDIVNVPAKVEEDESDLTNPRAAAKERAKRRSQFTS ELFREETGAILNDVTAAEMRYEDNENFVDDGIQIEPFNLNKEREEGYFDASGNFIEYVRDNEIKDAWLDNVEVDPRYAAL ASVERNEEEEEEAQELSSKDIGIIKRRIADVLEPEETVLQCLRRLKGNSDRKAKMSSETKIVFDQLTEDAARLMENGEYN VYHEKKEIFEREAEGYEKVARAKGEGTSLLLGEGNFYLNGEEKLLSDGRDSGVASTLTTAIGTSNPHLASAEVSGNGDDF DMFGDDDEPATTKPSTDENSTVSQPSSDAINSGKEGEALQNDYVYDESSGYYYSSSLGYYYDPNTGLYCSAASGKWYSFN EESNTYDEVHEVAADVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 37 | 37 | - | – | |
| MobiDBLite | 11 | 27 | 17 | - | – | |
| PANTHER | 20 | 408 | 389 | 1.6E-91 | ||
| MobiDBLite | 53 | 75 | 23 | - | – | |
| Coils | 159 | 179 | 21 | - | – | |
| MobiDBLite | 307 | 358 | 52 | - | – | |
| MobiDBLite | 334 | 354 | 21 | - | – | |
| Pfam | 360 | 409 | 50 | 1.5E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | U5 snRNP | A ribonucleoprotein complex that contains small nuclear RNA U5. |
Expression pattern of LotjaGi6g1v0353000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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