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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0355100 |
| Transcript ID | LotjaGi6g1v0355100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain protein,; TAIR: AT5G64530.1 xylem NAC domain 1; Swiss-Prot: sp|Q8GWK6|NC104_ARATH NAC domain-containing protein 104; TrEMBL-Plants: tr|A0A1J7HL74|A0A1J7HL74_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0355100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66710082..66711719) extracted from Lotus japonicus Gifu genome v1.2.
CCAACTCACTTTTGGTGATCCCGTTTCTTGAGCAAGTACCTATCCATCACGTTCCGTTATCCGCAGCCTTGGTTGCTTGG TGTTGAGTGCTTCCGTGCCAACAAAACTTATCAAATATTTGATGAGATGTATGTGTTTTGTAATTGTACCTGATTAATGC CATCTTCTATTTTACGTTAGACCCTAATATATCTATCTCTCTATCTATTCATTATACCTTCTTTGCACTATAAATGCCTT CCTTTCCAAACCAACCTTGACCAACACCACCTTCACTACCTCTATAGCTACTTCTCTTGTTGCTTTAATGGGAGATAACA ATGTCAACCTTCCGCCCGGATTTCGATTTTATCCAACAGATGAGGAGCTTGTAGTTCATTTTCTTCATAGAAAAGCAGAA CTTCTACCTTGCCACCCCGATGTCATCCCTGATCTTGAGCTCTACTCATATGATCCATGGGAACTTGATGGTACCATTCT TTGTTTTTAAATTTTCAGCTTTCAATTACAGCTCTTTGTATCATTGTTGTTAGATCATAGATTGCCACTATCTAGGAAAT TGGTCTTTGGTGTATATTAATTGAAAAATGCTTAGTGTCACACTGTTAATTTTGTCACATCAAGCATTTATTTTCATTTT CAGTGGAAGTTAACCCCCTAGCCCTCCATGATTTTGCATTTTCATGTTTGCTGTTGTTTTTTCCTTCGTAAATGATTAGA GGTGAAGATTTCTCTACCTTATATAATTACTTATTTAGTCATATTTCTAGTCAATATGAGAACCATGTTGATAAATTCTT GGTGCGGATGTACATGGGCAGGTAGAGCTTTGGCAGAGGGAAATCAATGGTACTACTACAGCAGAAGGACACAAAATAGG GTCACTGAGAATGGATATTGGAAGCCAACAGGAATTGAAGAGCCAGTGATTTCTAGCACAAGCAATAAGAGAGTTGGCAT GAAGAAATATTTCATGTTCCATTTGGGAGAAGCCAAAACCAATTGGATAATGCAAGAATATCGTCTATCAGATTCTGCTT CCTCCAGCAGCAGATCATCCAAAAGAAAATCACAACAAAAAACAGTTAGTATATAATACTACATGAAAATCTTATGATAA GTTGAAAACTATTGTATATATCTCTGATTTGGTTGCTAATTTTTTTTGTTAATCCCTTTTTGTTTGATTCAGGATTTTAA TAAATGGGTGATATGTCGTGTTTATGAGTGCAAAGAAGATGGTGATGATGGAACAGAGCTTTCTTGTTTGGATGAAGTTT TCTTGTCACTTGATGATCTTGAAGAAATAAGCTTACCAAATTAGCCTATGCAAGTGATTGATTTAGCTAGATAGCTGCAT TATCTAAATGGGATAATTAATTAAGCTGATTAATTGCTTGTGATCATTATCATCCGTTATTAATTTACTGGCAGTAGTTA ATTAAATCCAGTAGCAAGTGTAGCTGCCATTGTAACAGTGAAATGGCTAGAACTAGATTTTCCACAGCAGCCTCTCAAGT GGGGCACTATGTGAGATTCATGTTCAACCAATATGTAATATGACGTTATGCTTCCAAAGATCCCATTCACTACCATAGTC ACTTCAAATTTTGTTCTCTCTATCTATAGCACTGCTGA
CDS sequence (LotjaGi6g1v0355100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAACCATGTTGATAAATTCTTGGTGCGGATGTACATGGGCAGGTAGAGCTTTGGCAGAGGGAAATCAATGGTACTA CTACAGCAGAAGGACACAAAATAGGGTCACTGAGAATGGATATTGGAAGCCAACAGGAATTGAAGAGCCAGTGATTTCTA GCACAAGCAATAAGAGAGTTGGCATGAAGAAATATTTCATGTTCCATTTGGGAGAAGCCAAAACCAATTGGATAATGCAA GAATATCGTCTATCAGATTCTGCTTCCTCCAGCAGCAGATCATCCAAAAGAAAATCACAACAAAAAACAGATTTTAATAA ATGGGTGATATGTCGTGTTTATGAGTGCAAAGAAGATGGTGATGATGGAACAGAGCTTTCTTGTTTGGATGAAGTTTTCT TGTCACTTGATGATCTTGAAGAAATAAGCTTACCAAATTAG
Protein sequence (LotjaGi6g1v0355100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRTMLINSWCGCTWAGRALAEGNQWYYYSRRTQNRVTENGYWKPTGIEEPVISSTSNKRVGMKKYFMFHLGEAKTNWIMQ EYRLSDSASSSSRSSKRKSQQKTDFNKWVICRVYECKEDGDDGTELSCLDEVFLSLDDLEEISLPN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 4 | 4 | - | – | |
| ProSiteProfiles | 1 | 116 | 116 | 23.449 | ||
| Phobius | 1 | 20 | 20 | - | – | |
| Phobius | 5 | 15 | 11 | - | – | |
| Gene3D | 6 | 121 | 116 | 2.2E-23 | ||
| PANTHER | 15 | 146 | 132 | 2.7E-65 | – | |
| PANTHER | 15 | 146 | 132 | 2.7E-65 | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| SUPERFAMILY | 17 | 114 | 98 | 2.48E-22 | ||
| Pfam | 20 | 84 | 65 | 1.5E-11 | ||
| Phobius | 21 | 146 | 126 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi6g1v0355100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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