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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0356300 |
| Transcript ID | LotjaGi6g1v0356300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar iron transporter-like protein; TAIR: AT3G43660.1 Vacuolar iron transporter (VIT) family protein; Swiss-Prot: sp|Q9M2C0|VITH4_ARATH Vacuolar iron transporter homolog 4; TrEMBL-Plants: tr|A0A0B2RMY6|A0A0B2RMY6_GLYSO Vacuolar iron transporter like 4; Found in the gene: LotjaGi6g1v0356300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66781543..66782898) extracted from Lotus japonicus Gifu genome v1.2.
TTATTATCATGTGGTTAAAATTAAAGAATAATCCGTGGCATGAATCGTGATCCTTTACCATGCCAATTTAGAAAGACGGT TATTAATCACGATCCGTATCCGAAGGAAAAGAAGAGTCTTGAACGTGAAAAGTGAGTATGAACGCATTTGATGCCAAAGT GACACCGAGTCCCACCCGTCCTAGTTGTCACCCACTACCATATTCTCCCCCCACCTGTCTATAAAATGGCGTGTGTCCTC CACACTCCAATATATCCAACCTTAATTCATTTCTTCTTTCCCTACAACTTAATCTCTAGTGCTCTTTCTTCCACTTTACA ATTTTCCTTCATCATCATCCATGGCAGCAGAAACACAACCTTCAAAAGTCTTCAACATAGACGTTGAAGGACAATTAGCA CATGCGGAGGAGGACGGTGGCGATGCTCTGAGCCACTCTGCTCATGACTACACTCAAAGAGCACAGTGGCTCAGAGCGGC CGTCCTGGGCGCCAATGATGGCTTGCTCTCAACTGCTTCCCTCATGATGGGTGTTGGAGCGGTTAAGAAAGATGTTAGGA CCATGATCCTAACGGGGATTGCCGGGTTAGTTGCTGGCGCGTGCAGCATGGCCATTGGAGAGTTTGTTTCTGTTTACTCC CAGTATGATATTGAGCTGGCCCAGATGAAAAGAGAAGGTAATACTCAAAATAAGGACAAGTTGCCGAATCCTTATTACGC CGCCTTGGCTTCTGCTTTAGCTTTTGCCGTAGGTGCCGGCGTGCCGCTGCTCGCTGCAGCGTTTATCACGGAATATAAGG TGAGGATTGGGGTGGTGGTGGCTGCTGTCACCCTTGCCTTGGTGGTTTTTGGAGGGTTGAGTGCTTTTCTTGGGAAGTCA CCGTTGGTGAAATCCTCTTTGAGGGTTTTGTTTGGAGGGTGGCTGGCCATGGCGGTTACTTTTGGATTAACCAAACTTGT GGGTGATCTTGGAATTTGATTCCATTACAACTTCAATTAAATAATCATGCACCCTCTTAGGTCGGTTTTAATTAGATGCA TGATGGGATAGCTTTTAAATTTTTTGTTACATGTTTGCAAAATCATTCAGATATTCGTGCAAGGCACAGGCACACACATA AAAAAGTGACAAACGAGATACAAACCAGATAAATATGGGGTGTTTGTATTGTTTTGTATAAGTATCATTAGTCTTTACGT TATAGAAAGAAATACATGGATGTATATCCAATGTTTGTGCATATTAAACTCATCAGATTCCGTCTTCCAATTAATGTACG CTTATTTTGGACATCGTTTGTTTCAATAAGGCAAAGAAAATGCTTGAACAAGTTATATCAATCTGTTTTTCTTTGG
CDS sequence (LotjaGi6g1v0356300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCAGAAACACAACCTTCAAAAGTCTTCAACATAGACGTTGAAGGACAATTAGCACATGCGGAGGAGGACGGTGG CGATGCTCTGAGCCACTCTGCTCATGACTACACTCAAAGAGCACAGTGGCTCAGAGCGGCCGTCCTGGGCGCCAATGATG GCTTGCTCTCAACTGCTTCCCTCATGATGGGTGTTGGAGCGGTTAAGAAAGATGTTAGGACCATGATCCTAACGGGGATT GCCGGGTTAGTTGCTGGCGCGTGCAGCATGGCCATTGGAGAGTTTGTTTCTGTTTACTCCCAGTATGATATTGAGCTGGC CCAGATGAAAAGAGAAGGTAATACTCAAAATAAGGACAAGTTGCCGAATCCTTATTACGCCGCCTTGGCTTCTGCTTTAG CTTTTGCCGTAGGTGCCGGCGTGCCGCTGCTCGCTGCAGCGTTTATCACGGAATATAAGGTGAGGATTGGGGTGGTGGTG GCTGCTGTCACCCTTGCCTTGGTGGTTTTTGGAGGGTTGAGTGCTTTTCTTGGGAAGTCACCGTTGGTGAAATCCTCTTT GAGGGTTTTGTTTGGAGGGTGGCTGGCCATGGCGGTTACTTTTGGATTAACCAAACTTGTGGGTGATCTTGGAATTTGA
Protein sequence (LotjaGi6g1v0356300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAETQPSKVFNIDVEGQLAHAEEDGGDALSHSAHDYTQRAQWLRAAVLGANDGLLSTASLMMGVGAVKKDVRTMILTGI AGLVAGACSMAIGEFVSVYSQYDIELAQMKREGNTQNKDKLPNPYYAALASALAFAVGAGVPLLAAAFITEYKVRIGVVV AAVTLALVVFGGLSAFLGKSPLVKSSLRVLFGGWLAMAVTFGLTKLVGDLGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 71 | 71 | - | – | |
| PANTHER | 19 | 209 | 191 | 7.1E-102 | ||
| PANTHER | 19 | 209 | 191 | 7.1E-102 | – | |
| Pfam | 44 | 116 | 73 | 1.2E-24 | ||
| Phobius | 72 | 92 | 21 | - | – | |
| TMHMM | 76 | 98 | 23 | - | – | |
| Phobius | 93 | 124 | 32 | - | – | |
| Pfam | 109 | 204 | 96 | 7.6E-18 | ||
| Phobius | 125 | 149 | 25 | - | – | |
| TMHMM | 127 | 149 | 23 | - | – | |
| Phobius | 150 | 155 | 6 | - | – | |
| TMHMM | 156 | 178 | 23 | - | – | |
| Phobius | 156 | 177 | 22 | - | – | |
| Phobius | 178 | 188 | 11 | - | – | |
| TMHMM | 188 | 207 | 20 | - | – | |
| Phobius | 189 | 208 | 20 | - | – | |
| Phobius | 209 | 212 | 4 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Manganese ion transmembrane transporter activity | Enables the transfer of manganese (Mn) ions from one side of a membrane to the other. | ||
| Biological process | Cellular manganese ion homeostasis | Any process involved in the maintenance of an internal steady state of manganese ions at the level of a cell. |
Expression pattern of LotjaGi6g1v0356300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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