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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0353200 |
| Transcript ID | LotjaGi6g1v0353200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WAT1-related protein; TAIR: AT1G25270.1 nodulin MtN21 /EamA-like transporter family protein; Swiss-Prot: sp|Q4PT23|WTR6_ARATH WAT1-related protein At1g25270; TrEMBL-Plants: tr|V7BR58|V7BR58_PHAVU WAT1-related protein; Found in the gene: LotjaGi6g1v0353200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66555850..66559274) extracted from Lotus japonicus Gifu genome v1.2.
ATAGAAGAGTGACTGAGGAGATGCTGCTGCTGCTACTGCCGGCTAGTGAGAATGGCAGGAACCATGAAAGCATTCTTGCT CATGTTTGTGGTGCAAGCCGCTTTTGCCGGAAACAACATTTTGTATAAGATTGTTATCTTTGACGGAATGCCGGTCAGCA TCATCACTGTTTACCGTCAAATCATTTCAGCCGCCTTCACTCTATCCTTAGCTTTCATCTTTGAACGCAATAACATGCCC AACCTCACTTTCAAGCTCCTCTCCATCTCCTTCTTGAATGGATTACTTGGGTACGTACACAGTACGTGTGTATATATATT TTTATATATATATATATATATATATATATATTTGTGTTTAACACCTTTGTTTTTTGTTATGACATAGGGGAAGTCTGTAC CAAAATTTATATTTTGAATCATTAAGCTTAATATCAGCCACCTTCGTCACGGCTCTGTTCAACCTTATTCCGGCCATTAC TTTTGCTTTGGCCATCTTATTCGGGTAATTTATATATTTAATTACCACTATATATATTATGTATCCTGCATTTTTTTTTA ACTAGCTAGGTTTCTAACCTTTTCTATAATTCATCAAAATTCATATAAAGTTATAATGTGGTTTTAATTGTATGCATCAC TGCATCAGGTTTAGATTAGATTTCTTTTCTCTGTGTACTCTAGTGATCAATGTATATAAACACTGCTCACAGTACTCCTT GTAATTGATAACTAAATTGAATTCATTTTTCAATAAATTTTCAGTTTGGAAACTCTAGATTTTCATGCGATTGCTTGCAA AGTTAAGGTGATGGGTACAGTTATTGGAATTGGAGGGGCTATGTTTGTGACATTTCTCAAAAGTGTAGAACTGAGCATCT GGCCCTTCCACTTCAACATATTGAACAAGAAGGAAATAGAAACTCATTCGGGGAGTAAAGTGCTTGGAATCTGCTTTGGT TTTGTGAGCTGTATTCTGTTTTCATTTTGGCTCATCTTTCAGGTAATTAGCATGCATACATACATCTTATGTTGAAATTT GGTTGATTTCATTTGTGGTCTTTAATCATTATTAATTCTTACACTGCAGGGTAAGATGAGCAAGAGCAAAACATATCCAC AACATTACACAAGCATGGCTTTAATGTCCATGATGGCAGCTTTACAAGCAACTGCTTATGCACTTTGTGTCGAAAGGGAT TGGAGCCAATGGAGGCTTGGTTGGGATTTGAGGCTTCTTACTGTAGTATTTTCAGTATGTGCTAATTATGTTACAGACTT AATTTGAAATTAGCATGTTGGTTTAAATGATTTATCGATCAAGTAGCTAGCTAGCTAGCTAGTATGCTATAACATGAATT GATGATGTTGTTGCAGGGAACTATGGGTACAGGATTTGCTAATGTTGTAATTGCTTGGTCTGTGAGGAAGAAAGGTCCAC TCTTTGCTGCCCTTTTTAGTCCCGTTGAGCTTATACTTGTAGTCATTGCTGGCTCAATTATGTTGGATGAACCCTTGTAC TTAGGAAGGTATGCAAATTAATTCTAGTGCACCTAAATATACACATTACTTATGGTGCATATGTTCATGAAATGATTTTT GAAATATTTTTCAGCCTAATTGGAGGGGTGCTGATAGTGGTTGGCCTTTACATGGTTCTTTGGGGTCAGAACAAAGAACT CCAAATGACCACTCAGTTGGAAGCCGAACACATTGAGGGTGCAAACACCATGGGAACCTGGAGAGCCCTAGAGGGAGATG CCAGATAGCTTAATTCACACTTGCAAAAGGGAGAAGATTTGATGAGAAGAAACACAAGTTTAATTTTAAGTGCCTTTAAC TTGAATCTCTGTGGTTTGGTAACAACATGATCATTAGCTTGATTTCTATTTCCAACATATGCATGTGATCGATGAAGATT GAAAAACATTCGTAAATTTTTAATTTACTGCAGTAAGGACAATTTTTGATGAGGTTGCTTCTCGTTATGAAAGGTCATTT GTTCTGCATCTCCATATACCTTGAAAAAAAATCAGTCATTTCATGGATCCATCACATGCATATCTTAAAATTGTATGCTG TGTCTGAACAGCAATGCATGAACCTAAAGGGGATGGGGGTCTGGGTTGATAATAAATGGTATTGGGACCTCAAATGGGTA AGGAGTCTGGAAGGGGATCTACTAGTTCAATGTGCTGAGTTGCTGCAATTAATTTCCTCCTTTGTGTTAATAAGGGGAAG GAGGGATAGCTGGGTCTGGATAAAGGAAAATGATGGGAGGTATTCAATAAGATCAGCTTATGACATGTTAGCGGCCAGTA ACCCGGAGAAGGAAGAGGAGGAGGTTTTTAAACTCCTTTGGAGGATCTCAGCTCCCTCTAATGCAATTTCAGTGGGATGG AAGCTGCTAATTAACCGTCTTCAGTCCAAGGAAAACTTAGCCAAGAGAAATATTCCTTGGGCTGACTTGTTGTGCTGTGC CCCTTTGCTCCTCTGAGGTTGAATCCACTGATCACGTATTCCTAAGCTGCATGAGAGTATGGCAGGTTTGGTCTTTGATT GCGAACTGGTTGAGTATTTCGTTGGTGTGTCCTAATACATCTAAGGATCATTTTTATCAGTTTGTTTGCTGTCTTGGTTT TGGTAGTATGCGTGGTCTGTCACTCATTTGGTTAGCTGCTGTTTGGCACATTTGGCTTGGTAGAAATGGGAGGATTTTTA GAGATGAAGTGTTTGAGGCAGATACAGTTTTTGAACTGGCAAGAAGGAAGGTGTGGGAATGGTTGAGGGCCAAGAATAAT CAGTTTTGTCATGCCTTGTCTGAATGGTATATGGAGGGAGCCCTTAGCTTGTCTTGCTGATATGTTGTTTTGGAGATATG ATGTTGGTCCTGTGGTGATAAATTTAGAAGGTAAGCACGGCTTGTTTGGAATTCAAAATCACTTGCTCTGGTCTTTCCAT TTAGTGGCATATGAAGTCTTTTGGTGGCGTTGGTGATCTGAAAGGGGGGAGGAATATTTTGTTGCAGGGGTTTAATCTAT TTTGTTGGTAGGTCCTCAAGGGGTTAATATTCTGGTGGAGCTCAAAGTATGTTGGTATGTGTAGTTGGGAGGCTCATCAG AAGCTGAAATTATACTTTTGGTCCTATCTGACAGTGATGGAGTTAAGGCTTTCAGCATTTGTTTCACTTGTCTGGTTTCT GGGACCTCTTGGAGGTTGTTATAGAACTTAGGAACTTTGTACTCTTTTTCCTTCTAAGCTTTTATCCCTAAGGGGTTTTT CCTAGTAAGGTTTTAATGAGGCATTGTTTCTTTTGTCTTTCCTTCATTGAGGTGGGGATTTTCTAAATCTTATTTAATTT TTAGCATTTTATTCTTGTTCTTACTCTTGTATTGGGCTGAAGTATCCCTTGTACTTCATTTCAAT
CDS sequence (LotjaGi6g1v0353200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGGAACCATGAAAGCATTCTTGCTCATGTTTGTGGTGCAAGCCGCTTTTGCCGGAAACAACATTTTGTATAAGAT TGTTATCTTTGACGGAATGCCGGTCAGCATCATCACTGTTTACCGTCAAATCATTTCAGCCGCCTTCACTCTATCCTTAG CTTTCATCTTTGAACGCAATAACATGCCCAACCTCACTTTCAAGCTCCTCTCCATCTCCTTCTTGAATGGATTACTTGGG GGAAGTCTGTACCAAAATTTATATTTTGAATCATTAAGCTTAATATCAGCCACCTTCGTCACGGCTCTGTTCAACCTTAT TCCGGCCATTACTTTTGCTTTGGCCATCTTATTCGGTTTGGAAACTCTAGATTTTCATGCGATTGCTTGCAAAGTTAAGG TGATGGGTACAGTTATTGGAATTGGAGGGGCTATGTTTGTGACATTTCTCAAAAGTGTAGAACTGAGCATCTGGCCCTTC CACTTCAACATATTGAACAAGAAGGAAATAGAAACTCATTCGGGGAGTAAAGTGCTTGGAATCTGCTTTGGTTTTGTGAG CTGTATTCTGTTTTCATTTTGGCTCATCTTTCAGGGTAAGATGAGCAAGAGCAAAACATATCCACAACATTACACAAGCA TGGCTTTAATGTCCATGATGGCAGCTTTACAAGCAACTGCTTATGCACTTTGTGTCGAAAGGGATTGGAGCCAATGGAGG CTTGGTTGGGATTTGAGGCTTCTTACTGTAGTATTTTCAGGAACTATGGGTACAGGATTTGCTAATGTTGTAATTGCTTG GTCTGTGAGGAAGAAAGGTCCACTCTTTGCTGCCCTTTTTAGTCCCGTTGAGCTTATACTTGTAGTCATTGCTGGCTCAA TTATGTTGGATGAACCCTTGTACTTAGGAAGCCTAATTGGAGGGGTGCTGATAGTGGTTGGCCTTTACATGGTTCTTTGG GGTCAGAACAAAGAACTCCAAATGACCACTCAGTTGGAAGCCGAACACATTGAGGGTGCAAACACCATGGGAACCTGGAG AGCCCTAGAGGGAGATGCCAGATAG
Protein sequence (LotjaGi6g1v0353200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGTMKAFLLMFVVQAAFAGNNILYKIVIFDGMPVSIITVYRQIISAAFTLSLAFIFERNNMPNLTFKLLSISFLNGLLG GSLYQNLYFESLSLISATFVTALFNLIPAITFALAILFGLETLDFHAIACKVKVMGTVIGIGGAMFVTFLKSVELSIWPF HFNILNKKEIETHSGSKVLGICFGFVSCILFSFWLIFQGKMSKSKTYPQHYTSMALMSMMAALQATAYALCVERDWSQWR LGWDLRLLTVVFSGTMGTGFANVVIAWSVRKKGPLFAALFSPVELILVVIAGSIMLDEPLYLGSLIGGVLIVVGLYMVLW GQNKELQMTTQLEAEHIEGANTMGTWRALEGDAR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 6 | 333 | 328 | 8.3E-124 | ||
| Pfam | 6 | 148 | 143 | 9.6E-12 | ||
| PANTHER | 6 | 333 | 328 | 8.3E-124 | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 7 | 14 | 8 | - | – | |
| Phobius | 15 | 19 | 5 | - | – | |
| Phobius | 20 | 34 | 15 | - | – | |
| Phobius | 35 | 57 | 23 | - | – | |
| TMHMM | 39 | 57 | 19 | - | – | |
| SUPERFAMILY | 41 | 146 | 106 | 8.89E-6 | – | |
| Phobius | 58 | 68 | 11 | - | – | |
| TMHMM | 69 | 88 | 20 | - | – | |
| Phobius | 69 | 88 | 20 | - | – | |
| Phobius | 89 | 93 | 5 | - | – | |
| Phobius | 94 | 120 | 27 | - | – | |
| TMHMM | 98 | 120 | 23 | - | – | |
| Phobius | 121 | 131 | 11 | - | – | |
| Phobius | 132 | 158 | 27 | - | – | |
| TMHMM | 136 | 158 | 23 | - | – | |
| Phobius | 159 | 177 | 19 | - | – | |
| Phobius | 178 | 197 | 20 | - | – | |
| TMHMM | 178 | 197 | 20 | - | – | |
| Pfam | 179 | 319 | 141 | 3.0E-12 | ||
| Phobius | 198 | 208 | 11 | - | – | |
| Phobius | 209 | 230 | 22 | - | – | |
| TMHMM | 210 | 232 | 23 | - | – | |
| Phobius | 231 | 249 | 19 | - | – | |
| SUPERFAMILY | 236 | 323 | 88 | 1.18E-8 | – | |
| TMHMM | 247 | 269 | 23 | - | – | |
| Phobius | 250 | 269 | 20 | - | – | |
| Phobius | 270 | 275 | 6 | - | – | |
| Phobius | 276 | 294 | 19 | - | – | |
| TMHMM | 276 | 295 | 20 | - | – | |
| Phobius | 295 | 299 | 5 | - | – | |
| TMHMM | 299 | 321 | 23 | - | – | |
| Phobius | 300 | 319 | 20 | - | – | |
| Phobius | 320 | 354 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of LotjaGi6g1v0353200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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